Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03475 593 / 0 LIN2, HEMF1, ATCPO-I LESION INITIATION 2, Coproporphyrinogen III oxidase (.1) AT4G03205 283 / 8e-95 HEMF2 Coproporphyrinogen III oxidase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021087 [exp] 584 / 0 AT1G03475 599 / 0.0 LESION INITIATION 2, Coproporphyrinogen III oxidase (.1) Lus10017221 [exp] 505 / 3e-173 AT1G03475 557 / 0.0 LESION INITIATION 2, Coproporphyrinogen III oxidase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01218 [poplar] [flax] Coprogen_oxidas Coproporphyrinogen III oxidase
Representative CDS sequence Show only first row Show all	>Potri.011G023900.2 pacid=42780331 polypeptide=Potri.011G023900.2.p locus=Potri.011G023900 ID=Potri.011G023900.2.v4.1 annot-version=v4.1 ATGCCTCCTACAGCTACTCTCTCCGCTTCTTCTTCTCTCAATCATCTCTTTCCAATCCCTCCCTCCTCCTCCTCATCTTTCACTTCAACTCCTTCGCCTA CTAGCTGTTATTTCCATCCCTATACCAAGAAATTCTCATCATTACGCTTCAAACCCAACAAACCCAACATGACTCGATCTGCAGTCTCCATCGAGAAAGA AACCCCGGAGACAGAGCGGCCCATTACATTTCTTCGTGAATCAGAAGGGGCTGACGTGAGGGCCCGCTTCGAGAAGATGATCAGGGACGCCCAGGACAGC GTTTGTGCTGCCATCGAGGCTGTTGATAAAGGAGGCAAGTTCAAGGAGGATGTCTGGTCGAGACCGGGAGGTGGAGGAGGTATCAGCAGGGTCTTGCAGG ACGGTGCCGTTTGGGAGAAAGCCGGGGTTAATGTCTCTGTTGTTTATGGAGTCATGCCTCCTGAAGCTTATCGGGCTGCTAAGGCTGCTCCTGCTGATCA AAAGCCTGGCCCTGTTCCTTTTTTCGCTGCTGGCATCAGCTCTGTTTTGCACCCCAAGAACCCATTTGCGCCTACTTTGCATTTCAATTATCGATACTTC GAGACGGATGCTCCTCAAGATGTTCCTGGGGCACCTAGGCAGTGGTGGTTTGGGGGCGGGACTGATTTGACTCCTGCTTATATCTTTGATGAGGATGTTA AGCATTTCCATTCGACTCAAAAAAAGGCCTGTGACAAATTTGATCCTACCTTTTATCCACGGTTCAAAAAATGGTGTGATGACTATTTCTATATCAAGCA CCGAGGTGAGAGACGAGGGCTTGGAGGAATCTTTTTTGATGATCTAAATGACTATGATCAGGAGATGCTTCTATCCTTCGCCACTGAGTGTGCAAATTCT GTGGTACCTGCATACATTCCCATTATAGAGAAAAGGAAGGACACACCATTCACAGATCATCACAAAGCATGGCAACAATTGCGAAGAGGACGCTACGTAG AATTCAACTTGGTTTATGATCGGGGTACGACATTTGGATTGAAGACAGGAGGTCGTATTGAAAGTATTCTTGTTTCTCTGCCACTATCTGCACGATGGGA ATATGATCATAAACCTGAAGAGGGAAGTGAGGAGTGGAAGTTATTAGATGCTTGCATCAACCCAAAAGAATGGATCTAA
AA sequence Show only first row Show all	>Potri.011G023900.2 pacid=42780331 polypeptide=Potri.011G023900.2.p locus=Potri.011G023900 ID=Potri.011G023900.2.v4.1 annot-version=v4.1 MPPTATLSASSSLNHLFPIPPSSSSSFTSTPSPTSCYFHPYTKKFSSLRFKPNKPNMTRSAVSIEKETPETERPITFLRESEGADVRARFEKMIRDAQDS VCAAIEAVDKGGKFKEDVWSRPGGGGGISRVLQDGAVWEKAGVNVSVVYGVMPPEAYRAAKAAPADQKPGPVPFFAAGISSVLHPKNPFAPTLHFNYRYF ETDAPQDVPGAPRQWWFGGGTDLTPAYIFDEDVKHFHSTQKKACDKFDPTFYPRFKKWCDDYFYIKHRGERRGLGGIFFDDLNDYDQEMLLSFATECANS VVPAYIPIIEKRKDTPFTDHHKAWQQLRRGRYVEFNLVYDRGTTFGLKTGGRIESILVSLPLSARWEYDHKPEEGSEEWKLLDACINPKEWI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G03475		LIN2, HEMF1, AT...	LESION INITIATION 2, Coproporp...		Potri.011G023900 [exp]	0	1
AT1G14900		HMGA	high mobility group A (.1)		Potri.004G087500 [exp]	9.16	0.8781	HMGA902
AT4G16430	bHLH	bHLH003, INU3	basic helix-loop-helix (bHLH) ...		Potri.005G221100 [exp]	13.41	0.8529
AT5G47840		AMK2	adenosine monophosphate kinase...		Potri.013G103400 [exp]	14.14	0.8892
AT2G21340			MATE efflux family protein (.1...		Potri.009G122600 [exp]	14.28	0.8954
AT5G18260			RING/U-box superfamily protein...		Potri.013G060900 [exp]	21.44	0.8629
AT4G03500			Ankyrin repeat family protein ...		Potri.019G105900 [exp]	21.90	0.8280
AT5G64410		ATOPT4	ARABIDOPSIS THALIANA OLIGOPEPT...		Potri.005G150400 [exp]	24.65	0.8680
AT4G03500			Ankyrin repeat family protein ...		Potri.019G107800 [exp]	30.33	0.8244
AT2G02070	C2H2ZnF	ATIDD5	indeterminate(ID)-domain 5 (.1...		Potri.008G142400 [exp]	36.41	0.8539
AT1G27510			Protein of unknown function (D...		Potri.012G079700 [exp]	42.84	0.8460

Compare expression of checked genes

Potri.011G023900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.