Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G04885 364 / 1e-111 PCFS4 PCF11P-similar protein 4 (.1) AT5G43620 162 / 5e-43 Pre-mRNA cleavage complex II (.1) AT1G66500 162 / 6e-43 C2H2ZnF Pre-mRNA cleavage complex II (.1) AT2G36480 122 / 3e-28 ENTH/VHS family protein (.1.2.3) AT2G36485 60 / 3e-10 ENTH/VHS family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G020300 [exp] 1502 / 0 AT4G04885 386 / 9e-120 PCF11P-similar protein 4 (.1) Potri.017G017800 [exp] 182 / 3e-48 AT4G04885 194 / 3e-53 PCF11P-similar protein 4 (.1) Potri.006G115600 [exp] 175 / 1e-44 AT2G36480 268 / 3e-76 ENTH/VHS family protein (.1.2.3) Potri.007G134000 [exp] 95 / 6e-20 AT4G04885 101 / 2e-22 PCF11P-similar protein 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007652 [exp] 818 / 0 AT4G04885 343 / 1e-104 PCF11P-similar protein 4 (.1) Lus10006766 [exp] 775 / 0 AT4G04885 650 / 0.0 PCF11P-similar protein 4 (.1) Lus10018357 [exp] 396 / 1e-122 AT4G04885 653 / 0.0 PCF11P-similar protein 4 (.1) Lus10020058 [exp] 382 / 8e-118 AT4G04885 633 / 0.0 PCF11P-similar protein 4 (.1) Lus10014370 [exp] 174 / 3e-44 AT2G36480 248 / 2e-69 ENTH/VHS family protein (.1.2.3) Lus10023867 [exp] 172 / 3e-43 AT2G36480 246 / 2e-68 ENTH/VHS family protein (.1.2.3) Lus10035573 [exp] 165 / 3e-41 AT2G36480 362 / 4e-110 ENTH/VHS family protein (.1.2.3) Lus10027715 [exp] 163 / 1e-40 AT2G36480 363 / 2e-110 ENTH/VHS family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF04818 [poplar] [flax] CID CID domain
Representative CDS sequence Show only first row Show all	>Potri.011G024800.3 pacid=42780260 polypeptide=Potri.011G024800.3.p locus=Potri.011G024800 ID=Potri.011G024800.3.v4.1 annot-version=v4.1 ATGCAATCCACAAAACTCCTAAACCCTAAAACCGCCACCAAGGCAGCGGAAGCCGTTACCAACACCATGCCAAATGAGCTGCTGCCGCAGAAATCCCCAG CATCTTCAATAATGGACAAGTTCAGGTATTTATTGAAGCAGCGACAACAATCGGCGGTGGAGGAAGGTGGCGGCTTGAGTACGGAGGATATGGTGGAGAT TTATGAGACGGTTTTGAATGAATTAACGTTTAATTCAAAACCTATTATCACTGATTTGACTATTATTGCCGGAGAACTGAGGGAGCACGGTGAGGGTATT GCTGATGCTCTTTGTGGCCGCATTGTCGAGGTCCCAGTAGATCTAAAGCTACCTTCGTTATATCTTTTAGATAGCATTGTCAAGAACATCGGCCGTGAAT ACATTGGGTATTTTTCTTCCCGTTTGCCTGAGGTTTTCTGTGAGGCATACGGACAAGTTGACCCTAGATTATATCCTTCAATGCGCCACCTTTTTGGCAC TTGGTCATCTGTGTTTCCATCTTCTGTACTTCGGAAGATTGAGACTCAACTGCAGTTGTCTTCACAAATTAATAATCAGTCATCAAGTTTGACTTCCTTG