Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16330 420 / 5e-147 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT3G11180 246 / 2e-78 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT2G38240 239 / 3e-76 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G05600 236 / 6e-75 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G22880 224 / 1e-70 TT18, TDS4, ANS, LDOX TANNIN DEFICIENT SEED 4, ANTHOCYANIDIN SYNTHASE, leucoanthocyanidin dioxygenase (.1.2) AT4G10490 215 / 4e-67 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G55970 214 / 2e-66 ATJRG21 jasmonate-regulated gene 21 (.1) AT4G10500 211 / 3e-65 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G51240 206 / 3e-63 TT6, F3'H, F3H TRANSPARENT TESTA 6, flavanone 3-hydroxylase (.1.2) AT5G24530 205 / 3e-63 DMR6 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G117100 [exp] 247 / 3e-79 AT5G05600 491 / 4e-175 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.008G069300 [exp] 247 / 3e-79 AT5G05600 528 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.006G101100 [exp] 244 / 5e-78 AT5G05600 462 / 1e-163 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G188000 [exp] 238 / 9e-76 AT5G05600 511 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.006G101200 [exp] 234 / 5e-74 AT5G05600 474 / 3e-168 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.011G150100 [exp] 230 / 6e-73 AT4G10490 501 / 2e-179 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G113100 [exp] 228 / 1e-71 AT4G22880 530 / 0.0 TANNIN DEFICIENT SEED 4, ANTHOCYANIDIN SYNTHASE, leucoanthocyanidin dioxygenase (.1.2) Potri.012G006300 [exp] 224 / 2e-70 AT5G24530 506 / 0.0 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.003G119100 [exp] 219 / 3e-68 AT4G22880 530 / 0.0 TANNIN DEFICIENT SEED 4, ANTHOCYANIDIN SYNTHASE, leucoanthocyanidin dioxygenase (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037292 [exp] 453 / 1e-159 AT4G16330 416 / 5e-145 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10035702 [exp] 357 / 3e-123 AT4G16330 347 / 4e-121 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10005037 [exp] 250 / 5e-80 AT3G11180 471 / 3e-166 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10004808 [exp] 239 / 3e-76 AT5G05600 457 / 5e-162 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10030185 [exp] 215 / 7e-67 AT4G10490 442 / 3e-156 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10004387 [exp] 214 / 2e-66 AT3G11180 509 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10032930 [exp] 214 / 2e-66 AT5G24530 504 / 0.0 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10015573 [exp] 213 / 2e-66 AT5G24530 510 / 0.0 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10014134 [exp] 211 / 6e-65 AT4G22880 559 / 0.0 TANNIN DEFICIENT SEED 4, ANTHOCYANIDIN SYNTHASE, leucoanthocyanidin dioxygenase (.1.2) Lus10006709 [exp] 212 / 1e-64 AT4G22880 573 / 0.0 TANNIN DEFICIENT SEED 4, ANTHOCYANIDIN SYNTHASE, leucoanthocyanidin dioxygenase (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [poplar] [flax] Cupin PF03171 [poplar] [flax] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily CL0029 [poplar] [flax] Cupin PF14226 [poplar] [flax] DIOX_N non-haem dioxygenase in morphine synthesis N-terminal
