Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G28237 587 / 0 Pyridoxal-5'-phosphate-dependent enzyme family protein (.1) AT4G27070 543 / 0 TSB2 tryptophan synthase beta-subunit 2 (.1) AT5G54810 540 / 0 ATTSB1, TRP2, TRPB, TSB1 TRYPTOPHAN BIOSYNTHESIS B, TRYPTOPHAN BIOSYNTHESIS 2, tryptophan synthase beta-subunit 1 (.1) AT5G38530 115 / 8e-28 TSBtype2 tryptophan synthase beta type 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G420300 [exp] 545 / 0 AT4G27070 754 / 0.0 tryptophan synthase beta-subunit 2 (.1) Potri.011G136000 [exp] 545 / 0 AT5G54810 755 / 0.0 TRYPTOPHAN BIOSYNTHESIS B, TRYPTOPHAN BIOSYNTHESIS 2, tryptophan synthase beta-subunit 1 (.1) Potri.017G109600 [exp] 119 / 4e-29 AT5G38530 828 / 0.0 tryptophan synthase beta type 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018358 [exp] 585 / 0 AT5G28237 555 / 0.0 Pyridoxal-5'-phosphate-dependent enzyme family protein (.1) Lus10043059 [exp] 541 / 0 AT4G27070 766 / 0.0 tryptophan synthase beta-subunit 2 (.1) Lus10011154 [exp] 541 / 0 AT4G27070 766 / 0.0 tryptophan synthase beta-subunit 2 (.1) Lus10007651 [exp] 488 / 3e-171 AT5G28237 483 / 4e-169 Pyridoxal-5'-phosphate-dependent enzyme family protein (.1) Lus10008278 [exp] 108 / 9e-29 AT5G28237 104 / 3e-28 Pyridoxal-5'-phosphate-dependent enzyme family protein (.1) Lus10000306 [exp] 107 / 5e-25 AT5G38530 779 / 0.0 tryptophan synthase beta type 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF00291 [poplar] [flax] PALP Pyridoxal-phosphate dependent enzyme
Representative CDS sequence Show only first row Show all	>Potri.011G024900.3 pacid=42780276 polypeptide=Potri.011G024900.3.p locus=Potri.011G024900 ID=Potri.011G024900.3.v4.1 annot-version=v4.1 ATGGATAAGACTTGCAGTATCCACACAACTTTCTTGAATCGCCAATTACACGGTGGTTTATGTCCTGCCACCAAGCACATAAGCCTAATAACAACTGATA AGAGAAGAACTGGAAGTGGCCAAACAGTACTCTGTTCACTTGTTACTCCTAAAACTATGAATACGAGGACATTGATTGAAAGACAGGTTCCCCGTGAGGT GTCAATGCCAGCAAAATTTGGCATGTTTGGAGGGAATTTTGTGCCTGAGACCCTAATCACTAGTTTGAAGAAGCTGGAAGCTGAATTCATATATGCTTTA CAGGATACTGAATTTCAGGAGGAGCTTGCGACGGCCCTGAGAGACTACGTAGGAAGGGAAACACCTCTGTATTTTGCTCAAGGATTGACAAATTACTACA AGAATAAAGATGGAGAAGGGGCAGAAATTTACCTTAAGAGGGAGGATCTCAATCATTGTGGAGCACACAAGATGAACAACGCTGTTGCGCAGACGATGAT TGCCAAACGCATGGGCCTGAAAAGTGTTGTGGCAGCCACTGGTGCTGGACAACATGGTGTTGCAACTGCAGCTGCATGTGCCAAGCTGTCTTTGTCTTGC ACTGTCTTCATGGGCTCTGATGATATGGAAAAACAATCCTCAAACGTACTGTTAATGAAACTATTTGGTGCTCAGGTTAAACCTGTGGAAAGAAGTTTTA