Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26350 95 / 8e-21 F-box/RNI-like/FBD-like domains-containing protein (.1) AT5G56420 95 / 9e-21 F-box/RNI-like/FBD-like domains-containing protein (.1.2) AT3G51530 90 / 5e-19 F-box/RNI-like/FBD-like domains-containing protein (.1) AT3G26922 86 / 2e-18 F-box/RNI-like superfamily protein (.1) AT4G14096 88 / 3e-18 F-box/RNI-like superfamily protein (.1) AT4G14103 83 / 4e-17 F-box/RNI-like superfamily protein (.1.2) AT4G26340 83 / 8e-17 F-box/RNI-like/FBD-like domains-containing protein (.1) AT4G00315 83 / 8e-17 F-box/RNI-like/FBD-like domains-containing protein (.1) AT4G10400 82 / 1e-16 F-box/RNI-like/FBD-like domains-containing protein (.1.2) AT3G49040 82 / 1e-16 F-box/RNI-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G024300 [exp] 162 / 3e-44 AT3G49030 116 / 3e-28 FBD, F-box and Leucine Rich Repeat domains containing protein (.1.2) Potri.011G024200 [exp] 113 / 8e-27 AT4G26340 105 / 1e-24 F-box/RNI-like/FBD-like domains-containing protein (.1) Potri.004G020200 [exp] 98 / 1e-22 AT2G04230 86 / 8e-19 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) Potri.011G121500 [exp] 77 / 6e-15 AT4G14103 142 / 6e-38 F-box/RNI-like superfamily protein (.1.2) Potri.011G121400 [exp] 77 / 8e-15 AT1G16930 149 / 9e-40 F-box/RNI-like/FBD-like domains-containing protein (.1) Potri.014G163866 [exp] 74 / 3e-14 AT4G14103 79 / 2e-16 F-box/RNI-like superfamily protein (.1.2) Potri.015G002100 [exp] 70 / 1e-12 AT4G03220 103 / 5e-24 Protein with RNI-like/FBD-like domains (.1) Potri.011G104100 [exp] 67 / 1e-11 AT3G26922 96 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.001G322900 [exp] 65 / 5e-11 AT3G18150 166 / 1e-45 RNI-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006318 [exp] 67 / 2e-11 AT1G69630 74 / 9e-14 F-box/RNI-like superfamily protein (.1) Lus10029586 [exp] 66 / 3e-11 AT3G18150 78 / 2e-15 RNI-like superfamily protein (.1) Lus10029587 [exp] 65 / 4e-11 AT5G02930 74 / 3e-14 F-box/RNI-like superfamily protein (.1) Lus10028366 [exp] 60 / 9e-10 AT1G13570 98 / 4e-23 F-box/RNI-like superfamily protein (.1) Lus10028368 [exp] 53 / 2e-08 AT1G13570 69 / 1e-14 F-box/RNI-like superfamily protein (.1) Lus10018509 [exp] 56 / 4e-08 AT4G03220 401 / 1e-135 Protein with RNI-like/FBD-like domains (.1) Lus10035564 [exp] 55 / 6e-08 AT3G58900 79 / 1e-16 F-box/RNI-like superfamily protein (.1.2.3.4) Lus10001507 [exp] 55 / 1e-07 AT5G56440 91 / 6e-20 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10034415 [exp] 54 / 1e-07 AT1G13570 358 / 1e-123 F-box/RNI-like superfamily protein (.1) Lus10024701 [exp] 51 / 1e-07 AT1G78760 70 / 4e-15 F-box/RNI-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [poplar] [flax] F-box PF00646 [poplar] [flax] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Potri.011G024600.1 pacid=42781432 polypeptide=Potri.011G024600.1.p locus=Potri.011G024600 ID=Potri.011G024600.1.v4.1 annot-version=v4.1 ATGCGTGAAAGTGATCATGAGATCGATGCCAAAAGCCTGAAGCAGAAGAAGTTACCGAACAACATGGATGAGGAAATAAATATGATAGAAAATCTGCCAG ACGCCATGCTTCTGCACATCTTGTCTTTCCTTCCGGCAAAAGATGCCCTCAAAACTAGCATATTATCTAAGAGATGGCGACATCTATGGATGTCTGTTTC