AAGGCTTCTGAATCACCCAGACCAAGTCATGGCATACATGTGAACCCAAAATACTTACGTCAGATGGATTCAAGTAGAGATAATAATGTTCAGCACACAA AGGGAACTTCAAATCTAAAAATGTATGGTCACAAACCTGCTGTTGGATATGATGAATATGAAACTGATCAAGCAGAGGTCATATCTTCACAGGTTGGAGT CGACCGTGCATCTCTCACTCTTGGATCTAATAAGCTGCAGCCATCATCAACTTCCAGGCTTGCAAGACGCTTGTCGCCTTCAACAACCGGAGCTGAGAGG CCTTCGTCTTCAGAAATCGATGACTTTGCAGCTGGAAATTCTCCCCGAAGGTTCGTGGAGGGGTTGTCCCCATCTCATCCTCCATTTGATTATGGACATG GCAGAGTTGTTGTCAGAGATGATGAGACAAATGAATTGAGAAGAAAACACTATTCTGATGATAACCATTACCGATTTGAAGCTTCTGCCAGATCTCTCAG CAATGGACATGAGCAACAAGGACCCAGAGCTTTAATAGATGCATATGGGGATGATAGGGGGAAGAGAATTCCAAATAGTAAACCATTGCACATTGAACAG TTGGCTGTAATTGGCATGCATAATAAGGTGGCTCCAAGATCATGGCAGAATACTGAAGAGGAGGAATTTGATTGGGAAGATATGAGCCCTACTTTGTTAG ATCGTGGTAGGAGCAATGATTTCTTGCCACCATCTGTTCCACCTTTTGGAAGTGTTGTTCCAAGGCCTGGCTTTGGAAGGCTAAATGCTATCCGTGCAGA CTCTGATATTAGGAGCAATGGGTCTAGTCTGACTCCAATGGCTTTGGTGGATGACTCCTCTAATATGGGTGGAGATGCAGTCTCGATTCTTGGTTCTGGC CGTGGATCAACAAGCAAGATGCCTGGACTCCTGACTGAGAGAAATCAGATATCGGGTTCTCGTTATTCTCAAGAAGCTAGGAATTTGCCGCCTCACATCC GTCAGCCATCACGTCTCCTGAATGCCAAAGGAAGAGGAAGGGATTTCCAGATGCCCTTATCTGGAAGTGGTGTATCCTCTTTGGGTGGTGAGAATTTCAA TCCACTTGTTGAAAAACTTCCAGATATGGATGCAAAGCTTGTTAGGCCTCCTGCGATTGCATCAAGATTGGGTTCTAGTATTGACTCTAATAGTTCTGGT ACCTGGTCAAGTGCTGTGCTACCATTATCAGGGGCCTGGCCTCCAGTAAATGTACACAAGTCTCTCCCACCTCCTGTGCATTCTACTTTTCCACCAGAAA AGCAGAGTAGAAGTCAGTTTGATCCAGTAAATACCAGCAGTACTGTCACAAATCAGGCTTTGCAAAAAGCTTCAGTTATGCCTGAACAATCATTTAATAG TTTTGAGAGCAAAGATTATGTTTTGATGAAGCCAACACCATTGCCTAATCAACATGCTGCTTTGAATCAGCAAAACCAGGCACATTTTAATCCTTTTCAG CCAAAGTTTCTTCCATCTCATGAAGCCCGGGAAAATTTTCATCCATCTGGGATAGCTTTACTGCCACCTCGTCCACTGGCACGACCAATGAATCATGGAT ACACCACACACGGGCATGGTTCCTCAAATGCGCTACCTTCTGTACAACTGCCTTTAGCGGTCAGCAATGTTCCAAACACCTTGCATTCACAGGTGGGGGT TCGGCCACCTTTGCCACAAGGTCCTCCTCAAACGATGCCTTTCCCTCAGAATGCTAGTTCAGGTGCCCCCGCCCAACCATCTGGCATTGCATTTTCTGGT TTGATTAATTCTCTCATGGCTCAAGGTTTGATCACAATGACAAAACAAACACCTGTACAGGACTCTGTAGGGCTTGAGTTCAATGCTGACCTTCTCAAAT TGCGCTATGAATCGGCAATAAGTGCATTATATTCTGACCTTCCAAGACAGTGCACAACATGTGGCCTTCGATTAAAGTGTCAAGAAGAGCACAGTAGTCA CATGGATTGGCATGTTACTAAGAACCGGATGTCCAAAAACCGTAAGCAGAACCCTTCTCGCAAGTGGTTTGTAAGTGCAAGTATGTGGCTTAGTGGTGCA GAGGCATTGGGAACTGATGCAGTTCCTGGATTTTTACCCACTGAGACCATCGTGGAGAAGAAGGATGACGATGAAATGGCTGTTCCTGCTGACGAAGAGC AGAGTACATGTGCATTATGTGGAGAGCCTTTTGATGATTTCTACAGTGATGAAACTGAGGAATGGATGTATAAAGGAGCTGTCTACCTGAATGCTCCTGA TGGGTCAACGGCAGACATGGATAGGTCTCAGCTAGGCCCTATTGTACATGCTAAATGCAGGTCCGATTCTAGTGGGGTTCCCTCTGAAGATTTTGGACAT GAAGAAGGGGGCAATACTGAAGAAGGTAGTCGAAAACGAATGCGGAGTTAA