AAGAAGCAAGCTCAGAGGCAATCAGGGAATGGGCAAGTAACTTAGAGACAAGCTACTACCTGACAGGCACGGCCGTGGGGCCTCATCCATGTCCAAGCAT GGTCTGTGAATTTCAGTCTGTGATTGGAAAGGAGACAAGGAGGCAAGCAATGGAGAAATGGGGTGGCAAGCCAGATGTGTTGATTGCCTGTATCGGGAGT GGGTCTAATGCAATGGGGTTGTTCCATGAATTCATAGAAGATGAAGATGTGAGGTTGATAGGAGTTGAGGCTGCAGGGTTTGGCTTGGATAGTGGGAAAC ATGCTGCAACTCTGAGTAAAGGAGAAGTTGGGGTCTATCATGGAGCCATGAGCTATTTGTTGGAAGATGAAGAAGGACAAATAATACGACCACACTCAAT CGCTGTGGGGCTGGAATATCCAGGGGTTAGTCCGCAGCTGAGCTTTCTTAAGGACACAGAACGTGCTGAGTTTTATTCTGCCACAGATAAAGAGGCTGTA GATGCATACCTAAGGCTAAGCAGATTAGAAGGCATAATTCCATCCTTGGAGGCAGCTCATGCACTGGCATACCTCGACAAAGTTTGTCCTACTTTACCAA ATGCCACCAAAGTCATAGTAAATTGTAGCGGTCGAGGAGATAAAGATGCAGGAATGGTTCTTGACCACAGACTTGAGATAAATTAA
AA sequence Show only first row Show all	>Potri.011G024900.3 pacid=42780276 polypeptide=Potri.011G024900.3.p locus=Potri.011G024900 ID=Potri.011G024900.3.v4.1 annot-version=v4.1 MDKTCSIHTTFLNRQLHGGLCPATKHISLITTDKRRTGSGQTVLCSLVTPKTMNTRTLIERQVPREVSMPAKFGMFGGNFVPETLITSLKKLEAEFIYAL QDTEFQEELATALRDYVGRETPLYFAQGLTNYYKNKDGEGAEIYLKREDLNHCGAHKMNNAVAQTMIAKRMGLKSVVAATGAGQHGVATAAACAKLSLSC TVFMGSDDMEKQSSNVLLMKLFGAQVKPVERSFKEASSEAIREWASNLETSYYLTGTAVGPHPCPSMVCEFQSVIGKETRRQAMEKWGGKPDVLIACIGS GSNAMGLFHEFIEDEDVRLIGVEAAGFGLDSGKHAATLSKGEVGVYHGAMSYLLEDEEGQIIRPHSIAVGLEYPGVSPQLSFLKDTERAEFYSATDKEAV DAYLRLSRLEGIIPSLEAAHALAYLDKVCPTLPNATKVIVNCSGRGDKDAGMVLDHRLEIN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G28237			Pyridoxal-5'-phosphate-depende...		Potri.011G024900 [exp]	0	1
AT2G29110		ATGLR2.8	glutamate receptor 2.8 (.1)		Potri.006G172801 [exp]	2.00	0.9787
AT4G39950		CYP79B2	"cytochrome P450, family 79, s...		Potri.013G157200 [exp]	3.46	0.9786
AT1G58120			unknown protein		Potri.002G104500 [exp]	7.48	0.9431
AT5G65160		TPR14	tetratricopeptide repeat 14, t...		Potri.002G094800 [exp]	14.49	0.9249
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Potri.002G150200 [exp]	16.12	0.9540	CYP76T2,Pt-CYP76.4
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Potri.002G150400 [exp]	18.16	0.9530
AT1G61680		ATTPS14	terpene synthase 14 (.1.2)		Potri.004G030200 [exp]	21.65	0.9484
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Potri.002G150300 [exp]	24.95	0.8866
AT5G36110		CYP716A1	"cytochrome P450, family 716, ...		Potri.018G134300 [exp]	25.45	0.9419
AT5G05580		AtFAD8, SH1, FA...	fatty acid desaturase 8 (.1.2)		Potri.016G117500 [exp]	25.65	0.8800	Pt-FAD3.5

Compare expression of checked genes

Potri.011G024900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.