Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-SPIKE1.3
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16340 2971 / 0 SPK1 SPIKE1, guanyl-nucleotide exchange factors;GTPase binding;GTP binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G000750 [exp] 162 / 3e-46 AT4G16340 155 / 9e-45 SPIKE1, guanyl-nucleotide exchange factors;GTPase binding;GTP binding (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030776 [exp] 2782 / 0 AT4G16340 2660 / 0.0 SPIKE1, guanyl-nucleotide exchange factors;GTPase binding;GTP binding (.1) Lus10013253 [exp] 2521 / 0 AT4G16340 2415 / 0.0 SPIKE1, guanyl-nucleotide exchange factors;GTPase binding;GTP binding (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF06920 [poplar] [flax] DHR-2 Dock homology region 2 CL0154 [poplar] [flax] C2 PF14429 [poplar] [flax] DOCK-C2 C2 domain in Dock180 and Zizimin proteins
Representative CDS sequence Show only first row Show all	>Potri.011G024000.1 pacid=42780392 polypeptide=Potri.011G024000.1.p locus=Potri.011G024000 ID=Potri.011G024000.1.v4.1 annot-version=v4.1 ATGGATAATAGTAATAGTAACGGCAGCAGCGGGGGGCAGCGGTTCCGGAAAATACCTCGGCATTCTCAGTCCCTTTCTCATCTCAAGTTGGACCCGCTGG TAGATGAAAATTTGGAGCAGTGGCCACATCTTAATGAACTTGTTCAATGTTATAGAACTGATTGGGTGAAGGATGAAAACAAGTATGGTCATTATGAAAG TATCTCTCCAGTATCTTTTCAAAACCAGATTTTTGAAGGTCCGGATACTGATCTCGAGACAGAAATGCATCTTGCCAATTCAAGACGAAACAAGGCTGAA GAGACCACCGATGATGACATCCCAAGTACTTCAGGAAGGCAATTTGTGGAGGCCGCCTTCCCCGACTCATCAAATTCTGTTGTTTCAAAGCATTTTGGTG AATCTCCTCTCCCTGCATATGAACCAGCTTTTGATTGGGATAATGAGAGGTCGATGATATTTGGCCAAAGGATTCCTGAAACTCCATTGCCACAGTATGA CAGTGGATTGAAGATCTCTGTGAAAGTACTGTCCCTATCATTTCAAGCAGGATTAGCTGAGCCATTTTATGGTACAATTTGCATATATAATAAGGAGAGA AGAGAAAAGTTGTCCGAGGATTTTTATTTTTCTGTGGTGCCAACAGACACACAAGATGCAAAAATTTCTCATGATCCTCGTGGAATTTTCTATTTAGATG CTCCTTCATCATCAATATGTTTGCTAATCCAACTAGAGAAGCCTGCCACAGAAGAAGGCGGGGTCACTGCCTCTGTTTATTCACGTAAAGAACCTGTGCA CTTGAGCGAGAGAGAGAAGCAGAAACTGCAGGTCTGGTCTCGTATTATGCCTTACAAAGAATCCTTTGCCTGGACTATTGTTCCATTATTTGATAACAGT