Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G22310 205 / 3e-70 Uncharacterised protein family (UPF0041) (.1) AT4G14695 196 / 1e-66 Uncharacterised protein family (UPF0041) (.1), Uncharacterised protein family (UPF0041) (.2) AT4G05590 192 / 3e-65 unknown protein AT5G20090 77 / 6e-20 Uncharacterised protein family (UPF0041) (.1), Uncharacterised protein family (UPF0041) (.2), Uncharacterised protein family (UPF0041) (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G333902 [exp] 77 / 2e-19 AT5G20090 144 / 5e-46 Uncharacterised protein family (UPF0041) (.1), Uncharacterised protein family (UPF0041) (.2), Uncharacterised protein family (UPF0041) (.3) Potri.012G095133 [exp] 70 / 8e-17 AT5G20090 199 / 5e-68 Uncharacterised protein family (UPF0041) (.1), Uncharacterised protein family (UPF0041) (.2), Uncharacterised protein family (UPF0041) (.3) Potri.015G092500 [exp] 67 / 1e-15 AT5G20090 189 / 7e-64 Uncharacterised protein family (UPF0041) (.1), Uncharacterised protein family (UPF0041) (.2), Uncharacterised protein family (UPF0041) (.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023745 [exp] 211 / 2e-72 AT4G22310 206 / 1e-70 Uncharacterised protein family (UPF0041) (.1) Lus10011790 [exp] 207 / 4e-71 AT4G22310 202 / 3e-69 Uncharacterised protein family (UPF0041) (.1) Lus10032564 [exp] 162 / 2e-53 AT4G22310 163 / 5e-54 Uncharacterised protein family (UPF0041) (.1) Lus10025851 [exp] 75 / 9e-19 AT5G20090 190 / 2e-64 Uncharacterised protein family (UPF0041) (.1), Uncharacterised protein family (UPF0041) (.2), Uncharacterised protein family (UPF0041) (.3) Lus10038250 [exp] 75 / 9e-19 AT5G20090 190 / 2e-64 Uncharacterised protein family (UPF0041) (.1), Uncharacterised protein family (UPF0041) (.2), Uncharacterised protein family (UPF0041) (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0141 [poplar] [flax] MtN3-like PF03650 [poplar] [flax] MPC Mitochondrial pyruvate carriers
Representative CDS sequence Show only first row Show all	>Potri.011G023100.2 pacid=42781410 polypeptide=Potri.011G023100.2.p locus=Potri.011G023100 ID=Potri.011G023100.2.v4.1 annot-version=v4.1 ATGGCGACATCGAAGCTACAAGCTCTGTGGAATCACCCAGCCGGTCCCAAAACCATTCATTTTTGGGCACCTACTTTTAAATGGGGTATTAGCATTGCCA ATATTGCTGACTTCGCTAAACCTCCGGAAAAACTGTCCTACCCTCAGCAAATAGCGGTCACTTGTACTGGAGTTATATGGTCACGCTACAGTACTGTAAT TACACCAAAAAATTGGAATCTATTTAGTGTAAATGTTGCGATGGCTGCAACAGGCATCTACCAACTCAGTCGCAAAATACAGCACGATTACTTTTCTGAG GAAGAAGCTGCTGTTGCAAAGGAATAA
AA sequence Show only first row Show all	>Potri.011G023100.2 pacid=42781410 polypeptide=Potri.011G023100.2.p locus=Potri.011G023100 ID=Potri.011G023100.2.v4.1 annot-version=v4.1 MATSKLQALWNHPAGPKTIHFWAPTFKWGISIANIADFAKPPEKLSYPQQIAVTCTGVIWSRYSTVITPKNWNLFSVNVAMAATGIYQLSRKIQHDYFSE EEAAVAKE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G22310			Uncharacterised protein family...		Potri.011G023100 [exp]	0	1
AT1G04290			Thioesterase superfamily prote...		Potri.004G134066 [exp]	1.73	0.8594
AT1G80500			SNARE-like superfamily protein...		Potri.003G183400 [exp]	2.82	0.8623
AT4G36800		RCE1	RUB1 conjugating enzyme 1 (.1....		Potri.005G126500 [exp]	3.46	0.8230
AT4G30010			unknown protein		Potri.006G075600 [exp]	3.60	0.8717
AT4G28088			Low temperature and salt respo...		Potri.018G105100 [exp]	3.87	0.8592
AT1G09920			TRAF-type zinc finger-related ...		Potri.002G109800 [exp]	4.47	0.7976
AT5G61310			Cytochrome c oxidase subunit V...		Potri.014G120500 [exp]	5.47	0.8290
AT1G52740		HTA9	histone H2A protein 9 (.1)		Potri.006G249400 [exp]	5.65	0.8593	HTA906
AT4G08230			glycine-rich protein (.1.2)		Potri.005G174700 [exp]	6.48	0.8513
AT5G42190		SKP1B, ASK2	Arabidopsis SKP-like 2, E3 ubi...		Potri.002G018700 [exp]	7.48	0.8215	Pt-SKP1.2

Compare expression of checked genes

Potri.011G023100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.