Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49030 116 / 3e-28 FBD, F-box and Leucine Rich Repeat domains containing protein (.1.2) AT3G03040 115 / 1e-27 F-box/RNI-like superfamily protein (.1) AT3G59240 114 / 2e-27 RNI-like superfamily protein (.1) AT1G69630 113 / 3e-27 F-box/RNI-like superfamily protein (.1) AT5G38390 112 / 1e-26 F-box/RNI-like superfamily protein (.1) AT3G58860 110 / 3e-26 F-box/RNI-like superfamily protein (.1) AT5G56420 110 / 3e-26 F-box/RNI-like/FBD-like domains-containing protein (.1.2) AT3G58940 109 / 2e-25 F-box/RNI-like superfamily protein (.1) AT1G58310 108 / 3e-25 F-box/RNI-like superfamily protein (.1) AT2G04230 107 / 3e-25 FBD, F-box and Leucine Rich Repeat domains containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G024200 [exp] 365 / 1e-122 AT4G26340 105 / 1e-24 F-box/RNI-like/FBD-like domains-containing protein (.1) Potri.011G024600 [exp] 167 / 3e-46 AT4G26350 95 / 9e-21 F-box/RNI-like/FBD-like domains-containing protein (.1) Potri.004G020200 [exp] 130 / 2e-34 AT2G04230 86 / 8e-19 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) Potri.011G121400 [exp] 118 / 7e-29 AT1G16930 149 / 9e-40 F-box/RNI-like/FBD-like domains-containing protein (.1) Potri.011G121500 [exp] 104 / 5e-24 AT4G14103 142 / 6e-38 F-box/RNI-like superfamily protein (.1.2) Potri.011G104300 [exp] 103 / 6e-24 AT3G26922 91 / 2e-20 F-box/RNI-like superfamily protein (.1) Potri.011G104100 [exp] 99 / 2e-22 AT3G26922 96 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.011G104200 [exp] 98 / 4e-22 AT3G26922 97 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.010G134200 [exp] 93 / 2e-20 AT1G13570 526 / 0.0 F-box/RNI-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034415 [exp] 80 / 2e-16 AT1G13570 358 / 1e-123 F-box/RNI-like superfamily protein (.1) Lus10034414 [exp] 81 / 4e-16 AT1G13570 475 / 5e-167 F-box/RNI-like superfamily protein (.1) Lus10019144 [exp] 79 / 9e-16 AT1G13570 482 / 6e-170 F-box/RNI-like superfamily protein (.1) Lus10029587 [exp] 73 / 1e-13 AT5G02930 74 / 3e-14 F-box/RNI-like superfamily protein (.1) Lus10038967 [exp] 73 / 2e-13 AT3G18150 77 / 9e-15 RNI-like superfamily protein (.1) Lus10007058 [exp] 71 / 6e-13 AT5G56810 77 / 2e-15 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10008502 [exp] 70 / 1e-12 AT5G44980 69 / 9e-13 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10029433 [exp] 69 / 1e-12 AT3G18150 79 / 8e-16 RNI-like superfamily protein (.1) Lus10027258 [exp] 68 / 2e-12 AT4G03220 74 / 9e-15 Protein with RNI-like/FBD-like domains (.1) Lus10006318 [exp] 69 / 3e-12 AT1G69630 74 / 9e-14 F-box/RNI-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [poplar] [flax] F-box PF00646 [poplar] [flax] F-box F-box domain CL0271 [poplar] [flax] PF08387 [poplar] [flax] FBD FBD