ATTGCTGCGACTTCCGGGGGGGCTGCTTCTCCAAGCAGCCCTCTTGCTCCAAGTGTATCTGGCTCAAGCTCCCATGACGGTGTTTTCGAGCCTGTTGCAA AGATCACTCTGGATGGGAAGTTGGGTTATTCAAGTGGAAGCTCTGTTGTGGTTGAAATATCAAATTTAAATAAAGTTAAGGAAAGCTACACTGAGGACTC ACTTCAGGATCCTAAACGCAAAGTTCATAAACCTGTCAAGGGTGTTCTCCGACTAGAAATTGAAAAGCATCAGACAGCCCATGCTGAGTTGGAAAATTTA TCAGAAACTGGCAGTATAACCAATGATTCCATTGATCTGGGGGATCGTGTTGCTGATTCTGCATTTACAAAATCCCCTAGCAATGGCTTTGATGATCCTC AAACTAGTGGTTCGAAGTGGAATATCTTTGATGGGAAAGAAACATCTGGAAATATATCAAATGCTCGTGAAAATCCTGATTTCACTGCTGATGATTTTCA AGCTTTTGATTTCCGCACGACCACGAGGAACGAGCCTTTCTTGCAGCTTTTCCATTGCCTGTATGTTTACCCATTAACTGTCAGTTTGAGTCGGAAGAGG AATTTGTTCATTCGGGTTGAACTAAGGAAGGATGACGTGGATGTTCGTAGACAGCCTTTAGAGGCAATGCATCCCAGGGAGCCAGGAACATCGCTCCAAA AGTGGGCTCACACACAAGTAGCTGCTGGGACTAGAGTGGCTTGCTATCATGATGAAATCAAACTTTCTCTGCCAGCGATTTGGACACCATCCCATCACCT CTTGTTCACTTTCTTCCATGTTGATCTTCAAACCAAACTGGAAGCTCCAAAACCAGTGGTTATCGGATATGCAGTGCTTCCATTATCCACACATGCACAG TTGAGATCTGAAATTTCTTTGCCAATAATGAGAGAGCTGGTTCCACATTATCTCCAGGAAATGGGAAAGGAGAGGCTGGATTATTTGGAAGATGGAAAAA ATGTCTTCAGATTGCGCTTGAGACTATGCTCATCTCTGTATCCCATTAATGAGCGCATTAGAGATTTTTTTATTGAATATGATAGGCACACTCTTCGTAC TAGTCCACCTTGGGGATCTGAACTTCTTGAGGCCATTAATAGTCTGAAGAACGTTGATTCCACTGCTTTGCTTCAGTTTCTCCACCCAATTTTGAATATG CTTCTCCATCTTATTGGCAGTGGTGGAGAAACTCTCCAGGTTGCAGCCTTCAGGGCCATGGTTAATATCCTAACTAGGGTGCAGCAAGAGTCAGTTGATG ATACTGAACGGAATCGTTTTCTGGTTAACTATGTTGATTATGCTTTTGATGACTTTGGTGGTCGTCAACCACCTGTTTATCCTGGTTTGTCCACTGTGTG GGGGAGTCTGGCTCGTAGCAAGGCTAAAGGCTATCGTGTTGGACCAGTATATGATGATGTATTGGCAATGGCATGGTTTTTCCTTGAGCTTATTGTCAAG TCAATGGCATTGGAGCAAGCTCGTCTTTTCTATCATAGTCTTCCATTGGGTGAAGATGTTCCACCGATGCAATTGAAAGAAGGTGTGTTCAGATGCATCA TGCAGTTATATGATTGCCTTCTTACAGAGGTGCATGAGCGTTGTAAGAAGGGTTTAAGCTTGGCAAAACGTTTGAATAGCAGTTTGGCCTTCTTCTGCTA TGATCTTTTGTCAATCATTGAACCTCGTCAAGTTTTTGAATTGGTGTCCTTGTACCTGGACAAGTTTTCTGGGGTATGCCAATCAGTTCTTCATGACTGC AAGCTTACCTTTTTGCAAATCATATGTGATCATGATCTTTTTGTGGAGATGCCGGGGAGGGACCCTTCAGATAGAAACTACCTTGCATCTGTTTTAATAC AAGAGCTTTTCCTTACTTGGGATCATGACGAGCTATCTCAACGGTCAAAGGCAGCCAGAATCTTAGTAGTACTGCTTTGCAAGCATGAATTTGATGCTCG