Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26340 106 / 7e-25 F-box/RNI-like/FBD-like domains-containing protein (.1) AT5G38590 103 / 1e-24 F-box/RNI-like/FBD-like domains-containing protein (.1.2) AT3G49150 106 / 2e-24 F-box/RNI-like superfamily protein (.1) AT5G38390 105 / 2e-24 F-box/RNI-like superfamily protein (.1) AT3G52680 105 / 2e-24 F-box/RNI-like/FBD-like domains-containing protein (.1.2) AT1G06630 104 / 2e-24 F-box/RNI-like superfamily protein (.1.2.3) AT4G09920 103 / 2e-24 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) AT3G59240 103 / 7e-24 RNI-like superfamily protein (.1) AT4G10400 101 / 3e-23 F-box/RNI-like/FBD-like domains-containing protein (.1.2) AT5G41630 101 / 3e-23 F-box/RNI-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G024300 [exp] 363 / 3e-122 AT3G49030 116 / 3e-28 FBD, F-box and Leucine Rich Repeat domains containing protein (.1.2) Potri.011G024600 [exp] 168 / 1e-46 AT4G26350 95 / 9e-21 F-box/RNI-like/FBD-like domains-containing protein (.1) Potri.004G020200 [exp] 122 / 1e-31 AT2G04230 86 / 8e-19 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) Potri.011G121400 [exp] 97 / 1e-21 AT1G16930 149 / 9e-40 F-box/RNI-like/FBD-like domains-containing protein (.1) Potri.011G104200 [exp] 94 / 8e-21 AT3G26922 97 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.011G121500 [exp] 94 / 2e-20 AT4G14103 142 / 6e-38 F-box/RNI-like superfamily protein (.1.2) Potri.015G002100 [exp] 92 / 4e-20 AT4G03220 103 / 5e-24 Protein with RNI-like/FBD-like domains (.1) Potri.011G104300 [exp] 91 / 6e-20 AT3G26922 91 / 2e-20 F-box/RNI-like superfamily protein (.1) Potri.011G104100 [exp] 91 / 8e-20 AT3G26922 96 / 2e-22 F-box/RNI-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034414 [exp] 89 / 7e-19 AT1G13570 475 / 5e-167 F-box/RNI-like superfamily protein (.1) Lus10034415 [exp] 87 / 7e-19 AT1G13570 358 / 1e-123 F-box/RNI-like superfamily protein (.1) Lus10019144 [exp] 86 / 7e-18 AT1G13570 482 / 6e-170 F-box/RNI-like superfamily protein (.1) Lus10006318 [exp] 75 / 5e-14 AT1G69630 74 / 9e-14 F-box/RNI-like superfamily protein (.1) Lus10007058 [exp] 71 / 4e-13 AT5G56810 77 / 2e-15 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10042331 [exp] 69 / 4e-13 AT3G18150 67 / 7e-13 RNI-like superfamily protein (.1) Lus10029586 [exp] 69 / 2e-12 AT3G18150 78 / 2e-15 RNI-like superfamily protein (.1) Lus10023036 [exp] 68 / 2e-12 AT1G16930 66 / 3e-12 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10028366 [exp] 67 / 3e-12 AT1G13570 98 / 4e-23 F-box/RNI-like superfamily protein (.1) Lus10023425 [exp] 65 / 2e-11 AT5G56440 61 / 2e-10 F-box/RNI-like/FBD-like domains-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [poplar] [flax] F-box PF00646 [poplar] [flax] F-box F-box domain CL0022 [poplar] [flax] LRR PF07723 [poplar] [flax] LRR_2 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Potri.011G024200.4 pacid=42780534 polypeptide=Potri.011G024200.4.p locus=Potri.011G024200 ID=Potri.011G024200.4.v4.1 annot-version=v4.1 