CAATCTTTACTTTGAAGAATGGAGACCTGATAAATTTGTGATGTTCATGAATTCTGCAGAAAGGGCGATGATGTGTCGTGATGTTCCAAGAATTGAGAAA TTCTCTCTCTCAAGTCATATGTTAAATAGTGCATGTATTAATGCACTGATAAGTAATGCACTGAGCTTTAAAGTGCAAGACTTTTCACTTCGCCTTGTCT ATGTTGGTGTGCCAATATTGTTACCTCATCACCTTTTCTCTTGTCCAACACTAACTGTTCTGAATCTAGAAGAAGTTACTCAATTTCCTTGCACTGCATG TCTTCCCAATCTGAAGAAGGTAAGATTGTCATGTTGTTTACTTCCGCATCAGCAGTCACTGTTGCAGTTCTTTTCCGGTTGCCCAAAATTGCAGAAGCTG ATTCTGAATCGATGCTTTTGGAGGGATGCAAATCTTGGTTTTATTTCTACTCCCATGCCTGAACCGGTGGACATTACTCAACTTTCTTCTACTACATGTC TTCCCGATCTGAAGGAGTTGGAATTGTCATTTTGTCTACTTCCATATGGGCAGTCAATGGTGCAGTTCTTTGGTGATTGCCCAAAATTACAGAAGCTAAC TCTGAAAGAATGCCAATGGGGGCTAGCAAAGTGTCTCTACATTTCTACTCCCATGCTCGAATCCTTGGTCATTTGTGATGCTACTTCGAGTAGTGGTTGT AAAGTCGTGATTTCTGGAGCGAATATTAAATCCTTCTCCTACCACGGTGATCTCACAACTACTTATTGTTTATGTTCATCCTCGATAGTTGATGCATGTA TACATGTGAGTTCAAAAGGTATGATTGAAAGGGAAGGGAGAGAAAAAGAAGTTGCCCATCGTCTCCATAAGCTTATTATGGAGTGCTGTAATGTGAAACA CTTGGAGCTATCACCTGATACTCTTGAGGCTCTTGCTTATGCAGAAGAACTAGATCTTCCAGTGTTTCAGAGATTGACTCGTCTTGAATTGAAGAGGAAG AGTGTGGATTTATCTTGCAGAGCACTGAATAGATTGCTACAGAAATTGCCTCATCTTGACTGTCTTGATTTCCGAATGGGTATCTTCTTGTCTAAGAAAC ATAAAAATTTCGCATTGGATCCATTGCCTCCTTGTTTCTTGACACAACTCAAGATCATCAAGATCCACACATTCTCTTTAACTGACGAGGAATTGCATGC TGTCGGGATTTTATTCAGAGTTTCAACAGTTTTAGAGAAGGTGTATATTTCAGGTGGCAGGTTGAACCAGAATAAGATATCCATGCTCGCTAGAGAATCA AAATTTGAAATCATTTCCATGTGA
AA sequence Show only first row Show all	>Potri.011G024600.1 pacid=42781432 polypeptide=Potri.011G024600.1.p locus=Potri.011G024600 ID=Potri.011G024600.1.v4.1 annot-version=v4.1 MRESDHEIDAKSLKQKKLPNNMDEEINMIENLPDAMLLHILSFLPAKDALKTSILSKRWRHLWMSVSNLYFEEWRPDKFVMFMNSAERAMMCRDVPRIEK FSLSSHMLNSACINALISNALSFKVQDFSLRLVYVGVPILLPHHLFSCPTLTVLNLEEVTQFPCTACLPNLKKVRLSCCLLPHQQSLLQFFSGCPKLQKL ILNRCFWRDANLGFISTPMPEPVDITQLSSTTCLPDLKELELSFCLLPYGQSMVQFFGDCPKLQKLTLKECQWGLAKCLYISTPMLESLVICDATSSSGC KVVISGANIKSFSYHGDLTTTYCLCSSSIVDACIHVSSKGMIEREGREKEVAHRLHKLIMECCNVKHLELSPDTLEALAYAEELDLPVFQRLTRLELKRK SVDLSCRALNRLLQKLPHLDCLDFRMGIFLSKKHKNFALDPLPPCFLTQLKIIKIHTFSLTDEELHAVGILFRVSTVLEKVYISGGRLNQNKISMLARES KFEIISM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G26350			F-box/RNI-like/FBD-like domain...		Potri.011G024600 [exp]	0	1
AT1G63855			Putative methyltransferase fam...		Potri.005G109000 [exp]	4.79	0.8366
AT4G04880			adenosine/AMP deaminase family...		Potri.011G000100 [exp]	10.81	0.8299
AT4G27190			NB-ARC domain-containing disea...		Potri.001G433700 [exp]	18.97	0.7958
AT4G37370		CYP81D8	"cytochrome P450, family 81, s...		Potri.014G020432 [exp]	24.97	0.8018
AT5G63890		HISN8, ATHDH	HISTIDINE BIOSYNTHESIS 8, hist...		Potri.011G163400 [exp]	26.38	0.7615
AT1G60160			Potassium transporter family p...		Potri.010G094400 [exp]	28.30	0.8012
AT4G27190			NB-ARC domain-containing disea...		Potri.001G432366 [exp]	39.98	0.7978
AT3G49050			alpha/beta-Hydrolases superfam...		Potri.015G145900 [exp]	41.23	0.7584
AT4G27220			NB-ARC domain-containing disea...		Potri.001G426660 [exp]	66.93	0.7441
AT5G60440	MADS	AGL62	AGAMOUS-like 62 (.1)		Potri.017G124000 [exp]	85.93	0.7580

Compare expression of checked genes

Potri.011G024600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.