Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G17640 350 / 3e-118 Leucine-rich repeat (LRR) family protein (.1) AT4G03010 241 / 1e-75 RNI-like superfamily protein (.1) AT1G03440 235 / 2e-73 Leucine-rich repeat (LRR) family protein (.1) AT3G59510 109 / 2e-26 Leucine-rich repeat (LRR) family protein (.1) AT5G66330 91 / 9e-20 Leucine-rich repeat (LRR) family protein (.1) AT2G15320 89 / 3e-19 Leucine-rich repeat (LRR) family protein (.1) AT3G12610 86 / 3e-18 DRT100 DNA-DAMAGE REPAIR/TOLERATION 100, Leucine-rich repeat (LRR) family protein (.1) AT2G26330 86 / 1e-17 QRP1, ER QUANTITATIVE RESISTANCE TO PLECTOSPHAERELLA 1, ERECTA, Leucine-rich receptor-like protein kinase family protein (.1) AT5G07180 84 / 6e-17 ERL2 ERECTA-like 2 (.1) AT5G62230 82 / 2e-16 ERL1 ERECTA-like 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G001000 [exp] 588 / 0 AT3G17640 386 / 1e-132 Leucine-rich repeat (LRR) family protein (.1) Potri.014G136100 [exp] 233 / 2e-72 AT1G03440 541 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.017G028600 [exp] 107 / 1e-25 AT3G59510 372 / 8e-127 Leucine-rich repeat (LRR) family protein (.1) Potri.017G028400 [exp] 100 / 4e-23 AT3G59510 366 / 6e-124 Leucine-rich repeat (LRR) family protein (.1) Potri.015G132200 [exp] 94 / 3e-20 AT5G62230 1404 / 0.0 ERECTA-like 1 (.1.2) Potri.006G220100 [exp] 90 / 6e-19 AT2G26330 1547 / 0.0 QUANTITATIVE RESISTANCE TO PLECTOSPHAERELLA 1, ERECTA, Leucine-rich receptor-like protein kinase family protein (.1) Potri.012G130400 [exp] 87 / 5e-18 AT5G62230 1412 / 0.0 ERECTA-like 1 (.1.2) Potri.001G301400 [exp] 85 / 9e-18 AT2G15320 429 / 6e-150 Leucine-rich repeat (LRR) family protein (.1) Potri.009G097100 [exp] 82 / 4e-17 AT2G15320 473 / 2e-167 Leucine-rich repeat (LRR) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029622 [exp] 247 / 3e-78 AT1G03440 534 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Lus10008190 [exp] 247 / 4e-78 AT1G03440 576 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Lus10031601 [exp] 215 / 5e-66 AT1G03440 463 / 2e-163 Leucine-rich repeat (LRR) family protein (.1) Lus10033744 [exp] 114 / 5e-29 AT4G03010 244 / 3e-84 RNI-like superfamily protein (.1) Lus10019356 [exp] 108 / 6e-26 AT3G59510 377 / 1e-128 Leucine-rich repeat (LRR) family protein (.1) Lus10007417 [exp] 108 / 8e-26 AT3G59510 379 / 2e-129 Leucine-rich repeat (LRR) family protein (.1) Lus10025578 [exp] 105 / 7e-25 AT3G59510 388 / 6e-133 Leucine-rich repeat (LRR) family protein (.1) Lus10042681 [exp] 102 / 3e-24 AT4G03010 205 / 1e-63 RNI-like superfamily protein (.1) Lus10031689 [exp] 89 / 1e-18 AT5G62230 1437 / 0.0 ERECTA-like 1 (.1.2) Lus10027968 [exp] 81 / 1e-18 AT1G03440 160 / 2e-49 Leucine-rich repeat (LRR) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.011G023500.1 pacid=42781352 polypeptide=Potri.011G023500.1.p locus=Potri.011G023500 ID=Potri.011G023500.1.v4.1 annot-version=v4.1 