Representative CDS sequence Show only first row Show all	>Potri.011G024100.2 pacid=42781134 polypeptide=Potri.011G024100.2.p locus=Potri.011G024100 ID=Potri.011G024100.2.v4.1 annot-version=v4.1 ATGGATTTTCAGATGATGAGAGTGCAAAGCCTCTCTGAAGGGGGCATAGCAGAGGTGCCAGCCCAATATATCCAGCCCCCTGAGGAACGACCGCCCATTA GTGATGACCTCACAATAATAGATAACAGTGATGAAGAAAATGTCCCCATGATTGATGTTTTTGGGTTCGACTCGGAGCAGAGGGATACTGTTTGCAAACT AATTGGTGATGCCTGCGCCCAATGGGGCGCCTTCCATATTACCAACCATGGAGTTCCATTTGAGTTGCTGGACCAGATTAGGGGCGTAGGGTTATCTTTC TTTAAAGACTGCCCCGACAAAGATAAGCTCAAATATGCCTGTGATCCCAATTCTCCTGCTTCTCAGGGGTATGGCTCTAAGATGCTGCGCCCTGAAGCTG AAGCTGAAGCTGAAGCTGAAGCTGAAACCTCAACTGTTTTGGACTGGAGGGACTACTTCGATCACCATACCCTACCACTCTCTCGCCGTGACCCTTCTCG CTGGCCCCACTTCCCTTCCAATTACAGGCAAGTTGTGGCACATTATAGTGATGAGCTCAAATTGGTTGCACAGAAGCTGCTGGGGCTTATATCAGAGTCT CTGGGACTGCCAACTTCTTGCATTGAGGATGCTGTCGGGGAATTTTATCAAAACATTACTATAAGCTACTACCCTGCTTGTCCTCAACCGCATCTTACAC TGGGTCTTCAGTCCCATTCTGATATGGGTGCCATCACACTTCTCATCCAAGACCATGTCGGGGGCCTTCAGATTTTCAAAGACTCTCGGTGGATCACTGT CCATCCTCAATCTCATGCTATTCTTGTTATATTGGCTGACCAAATGGAGATTATAACCAATGGGAAGTATAGGAGTGCTCAACATCGAGCCATTACAAAT TCCAGCAGTCCACGGCTCTCAGTTGCCACCTTTCATGACCCGGCCAAGACGGTGAAAATATCCCCTGCTTTTGAGCTAACTAGCAACTCATCCCCGCCCA AGTACCGTGAAGTTAAGTATGGAGATTATGTGTCATCATGGTATACCAAAGGCCCAAAGGGGAAACGGAACATCGATGCCCTCCTCATCAATAGTTAG
AA sequence Show only first row Show all	>Potri.011G024100.2 pacid=42781134 polypeptide=Potri.011G024100.2.p locus=Potri.011G024100 ID=Potri.011G024100.2.v4.1 annot-version=v4.1 MDFQMMRVQSLSEGGIAEVPAQYIQPPEERPPISDDLTIIDNSDEENVPMIDVFGFDSEQRDTVCKLIGDACAQWGAFHITNHGVPFELLDQIRGVGLSF FKDCPDKDKLKYACDPNSPASQGYGSKMLRPEAEAEAEAEAETSTVLDWRDYFDHHTLPLSRRDPSRWPHFPSNYRQVVAHYSDELKLVAQKLLGLISES LGLPTSCIEDAVGEFYQNITISYYPACPQPHLTLGLQSHSDMGAITLLIQDHVGGLQIFKDSRWITVHPQSHAILVILADQMEIITNGKYRSAQHRAITN SSSPRLSVATFHDPAKTVKISPAFELTSNSSPPKYREVKYGDYVSSWYTKGPKGKRNIDALLINS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G16330			2-oxoglutarate (2OG) and Fe(II...		Potri.011G024100 [exp]	0	1
AT5G53330			Ubiquitin-associated/translati...		Potri.012G033300 [exp]	1.00	0.9704
AT1G11050			Protein kinase superfamily pro...		Potri.017G132800 [exp]	4.47	0.9509
AT5G20230		SAG14, ATBCB	SENESCENCE ASSOCIATED GENE 14,...		Potri.006G067400 [exp]	4.69	0.9499
AT3G15780			unknown protein		Potri.001G192500 [exp]	5.19	0.9512
AT4G25370			Double Clp-N motif protein (.1...		Potri.012G129800 [exp]	5.47	0.9657
AT1G49620		ICN6, ICK5, KRP...	KIP-RELATED PROTEIN 7, Cyclin-...		Potri.009G103600 [exp]	5.47	0.9523	Pt-ICK5.1,7
AT1G17170		ATGSTU24	Arabidopsis thaliana Glutathio...		Potri.011G140750 [exp]	6.00	0.9530
AT1G62960		ACS10	ACC synthase 10 (.1)		Potri.003G117700 [exp]	6.16	0.9432	Pt-ACS10.1
AT5G65250			unknown protein		Potri.005G073500 [exp]	6.48	0.9427
AT4G22240			Plastid-lipid associated prote...		Potri.004G003200 [exp]	8.24	0.9527	Pt-CHRC.3

Compare expression of checked genes

Potri.011G024100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.