ATACCAAAAGCCTGAAGATAAACTATATATCGCACAGCTATATTTTCCACTTGTTGGCCAGATCCTGGATGAGATGCCTGTCTTCTACAACCTGAATGCT GTTGAAAAGCGTGAAGTTTTAATTGTTATTTTGCAAATCATGCGCAATTTGGATGATACATCGCTTGTCAAGGCGTGGCAGCAAAGCATTGCTCGGACTA GATTATTTTTCAAACTCATGGAGGAATGCCTTGTTCTTTTTGAGCACAGAAAACCTGCTGATGGCATTCTTATGGGATCTAGTTCTCGCAGTCCTGTTGG GGATGGACCTGCTTCTCCCAAGTACTCCGATAGGCTCTCTCCAGCAATCAACAATTATCTGTCTGAGGCATCACGGCAAGAAGTCAGGCCTCAGGGTAAA ACTGATAATGGATATTTGTGGCAGAGAGTGAATTCCCAATTAAGCTCCCCCAGCCAGCCATATTCCTTGAGAGAAGCACTTGCTCAGGCACAATCTTCCA GGATTGGAGCTTCAGCCCAAGCACTTAGAGAATCCTTGCATCCAATATTGAGACAAAAACTGGAGCTTTGGGAAGAAAACTTGAGTGCTGCTGTGAGTCT TCAGGTTCTGGAAATAACTGAGAAGTTTTCTATGATGGCAGCTTCCCATAGCATTGCTACTGATTATGGGAAACTTGATTGCCTCACAGCCATATTTACG AGCTTCTTCTCTCGAAATCAACCATTGTCTTTCTGGAAAGCTCTATTTCCTGTCTTTAACAATGTGTTTGATCTTCATGGGGCAACATTAATGGCCAGGG AGAACGATCGTTTCTTAAAGCAGGTTGCTTTCCATCTTCTTCGGCTTGCAGTTTTTAGAAACGAAAGTGTCAAGAAAAGAGCTGTTATTGGCCTCCAGAT TCTTGTCAGGAGCGCTTTCTATTACTTCATGCAAACAGCAAGGTTGAGGGTCATGCTGACTATCACACTGTCAGAGCTGATGTCTGATGTGCAAGTGACT CAGATGAAGTCTGATGGAATGCTAGAGGAGAGTGGTGAAGCAAAGCGTCTTCGCAAGTCTTTGGAGGAGGTGGCAGATGAATTGAAGACTCCTGACCTAC TACGGGAATGTGGAGTTCCTGAAAGTGCTCTGGTGGCAGTTCCAAAAAAGTTGGCAGACAATAGGTGGTCCTGGAGTGAGGTGAAATATCTCTCAGACTG CCTTATCCTGGCCCTTGATGCTAGCCTTGAACATGCACTCTTGGGTTCTGTAATGACTGTGGATAGATATGCGGCTGCAGAGAGCTTCTATAAACTAGCA ATGGCATTTGCTCCTGTTCCTGATCTTCACATAATGTGGTTACTGCATTTATGCGATGCGCATCAGGAAATGCAGTCTTGGGCTGAAGCTGCACAGTGTG CTGTGGCTGTTGCTGGTGTTGTAATGCAGGCTCTTGTGGCTAGGAATGATGGTGTGTGGAGCAAAGATCACGTGATCTCTCTACGTAAAATTTGCCCAAT GGTCAGCAGTGAGATCACTGCTGAGGCATCTGCAGCTGAGGTAGAGGGGTATGGTTCTTCAAAGCTCACAGTGGACTCTGCTGTAAAATATCTACAGCTT GCTAATAGGCTTTTCTCTCAAGCTGAGCTTTTTCATTTCTGTGCAAACATTCTGGAGCTTGTAATACCAGTTCATAAAAGTAGGAGGGCATATGGGCAGC TGGCTAAATGTCACACCATGCTTACTGATATCTATGAATCAATTCTGGAGCAGGAATCAAGCCCAATTCCGTTCACTGATGCCACATACTATAGGGTGGG ATTCTATGGTGAAAGGTTTGGGAAACTAGATAGGAAGGAATATGTATACCGAGAGCCCCGTGATGTACGGCTAGGTGACATAATGGAGAAACTTAGTCAT