ATGGCCAACTCACACGCTCTCTTCCTGCTTCTGCTACTGCTTCTTGTCGATGCTTGTCGTCCCTCACATCAACAAGACCAAAACAAGATAAGCAGCAATG ATCTTGCAGCTCTAGCAGCCGTAAAAGACAGCCTGACGGACATTCCAGGCTCAAACTTCTTCTCCACCTGGGACTTCACTTCGCCAGATCCCTGCTCAGC CTTCTCTGGCATTACTTGCTCTCTCAACCGAGTCACCATTCTCACACTCGGCACTGGTGTCTCTAGCTCACGTGGACTGGCTGGTTTCCTCTCCCCTTCA GTCTCCAACCTCACCGAATTAACCCAGCTCGTCCTCTACCCCGGCCTCGTCACTGGCCCTATCCCTCCTCAACTGGGTCTGCTCAGCAACCTCCGAGTTC TCTCCTTAACCAACAATCGCTTAAAAGGCCCCATACCCAGTTCACTATCCTCGCTCCCCAACTTACACACTCTTGATCTGAGTTACAACCAGCTCACCGG GACAGTCCCGCCGGGTCTCTTCACTGGGTTGTCCCAGTTGAAAGTCATGATTCTGGCTTCAAACCAATTATCCGGCGAGTTGCCAAGAATCGTGTCAGCA GAGATCCTGCATTTAGATTTGAAAGACAACAGTTTAACAGGGACATTGCCGTTAAGGCTGCCGTCAACGATCCGTTACTTGTCAGCATCGAAGAACATGA TGTGGGGCCCACTCGACGGGCTACAATCGTTGTCGGAGTTAGGGTTTCTCGACTTAAGCATGAACCAATTCAGTGGGCCCATACCTTCCTCTCTCTTGAG GCCCCCCCTCTCTTCATTGTTTTTGCAACGGAACAATTTATCAGGTGGGGTCCCATCATCATTACCATCATCATCTTTAATGTACGGCGAGGGATCAATC GTGGACTTGAGCCACAATCTCCTGACAGGTGAATTATCACCCGTTCTGGCCGCGGTGGAGACGCTGTTCTTGAATAACAACCGTCTGACGGGGAGGGTCC CGGAGGAGTACGTGAAGAATGTGTACGGAGGCAGCACAAAGACATTGTACTTGCAACATAATTATATAACAGGGTTTCCATTGGAAGCAGGGTTGGGATT GCCAGATACAGTGTCGTTATGCTTGACGTATAATTGCATGGTTCCATCAGTAGGGTTCAAGGGATGCCCCGCCGCCAGTGATGGCGAGCAGCTATCAAGG CCAGAGTCGCAATGTGTGGTGTTCAACCATGGAAGATCTATACCTTAA
AA sequence Show only first row Show all	>Potri.011G023500.1 pacid=42781352 polypeptide=Potri.011G023500.1.p locus=Potri.011G023500 ID=Potri.011G023500.1.v4.1 annot-version=v4.1 MANSHALFLLLLLLLVDACRPSHQQDQNKISSNDLAALAAVKDSLTDIPGSNFFSTWDFTSPDPCSAFSGITCSLNRVTILTLGTGVSSSRGLAGFLSPS VSNLTELTQLVLYPGLVTGPIPPQLGLLSNLRVLSLTNNRLKGPIPSSLSSLPNLHTLDLSYNQLTGTVPPGLFTGLSQLKVMILASNQLSGELPRIVSA EILHLDLKDNSLTGTLPLRLPSTIRYLSASKNMMWGPLDGLQSLSELGFLDLSMNQFSGPIPSSLLRPPLSSLFLQRNNLSGGVPSSLPSSSLMYGEGSI VDLSHNLLTGELSPVLAAVETLFLNNNRLTGRVPEEYVKNVYGGSTKTLYLQHNYITGFPLEAGLGLPDTVSLCLTYNCMVPSVGFKGCPAASDGEQLSR PESQCVVFNHGRSIP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G17640			Leucine-rich repeat (LRR) fami...		Potri.011G023500 [exp]	0	1
					Potri.001G367600 [exp]	2.44	0.9146
AT3G15550			unknown protein		Potri.001G175500 [exp]	9.48	0.9181
AT3G02120			hydroxyproline-rich glycoprote...		Potri.004G120200 [exp]	11.40	0.9170
AT5G66230			Chalcone-flavanone isomerase f...		Potri.007G057800 [exp]	22.18	0.9129
AT4G14330			P-loop containing nucleoside t...		Potri.010G069400 [exp]	22.91	0.9126
AT5G10160			Thioesterase superfamily prote...		Potri.001G209900 [exp]	24.81	0.8515
AT5G60390			GTP binding Elongation factor ...		Potri.008G042700 [exp]	25.88	0.9077	Pt-ADR12.2
AT4G14330			P-loop containing nucleoside t...		Potri.008G169000 [exp]	27.62	0.9091
AT1G67680			SRP72 RNA-binding domain (.1)		Potri.006G216400 [exp]	28.46	0.9013
AT2G20590			Reticulon family protein (.1.2...		Potri.007G137700 [exp]	29.59	0.9095

Compare expression of checked genes

Potri.011G023500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.