AA sequence Show only first row Show all	>Potri.011G024800.3 pacid=42780260 polypeptide=Potri.011G024800.3.p locus=Potri.011G024800 ID=Potri.011G024800.3.v4.1 annot-version=v4.1 MQSTKLLNPKTATKAAEAVTNTMPNELLPQKSPASSIMDKFRYLLKQRQQSAVEEGGGLSTEDMVEIYETVLNELTFNSKPIITDLTIIAGELREHGEGI ADALCGRIVEVPVDLKLPSLYLLDSIVKNIGREYIGYFSSRLPEVFCEAYGQVDPRLYPSMRHLFGTWSSVFPSSVLRKIETQLQLSSQINNQSSSLTSL KASESPRPSHGIHVNPKYLRQMDSSRDNNVQHTKGTSNLKMYGHKPAVGYDEYETDQAEVISSQVGVDRASLTLGSNKLQPSSTSRLARRLSPSTTGAER PSSSEIDDFAAGNSPRRFVEGLSPSHPPFDYGHGRVVVRDDETNELRRKHYSDDNHYRFEASARSLSNGHEQQGPRALIDAYGDDRGKRIPNSKPLHIEQ LAVIGMHNKVAPRSWQNTEEEEFDWEDMSPTLLDRGRSNDFLPPSVPPFGSVVPRPGFGRLNAIRADSDIRSNGSSLTPMALVDDSSNMGGDAVSILGSG RGSTSKMPGLLTERNQISGSRYSQEARNLPPHIRQPSRLLNAKGRGRDFQMPLSGSGVSSLGGENFNPLVEKLPDMDAKLVRPPAIASRLGSSIDSNSSG TWSSAVLPLSGAWPPVNVHKSLPPPVHSTFPPEKQSRSQFDPVNTSSTVTNQALQKASVMPEQSFNSFESKDYVLMKPTPLPNQHAALNQQNQAHFNPFQ PKFLPSHEARENFHPSGIALLPPRPLARPMNHGYTTHGHGSSNALPSVQLPLAVSNVPNTLHSQVGVRPPLPQGPPQTMPFPQNASSGAPAQPSGIAFSG LINSLMAQGLITMTKQTPVQDSVGLEFNADLLKLRYESAISALYSDLPRQCTTCGLRLKCQEEHSSHMDWHVTKNRMSKNRKQNPSRKWFVSASMWLSGA EALGTDAVPGFLPTETIVEKKDDDEMAVPADEEQSTCALCGEPFDDFYSDETEEWMYKGAVYLNAPDGSTADMDRSQLGPIVHAKCRSDSSGVPSEDFGH EEGGNTEEGSRKRMRS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G04885		PCFS4	PCF11P-similar protein 4 (.1)		Potri.011G024800 [exp]	0	1
AT2G32630			Pentatricopeptide repeat (PPR-...		Potri.003G008900 [exp]	1.73	0.9373
AT4G16280		FCA	RNA binding;abscisic acid bind...		Potri.010G147900 [exp]	2.00	0.9338
AT5G27650			Tudor/PWWP/MBT superfamily pro...		Potri.013G018700 [exp]	3.00	0.9336
AT5G45190			Cyclin family protein (.1.2)		Potri.005G097400 [exp]	3.00	0.9197
AT5G24810			ABC1 family protein (.1.2)		Potri.018G000101 [exp]	3.16	0.9141
AT5G18390			Pentatricopeptide repeat (PPR)...		Potri.019G025700 [exp]	3.16	0.9303
AT5G13950			unknown protein		Potri.002G237800 [exp]	3.31	0.9132
AT5G22450			unknown protein		Potri.010G238400 [exp]	3.74	0.9262
AT5G27650			Tudor/PWWP/MBT superfamily pro...		Potri.005G026800 [exp]	4.89	0.9292
AT1G79020			Enhancer of polycomb-like tran...		Potri.014G000600 [exp]	5.83	0.8821

Compare expression of checked genes

Potri.011G024800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.