ATTTATGAGTCTAGGATGGACGACAATCACACTTTGCATATTATTCCAGATTCTAGGCAAGTAAAGGCTGACGAGCTGCAGCCCGGAGTCTGCTACCTGC AGATAACTGCTGTTGATCCGGTCATGGAAGATGAAGATTTAGGAAGCAGAAGGGAAAGGATCTTTTCTCTTTCCACTGGAACTGTCCGGGCACGTGTCTT TGACCGCTTCTTGTTTGACACTCCATTTACAAAAAATGGTAAAACCCAAGGTGGATTGGAAGACCAATGGAAGAGGAGGACAGTTCTTCAGACTGAAGGC TCATTCCCTGCTCTGGTGAACAGGCTTTTGGTAATGAAATCTGAATCTCTTGAGTTCTCACCAGTCGAGAATGCAATTGGAATGATTGAAACTCGAACAG CTGCCTTACGAAACGAGCTTGAGGAGCCCCGCAGCTCTGAAGGCGATCAGCTTCCACGTCTCCAAAGTTTGCAGAGAATTCTCCAAGGCAGTGTTGCCGT TCAAGTAAACAGCGGCGTTTTGAGTGTCTGCACGGCCTTCCTGTCGGGTGAGCCTGCTACAAGGTTGCGTTCTCAAGAACTGCAGCAACTCATTGCTGCC TTGCTTGAATTCATGGCTGTTTGCAAGCGCGCCATTCGTGTACATTTTAGATTGATTGGAGAGGAAGATCAAGATTTCCACACGCAGCTTGTGAACGGAT TTCAATCGCTCACTGCAGAGTTATCTCATTACATCCCAGCCATTCTTGCAGAACTATGA
AA sequence Show only first row Show all	>Potri.011G024000.1 pacid=42780392 polypeptide=Potri.011G024000.1.p locus=Potri.011G024000 ID=Potri.011G024000.1.v4.1 annot-version=v4.1 MDNSNSNGSSGGQRFRKIPRHSQSLSHLKLDPLVDENLEQWPHLNELVQCYRTDWVKDENKYGHYESISPVSFQNQIFEGPDTDLETEMHLANSRRNKAE ETTDDDIPSTSGRQFVEAAFPDSSNSVVSKHFGESPLPAYEPAFDWDNERSMIFGQRIPETPLPQYDSGLKISVKVLSLSFQAGLAEPFYGTICIYNKER REKLSEDFYFSVVPTDTQDAKISHDPRGIFYLDAPSSSICLLIQLEKPATEEGGVTASVYSRKEPVHLSEREKQKLQVWSRIMPYKESFAWTIVPLFDNS IAATSGGAASPSSPLAPSVSGSSSHDGVFEPVAKITLDGKLGYSSGSSVVVEISNLNKVKESYTEDSLQDPKRKVHKPVKGVLRLEIEKHQTAHAELENL SETGSITNDSIDLGDRVADSAFTKSPSNGFDDPQTSGSKWNIFDGKETSGNISNARENPDFTADDFQAFDFRTTTRNEPFLQLFHCLYVYPLTVSLSRKR NLFIRVELRKDDVDVRRQPLEAMHPREPGTSLQKWAHTQVAAGTRVACYHDEIKLSLPAIWTPSHHLLFTFFHVDLQTKLEAPKPVVIGYAVLPLSTHAQ LRSEISLPIMRELVPHYLQEMGKERLDYLEDGKNVFRLRLRLCSSLYPINERIRDFFIEYDRHTLRTSPPWGSELLEAINSLKNVDSTALLQFLHPILNM LLHLIGSGGETLQVAAFRAMVNILTRVQQESVDDTERNRFLVNYVDYAFDDFGGRQPPVYPGLSTVWGSLARSKAKGYRVGPVYDDVLAMAWFFLELIVK SMALEQARLFYHSLPLGEDVPPMQLKEGVFRCIMQLYDCLLTEVHERCKKGLSLAKRLNSSLAFFCYDLLSIIEPRQVFELVSLYLDKFSGVCQSVLHDC KLTFLQIICDHDLFVEMPGRDPSDRNYLASVLIQELFLTWDHDELSQRSKAARILVVLLCKHEFDARYQKPEDKLYIAQLYFPLVGQILDEMPVFYNLNA