ATGGATGATTCTGGCGGGAAAAGCATAAACGATTTACCCGATGCTCTTCTTCAACACATACTGTCCTTCCTTGAAACAAAAGATGCTGTTAGAACAAGCA TATTGTCTAGGAAGTGGGAGCATCTGTGGAAGTCCCTTTCCAATCTTGAGTTTCATCAATGTTATTGTAAGGCTATGAGAAAGATTTTCATGAATTCTGT GGAGAGAGTGCTTCTTCTACGAGACTCCTCTAATATAGAAAAATTCACTCTTTCATGTGGAATTGATGATGCGACTCGAACTCGAACTTGGGTTTCTGCT GCAGTAAATCGTAATGTTAAAGAGTTATGTGTCAACTTTTACGAGGGGGGAGAATCAGAATCGTTCGTTTCCCCTCTATGCTTATTTACTTGTGCAACAT TAACCAAGTTGAAAATTACTTCACATGGTGTTCTCAGGCTTCCTTCTTCAATCTCTCTCCCGTGTCTAAAGATATTGAGCCTTCAACACGTTGTCTTTCC CGATGAGGACTCAACCCAACAAATATTGAATCTCCGAACCCTCGAGGAGTTGAAGATCAGTTACTGCGACTGGAAGAATCTTAAGGCCATTACCATTTCT GCTCCCAAACTTCGGAGCTTGGACATTTGTGAAATGCATAGGAACGATTTGAGAGGTTCAGATGCTTGTCATGTCATGATTTTTGGAACTGCTTTAACCT TTTTTTCTTTCAGTGGTGGATTTTGGGATGACTATTGCTTATTTAAATCATCATCACTGGTTGAGGCATATTTTCATGTTTATGGATGTTATGAGAGGTC AAGGGAAATTGCCCACCGTGCTTATAAGCATATTGTAGGGCTCTCTACTGTAAAACATTTAACGCTGACACCTGATGTTTTAAAGGTTCTAGATTGCGCG CCCGAGCTCTTTGCCCATACACCTACAGTCATGAATCTGACCTCGATACGATTATCTGATGAGTCGTTTTTTGAATTCCTGATCTTCACTACTGTAATAC CTTCTGGCACATTCTCTACAGCTCTCCTCATCTTAAAGCTCTTAGTTTCTCTAATCGAGCTAAGTGAGGAGTTGCCTACAAATTGTGCAAAGGATGACTG GATATTGGAGCCAGTGCCACCTTGCTTCCAGTCATGTCTGAAATGCATTGAGATACGTGATTTCGTAGGTCTTATTGATGAGTTGGATGCAGTTGCCTTG TTGCTGAAGAATGCAATAGCTTTGGATGATATGGTTATTACTTGTTCGACCACCGGATCAGAGGGTCAGAGGAAGATTCGCGAGCAGCTATTCGAGCTCC CAGGATGGTCAGAAATTGGCAGATTAAATTTCGTTTGA
AA sequence Show only first row Show all	>Potri.011G024200.4 pacid=42780534 polypeptide=Potri.011G024200.4.p locus=Potri.011G024200 ID=Potri.011G024200.4.v4.1 annot-version=v4.1 MDDSGGKSINDLPDALLQHILSFLETKDAVRTSILSRKWEHLWKSLSNLEFHQCYCKAMRKIFMNSVERVLLLRDSSNIEKFTLSCGIDDATRTRTWVSA AVNRNVKELCVNFYEGGESESFVSPLCLFTCATLTKLKITSHGVLRLPSSISLPCLKILSLQHVVFPDEDSTQQILNLRTLEELKISYCDWKNLKAITIS APKLRSLDICEMHRNDLRGSDACHVMIFGTALTFFSFSGGFWDDYCLFKSSSLVEAYFHVYGCYERSREIAHRAYKHIVGLSTVKHLTLTPDVLKVLDCA PELFAHTPTVMNLTSIRLSDESFFEFLIFTTVIPSGTFSTALLILKLLVSLIELSEELPTNCAKDDWILEPVPPCFQSCLKCIEIRDFVGLIDELDAVAL LLKNAIALDDMVITCSTTGSEGQRKIREQLFELPGWSEIGRLNFV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G26340			F-box/RNI-like/FBD-like domain...		Potri.011G024200 [exp]	0	1
AT2G04845			Acyl-CoA N-acyltransferases (N...		Potri.014G161800 [exp]	8.24	0.8098
AT5G65960			GTP binding (.1)		Potri.002G177100 [exp]	12.48	0.8529
AT5G15880			unknown protein		Potri.004G105400 [exp]	14.83	0.8161
AT1G66680		AR401	S-adenosyl-L-methionine-depend...		Potri.012G068600 [exp]	16.67	0.8517
AT2G34400			Pentatricopeptide repeat (PPR-...		Potri.018G145510 [exp]	16.79	0.7792
AT1G04555			unknown protein		Potri.010G064500 [exp]	18.24	0.8495
AT4G30960		CIPK6, SIP3, Sn...	SNF1-RELATED PROTEIN KINASE 3....		Potri.006G186200 [exp]	18.73	0.8144	CIPK6.2
AT4G14110		FUS7, EMB143, C...	FUSCA 7, EMBRYO DEFECTIVE 143,...		Potri.003G022001 [exp]	19.62	0.7763
AT2G38130		ATMAK3	Acyl-CoA N-acyltransferases (N...		Potri.011G139300 [exp]	19.79	0.8323	ATMAK3.5
AT4G30993			Calcineurin-like metallo-phosp...		Potri.006G187500 [exp]	22.91	0.8258

Compare expression of checked genes

Potri.011G024200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.