Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G62400 613 / 0 HT1 high leaf temperature 1, Protein kinase superfamily protein (.1) AT5G58950 309 / 4e-101 Protein kinase superfamily protein (.1) AT4G31170 290 / 3e-95 Protein kinase superfamily protein (.1.2.3.4) AT2G24360 278 / 2e-90 Protein kinase superfamily protein (.1) AT3G46930 250 / 4e-79 Protein kinase superfamily protein (.1) AT4G38470 249 / 2e-77 STY46 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) AT5G01850 239 / 2e-76 Protein kinase superfamily protein (.1) AT5G50180 236 / 5e-75 Protein kinase superfamily protein (.1) AT2G17700 238 / 1e-73 STY8 serine/threonine/tyrosine kinase 8, ACT-like protein tyrosine kinase family protein (.1) AT4G35780 237 / 4e-73 STY17 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G001900 [exp] 719 / 0 AT1G62400 620 / 0.0 high leaf temperature 1, Protein kinase superfamily protein (.1) Potri.012G080000 [exp] 401 / 1e-139 AT1G62400 405 / 9e-142 high leaf temperature 1, Protein kinase superfamily protein (.1) Potri.015G075200 [exp] 395 / 4e-137 AT1G62400 404 / 2e-141 high leaf temperature 1, Protein kinase superfamily protein (.1) Potri.005G082200 [exp] 340 / 1e-113 AT5G58950 607 / 0.0 Protein kinase superfamily protein (.1) Potri.007G085300 [exp] 335 / 2e-111 AT5G58950 604 / 0.0 Protein kinase superfamily protein (.1) Potri.018G001800 [exp] 296 / 1e-97 AT2G24360 663 / 0.0 Protein kinase superfamily protein (.1) Potri.006G280000 [exp] 296 / 2e-97 AT4G31170 677 / 0.0 Protein kinase superfamily protein (.1.2.3.4) Potri.006G279900 [exp] 292 / 5e-96 AT2G24360 642 / 0.0 Protein kinase superfamily protein (.1) Potri.018G001900 [exp] 291 / 2e-95 AT2G24360 648 / 0.0 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020018 [exp] 677 / 0 AT1G62400 620 / 0.0 high leaf temperature 1, Protein kinase superfamily protein (.1) Lus10015541 [exp] 676 / 0 AT1G62400 623 / 0.0 high leaf temperature 1, Protein kinase superfamily protein (.1) Lus10042122 [exp] 396 / 4e-137 AT1G62400 404 / 7e-141 high leaf temperature 1, Protein kinase superfamily protein (.1) Lus10015436 [exp] 329 / 1e-109 AT5G58950 572 / 0.0 Protein kinase superfamily protein (.1) Lus10011173 [exp] 328 / 2e-109 AT5G58950 567 / 0.0 Protein kinase superfamily protein (.1) Lus10025442 [exp] 322 / 1e-106 AT5G58950 510 / 2e-178 Protein kinase superfamily protein (.1) Lus10000237 [exp] 306 / 7e-104 AT1G62400 313 / 3e-107 high leaf temperature 1, Protein kinase superfamily protein (.1) Lus10002374 [exp] 306 / 1e-103 AT1G62400 312 / 7e-107 high leaf temperature 1, Protein kinase superfamily protein (.1) Lus10020374 [exp] 287 / 5e-94 AT4G31170 697 / 0.0 Protein kinase superfamily protein (.1.2.3.4) Lus10022653 [exp] 254 / 3e-80 AT4G38470 673 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF14531 [poplar] [flax] Kinase-like Kinase-like