VEKREVLIVILQIMRNLDDTSLVKAWQQSIARTRLFFKLMEECLVLFEHRKPADGILMGSSSRSPVGDGPASPKYSDRLSPAINNYLSEASRQEVRPQGK TDNGYLWQRVNSQLSSPSQPYSLREALAQAQSSRIGASAQALRESLHPILRQKLELWEENLSAAVSLQVLEITEKFSMMAASHSIATDYGKLDCLTAIFT SFFSRNQPLSFWKALFPVFNNVFDLHGATLMARENDRFLKQVAFHLLRLAVFRNESVKKRAVIGLQILVRSAFYYFMQTARLRVMLTITLSELMSDVQVT QMKSDGMLEESGEAKRLRKSLEEVADELKTPDLLRECGVPESALVAVPKKLADNRWSWSEVKYLSDCLILALDASLEHALLGSVMTVDRYAAAESFYKLA MAFAPVPDLHIMWLLHLCDAHQEMQSWAEAAQCAVAVAGVVMQALVARNDGVWSKDHVISLRKICPMVSSEITAEASAAEVEGYGSSKLTVDSAVKYLQL ANRLFSQAELFHFCANILELVIPVHKSRRAYGQLAKCHTMLTDIYESILEQESSPIPFTDATYYRVGFYGERFGKLDRKEYVYREPRDVRLGDIMEKLSH IYESRMDDNHTLHIIPDSRQVKADELQPGVCYLQITAVDPVMEDEDLGSRRERIFSLSTGTVRARVFDRFLFDTPFTKNGKTQGGLEDQWKRRTVLQTEG SFPALVNRLLVMKSESLEFSPVENAIGMIETRTAALRNELEEPRSSEGDQLPRLQSLQRILQGSVAVQVNSGVLSVCTAFLSGEPATRLRSQELQQLIAA LLEFMAVCKRAIRVHFRLIGEEDQDFHTQLVNGFQSLTAELSHYIPAILAEL

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G16340		SPK1	SPIKE1, guanyl-nucleotide exch...		Potri.011G024000 [exp]	0	1	Pt-SPIKE1.3
AT4G19020		CMT2	chromomethylase 2 (.1)		Potri.003G100000 [exp]	1.41	0.9054
AT1G49340		ATPI4K ALPHA, A...	Phosphatidylinositol 3- and 4-...		Potri.009G113700 [exp]	1.73	0.9079	Pt-ALPHA.12
AT1G04160		XI-B, XI-8, ATX...	MYOSIN XI-8, ARABIDOPSIS THALI...		Potri.002G254300 [exp]	3.00	0.8948	XIB.1
AT5G16210			HEAT repeat-containing protein...		Potri.004G095900 [exp]	4.79	0.8797
AT3G43300		BEN1, ATMIN7	BFA-VISUALIZED ENDOCYTIC TRAFF...		Potri.006G216900 [exp]	4.89	0.8988
AT2G38650		GAUT7, LGT7	LIKE GLYCOSYL TRANSFERASE 7, g...		Potri.006G114300 [exp]	5.47	0.8942
AT2G27900			unknown protein		Potri.001G212600 [exp]	8.12	0.9010
AT2G07050		CAS1	cycloartenol synthase 1 (.1)		Potri.006G079300 [exp]	8.48	0.8950	CAS.3
AT3G58640			Mitogen activated protein kina...		Potri.014G142700 [exp]	10.09	0.8679
AT5G24710			Transducin/WD40 repeat-like su...		Potri.006G081800 [exp]	10.95	0.8879

Compare expression of checked genes

Potri.011G024000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.