Representative CDS sequence Show only first row Show all	>Potri.011G024300.2 pacid=42780580 polypeptide=Potri.011G024300.2.p locus=Potri.011G024300 ID=Potri.011G024300.2.v4.1 annot-version=v4.1 ATGAAGGCCAAATCTTTGACTCGCAAAACCAAAAGAAAGAAGTTGAAGGCAGAAAAGGAAACCGATTCTGGTGAAAAAAGCATTGGCAATTTACCTGATG CTCTTCTTGAACATATCCTGTCGTTCCTCTCGACAGAAGCTGCTGTTAGAACCAGCATATTATCAAAGAAGTGGCTACATCTGTGGAAATCCACGACCAA CCTCACGTTTTTTGGTCTGAAATCTCCCAAAAGAAAGCTCTTCATGGATTTTGTGGATAGGGTTCTTGCTCTTCGTGGTCCTTCTAATATTGTACAATTC TATCTCTCATGTGAAGTCAAGGACGATCCATCTCGGGTTGGTACATGGATTTCTGCCGCTGTAAATCGTAACGTCAAGGATTTATATCTCGAACTTCGTG ATTTCGAAGCATCGTTTGTTTTGCCTCATTGCTTATTTAACTGCGAAACATTGACAGAGTTGGAAATAAATATGCCATATATTCTCAAGCTTCCTTCTTC AATATCCCTCTCATGTTTGAAGATATTGAACCTCTATGAGGTTATCTTTACTGATGACCACTCAACCCAGCAACTATTCAGTCTCCCAAACCTCGTGGAG TTGGAAATACATGAGTGCAATTGGATGAATCTCGTGGCTGTCAGCATTTCTGCTCCCAAACTTCAGAGCTTGGACATACATGAACCTTGTCAGAGCAGTC CGGCTTCTTTAGGTGGATGTCATGTCAGGATTTTTGGAACTCATCTCGCCGATTTTACTATCATCGGCACACTTTCAAATGACTATTGCTTATATGAATC TTCTGTGGTCGAGACATGCATTTCTATTTTTTCCGCTGCTGACAAACCGAGGCAAACTGCCTACCGTGCCTCTAAGCTCCTTGAAGGAATTTCTAGTGCT CAATCCTTATGTCTAACAACTAATGTTGTTGATGTTCTGGATGACGCACCTGAGCTGCTTGCTTTCCCGCTTGAATTTAGGAACTTGACCTCTTTATTGT TTGAATCAGAGGAGTCAAATCTTCATAGTGATGGATTTTGGCACATCATCTACAACTCTCCTCATCTTATAGCTCTTCAGTTTTATGGGGTCAGCATGCC TAAGGTTCCTTCAAATTGTCGAGAAGATTGGACATTGGACCCATCTCCACCTTGTTTCCTGTCATGTCTCAAATTCATTCAAGTCGGAAGATTTGGTGGT GATGAAAAGGAGCTGGATGCAGTTGGCTTTCTTTTAAAGAATGCTACAGCATTAGAATCTATGGATATAATTTATTCTGGTTCTGCGCGTAGGGATCAGG GTGTAGACAAGACGAACGAGATTCATCAACAGCTACTTGCCCTCCCTAGATGGTCAGAGATCGGCAATATCAATTTCGATTGA
AA sequence Show only first row Show all	>Potri.011G024300.2 pacid=42780580 polypeptide=Potri.011G024300.2.p locus=Potri.011G024300 ID=Potri.011G024300.2.v4.1 annot-version=v4.1 MKAKSLTRKTKRKKLKAEKETDSGEKSIGNLPDALLEHILSFLSTEAAVRTSILSKKWLHLWKSTTNLTFFGLKSPKRKLFMDFVDRVLALRGPSNIVQF YLSCEVKDDPSRVGTWISAAVNRNVKDLYLELRDFEASFVLPHCLFNCETLTELEINMPYILKLPSSISLSCLKILNLYEVIFTDDHSTQQLFSLPNLVE LEIHECNWMNLVAVSISAPKLQSLDIHEPCQSSPASLGGCHVRIFGTHLADFTIIGTLSNDYCLYESSVVETCISIFSAADKPRQTAYRASKLLEGISSA QSLCLTTNVVDVLDDAPELLAFPLEFRNLTSLLFESEESNLHSDGFWHIIYNSPHLIALQFYGVSMPKVPSNCREDWTLDPSPPCFLSCLKFIQVGRFGG DEKELDAVGFLLKNATALESMDIIYSGSARRDQGVDKTNEIHQQLLALPRWSEIGNINFD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G49030			FBD, F-box and Leucine Rich Re...		Potri.011G024300 [exp]	0	1
AT1G22220		AUF2	auxin up-regulated f-box prote...		Potri.001G021900 [exp]	8.94	0.6070
AT5G60440	MADS	AGL62	AGAMOUS-like 62 (.1)		Potri.017G047300 [exp]	10.95	0.5191
AT3G57770			Protein kinase superfamily pro...		Potri.005G106800 [exp]	13.89	0.6079
AT2G19320			unknown protein		Potri.006G073300 [exp]	23.32	0.5188
AT2G24400			SAUR-like auxin-responsive pro...		Potri.008G003900 [exp]	26.83	0.4917	SAUR49
AT2G18950		ATHPT, VTE2, TP...	VITAMIN E 2, homogentisate phy...		Potri.018G022000 [exp]	37.52	0.4894
AT1G61566		RALFL9	ralf-like 9 (.1)		Potri.018G007600 [exp]	40.80	0.4754
AT4G30390			unknown protein		Potri.019G051850 [exp]	77.42	0.4605
AT1G43730			RNA-directed DNA polymerase (r...		Potri.004G000150 [exp]	92.46	0.4399
AT5G13620			unknown protein		Potri.008G045000 [exp]	98.43	0.4511

Compare expression of checked genes

Potri.011G024300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.