Representative CDS sequence Show only first row Show all	>Potri.011G022800.1 pacid=42781260 polypeptide=Potri.011G022800.1.p locus=Potri.011G022800 ID=Potri.011G022800.1.v4.1 annot-version=v4.1 ATGGCGAGTTCATGTTTCCATGCATTTCGTCTTCGAAGACCGAAGAGCAAAACATTAACAATTCCTTCCTCATCAAAATCCCATTTGAATTCTGAAATGG AGAACTTGGAGAGGAAGAGATTTGACAGCATGGAGTCATGGTCAATGATACTGGAATCTGAGAATGTAGAGACTTGGGAGGCTTCAAAGGAGGACGAAGA GGAATGGACTGCTGACCTTTCACAGTTATTTATAGGCAACAAGTTTGCTTCTGGAGCTCATAGTAGGATTTATCGTGGTATTTACAAGCAGAGAGCTGTT GCTGTCAAAATGGTGAGGATTCCAAACCAAATGGACGAGACTAAAACTTTGCTTGAACAGGAATTCAAATGTGAAGTTGCTTTGCTTTCGCGTCTCTTTC ATCCCAATATAGTCCAGTTCATTGCAGCTTGTAAAAAGCCACCTGTGTACTGTATCATCACAGAATACATGTCACAAGGAACTCTGAGGATGTATCTCAA CAAGAAAGAGCCATACTCACTTTCAACAGAAACAATACTGAGATTAGCTCTTGATATATCACGAGGAATGGAGTATCTTCATTCACAGGGAGTCATCCAC AGAGACCTGAAATCAAATAATTTGCTTCTGAATGATGAAATGAGGGTTAAGGTTGCTGATTTCGGCACATCATGTCTAGAAACACAGTGCCAAGAAACCA AAGGGAACAAGGGAACCTACCGCTGGATGGCACCTGAGATGATCAAGGAGAAACATTGCAGTCGGAAAGTTGATGTGTATAGTTTTGGTATTGTGTTATG GGAGCTAACTACAGCTTTGCTTCCCTTTCAAGGAATGACCCCTGTCCAAGCTGCATTTGCTGTAGCCGAGAAGAATGAGCGGCCTCCACTGCCAGCAAGT TGTCAGCCAGCACTTGCACATTTGATAAAGCGCTGTTGGGCAGCCAACCCATCCAAGCGACCAGATTTTAGTCACATTGTTTCTGCTTTGGAGAAGTACG ACGAGTGCGTCAAAGAAGGCCTTCCTCTTGCTTCACACTCAGGGCTCGTCAGCCGGAATGCCATTCTGGAACGCTTGACAGGCTGCGTATCCATGAGCTC ATCTGTACCTGTACATGCCTAA
AA sequence Show only first row Show all	>Potri.011G022800.1 pacid=42781260 polypeptide=Potri.011G022800.1.p locus=Potri.011G022800 ID=Potri.011G022800.1.v4.1 annot-version=v4.1 MASSCFHAFRLRRPKSKTLTIPSSSKSHLNSEMENLERKRFDSMESWSMILESENVETWEASKEDEEEWTADLSQLFIGNKFASGAHSRIYRGIYKQRAV AVKMVRIPNQMDETKTLLEQEFKCEVALLSRLFHPNIVQFIAACKKPPVYCIITEYMSQGTLRMYLNKKEPYSLSTETILRLALDISRGMEYLHSQGVIH RDLKSNNLLLNDEMRVKVADFGTSCLETQCQETKGNKGTYRWMAPEMIKEKHCSRKVDVYSFGIVLWELTTALLPFQGMTPVQAAFAVAEKNERPPLPAS CQPALAHLIKRCWAANPSKRPDFSHIVSALEKYDECVKEGLPLASHSGLVSRNAILERLTGCVSMSSSVPVHA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G62400		HT1	high leaf temperature 1, Prote...		Potri.011G022800 [exp]	0	1
AT4G09760			Protein kinase superfamily pro...		Potri.002G063700 [exp]	4.00	0.8140
AT1G76990		ACR3	ACT domain repeat 3 (.1.2.3.4....		Potri.005G185600 [exp]	4.00	0.8185	Pt-ACR3.2
					Potri.001G051300 [exp]	4.12	0.7905
AT3G16500	AUX_IAA	IAA26, PAP1	indole-3-acetic acid inducible...		Potri.001G190300 [exp]	4.69	0.8338
AT5G36930			Disease resistance protein (TI...		Potri.006G269900 [exp]	5.65	0.7944
AT5G65550			UDP-Glycosyltransferase superf...		Potri.008G024900 [exp]	8.12	0.8073
AT1G30330	ARF	ARF6	auxin response factor 6 (.1.2)		Potri.002G055000 [exp]	8.94	0.8176
AT2G44830			Protein kinase superfamily pro...		Potri.014G047500 [exp]	9.84	0.8493
AT5G57685		LSB1, ATGDU3	LESS SUSCEPTIBLE TO BSCTV 1, A...		Potri.006G267900 [exp]	11.74	0.7835
AT5G07050			nodulin MtN21 /EamA-like trans...		Potri.001G032500 [exp]	17.17	0.7606

Compare expression of checked genes

Potri.011G022800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.