Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G22300 357 / 1e-125 SOBER1 SUPPRESSOR OF AVRBST-ELICITED RESISTANCE 1, carboxylesterases (.1) AT4G22305 316 / 8e-110 alpha/beta-Hydrolases superfamily protein (.1) AT5G20060 85 / 2e-19 alpha/beta-Hydrolases superfamily protein (.1.2.3) AT1G52700 83 / 8e-19 alpha/beta-Hydrolases superfamily protein (.1) AT3G15650 82 / 2e-18 alpha/beta-Hydrolases superfamily protein (.1.2) AT1G18773 58 / 4e-11 unknown protein AT1G52695 44 / 3e-05 alpha/beta-Hydrolases superfamily protein (.1) AT1G47786 42 / 0.0002 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G001701 [exp] 227 / 3e-75 AT4G22300 199 / 9e-65 SUPPRESSOR OF AVRBST-ELICITED RESISTANCE 1, carboxylesterases (.1) Potri.003G060300 [exp] 91 / 1e-21 AT1G52700 382 / 1e-135 alpha/beta-Hydrolases superfamily protein (.1) Potri.018G070700 [exp] 89 / 5e-21 AT5G20060 398 / 8e-142 alpha/beta-Hydrolases superfamily protein (.1.2.3) Potri.018G030200 [exp] 89 / 8e-21 AT5G20060 373 / 4e-132 alpha/beta-Hydrolases superfamily protein (.1.2.3) Potri.006G251100 [exp] 89 / 9e-21 AT5G20060 370 / 7e-131 alpha/beta-Hydrolases superfamily protein (.1.2.3) Potri.001G173700 [exp] 87 / 4e-20 AT3G15650 389 / 7e-138 alpha/beta-Hydrolases superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019438 [exp] 87 / 3e-20 AT5G20060 387 / 1e-137 alpha/beta-Hydrolases superfamily protein (.1.2.3) Lus10014347 [exp] 87 / 4e-20 AT1G52700 328 / 3e-114 alpha/beta-Hydrolases superfamily protein (.1) Lus10043294 [exp] 87 / 6e-20 AT5G20060 385 / 3e-136 alpha/beta-Hydrolases superfamily protein (.1.2.3) Lus10026054 [exp] 86 / 2e-19 AT1G52700 337 / 2e-117 alpha/beta-Hydrolases superfamily protein (.1) Lus10008078 [exp] 84 / 4e-19 AT5G20060 362 / 4e-128 alpha/beta-Hydrolases superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF01738 [poplar] [flax] DLH Dienelactone hydrolase family
Representative CDS sequence Show only first row Show all	>Potri.011G023000.2 pacid=42782295 polypeptide=Potri.011G023000.2.p locus=Potri.011G023000 ID=Potri.011G023000.2.v4.1 annot-version=v4.1 ATGCATCAGGTTCTGCTCACACTCACAGCAAGAAGAAGGCCAATTGCAATCTTTTCATTAACCCTCCTCTTGAGCACCGCCATCTTCATAGCATCAGTTT TCTTGCAGTCGAAAAACCCTTCTTCTTCTCAAAAACAGCAATCCATGGCTGCTGCTCGTAGTTTTGTACTATGGCTTCATGGATTGGGTGACTCAGGCCC TGCCAATGAGCCCATCAAGACCCTCTTCACTTCTCCTGAATTTCGTACCACCAAATGGTCTTTCCCTTCTGCTCCTATTGCTCCTGTCTCCTGCAACTAT GGTGCTAAAATGCCATCATGGTTTGACATCCATGAGATTCCTGTGACAGCTGATTCTCCAAAAGATGAAAGTAGTTTGTTGAAAGCTGTTCAGCATGTGC ATGCAATGATAGACAAGGAAATAGCTGCAGGGACAAATCCTGAGAATGTTTTTGTGTGTGGATTCAGCCAAGGAGGTGCCTTGACCTTGTCCAGTATTCT GCTGTACCCAAAAACTCTAGGAGGTGGAGCAGTCTTCAGTGGATGGGTTCCTTTTAATTCTTCTATCATGGAACAGGTTTCACCAGATGCGAAGAGGACA CCTATTCTGTGGTTACATGGAATGGCTGACGCAACAGTATTGTTTGAAGCTGGACAAGCAGGCCCCCCTTTCCTTGAACAAGCTGGTATAAGCTGCGAGT TTAAGGCTTATCCTGGTCTTGGCCATTCAATAAGCAACGCAGAGTTGAAATACCTGGAATCGTGGATCAAGACTCGCCTGCCAAGTTCTTCGTAG
AA sequence Show only first row Show all	>Potri.011G023000.2 pacid=42782295 polypeptide=Potri.011G023000.2.p locus=Potri.011G023000 ID=Potri.011G023000.2.v4.1 annot-version=v4.1 MHQVLLTLTARRRPIAIFSLTLLLSTAIFIASVFLQSKNPSSSQKQQSMAAARSFVLWLHGLGDSGPANEPIKTLFTSPEFRTTKWSFPSAPIAPVSCNY GAKMPSWFDIHEIPVTADSPKDESSLLKAVQHVHAMIDKEIAAGTNPENVFVCGFSQGGALTLSSILLYPKTLGGGAVFSGWVPFNSSIMEQVSPDAKRT PILWLHGMADATVLFEAGQAGPPFLEQAGISCEFKAYPGLGHSISNAELKYLESWIKTRLPSSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G22300		SOBER1	SUPPRESSOR OF AVRBST-ELICITED ...		Potri.011G023000 [exp]	0	1
AT3G25545			unknown protein		Potri.010G134600 [exp]	4.69	0.7358
AT1G79230		STR1, ATRDH1, A...	ARABIDOPSIS THALIANA RHODANESE...		Potri.007G069300 [exp]	6.32	0.7138
AT5G55610			unknown protein		Potri.001G366000 [exp]	9.16	0.6817
AT1G26740			Ribosomal L32p protein family ...		Potri.010G165100 [exp]	15.87	0.6595
AT2G35790			unknown protein		Potri.010G219400 [exp]	18.33	0.7216
AT5G16870			Peptidyl-tRNA hydrolase II (PT...		Potri.019G050100 [exp]	20.49	0.6703
AT3G05170			Phosphoglycerate mutase family...		Potri.005G037900 [exp]	25.09	0.6253
AT1G08220			unknown protein		Potri.009G002000 [exp]	27.62	0.6779
AT4G24820			26S proteasome, regulatory sub...		Potri.012G093500 [exp]	28.93	0.6771
AT1G65650		UCH2	Peptidase C12, ubiquitin carbo...		Potri.017G075200 [exp]	33.04	0.6455

Compare expression of checked genes

Potri.011G023000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.