Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-ATML1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21750 1164 / 0 HD ATML1 MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) AT4G04890 1163 / 0 HD PDF2 protodermal factor 2 (.1) AT1G05230 1046 / 0 HD HDG2 homeodomain GLABROUS 2 (.1.2.3.4) AT4G00730 725 / 0 HD AHDP, ANL2 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) AT3G61150 711 / 0 HD HD-GL2-1, HDG1 HOMEODOMAIN-GLABRA2 1, homeodomain GLABROUS 1 (.1) AT2G32370 693 / 0 HD HDG3 homeodomain GLABROUS 3 (.1) AT1G73360 602 / 0 HD ATHDG11, HDG11, EDT1 ENHANCED DROUGHT TOLERANCE 1, homeodomain GLABROUS 11 (.1) AT1G17920 598 / 0 HD HDG12 homeodomain GLABROUS 12 (.1) AT5G52170 580 / 0 HD HDG7 homeodomain GLABROUS 7 (.1) AT5G46880 571 / 0 HD HDG5, HB-7 HOMEODOMAIN GLABROUS 5, homeobox-7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G020400 [exp] 1363 / 0 AT4G04890 1185 / 0.0 protodermal factor 2 (.1) Potri.014G152000 [exp] 1114 / 0 AT1G05230 1179 / 0.0 homeodomain GLABROUS 2 (.1.2.3.4) Potri.002G230200 [exp] 1107 / 0 AT1G05230 1159 / 0.0 homeodomain GLABROUS 2 (.1.2.3.4) Potri.002G154700 [exp] 791 / 0 AT4G00730 1057 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Potri.014G075200 [exp] 789 / 0 AT4G00730 1045 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Potri.015G034100 [exp] 666 / 0 AT1G73360 927 / 0.0 ENHANCED DROUGHT TOLERANCE 1, homeodomain GLABROUS 11 (.1) Potri.012G038500 [exp] 657 / 0 AT1G73360 920 / 0.0 ENHANCED DROUGHT TOLERANCE 1, homeodomain GLABROUS 11 (.1) Potri.012G139300 [exp] 654 / 0 AT4G00730 838 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Potri.015G141800 [exp] 652 / 0 AT4G00730 829 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006765 [exp] 1184 / 0 AT4G21750 1152 / 0.0 MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Lus10020059 [exp] 1145 / 0 AT4G21750 1130 / 0.0 MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Lus10007650 [exp] 1130 / 0 AT4G04890 1121 / 0.0 protodermal factor 2 (.1) Lus10039667 [exp] 1027 / 0 AT1G05230 1142 / 0.0 homeodomain GLABROUS 2 (.1.2.3.4) Lus10027175 [exp] 1026 / 0 AT1G05230 1138 / 0.0 homeodomain GLABROUS 2 (.1.2.3.4) Lus10018359 [exp] 813 / 0 AT4G04890 805 / 0.0 protodermal factor 2 (.1) Lus10031321 [exp] 684 / 0 AT1G73360 920 / 0.0 ENHANCED DROUGHT TOLERANCE 1, homeodomain GLABROUS 11 (.1) Lus10036567 [exp] 666 / 0 AT4G00730 979 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Lus10027437 [exp] 573 / 0 AT3G61150 715 / 0.0 HOMEODOMAIN-GLABRA2 1, homeodomain GLABROUS 1 (.1) Lus10005759 [exp] 565 / 0 AT3G61150 706 / 0.0 HOMEODOMAIN-GLABRA2 1, homeodomain GLABROUS 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00046 [poplar] [flax] Homeodomain Homeodomain CL0209 [poplar] [flax] Bet_v_1_like PF01852 [poplar] [flax] START START domain
Representative CDS sequence Show only first row Show all	>Potri.011G025000.4 pacid=42782360 polypeptide=Potri.011G025000.4.p locus=Potri.011G025000 ID=Potri.011G025000.4.v4.1 annot-version=v4.1 ATGTTCGATAGCCACCATATGCTTGATATGACTCCCAAAAGCTCTGAAAATGACTTGAGCAAGCTCAAAGATGATGACTATGAGACCAAATCCGGCACCG AAACTATGGAAGCTCCCTCCGGTGATGATCAGGATCCCAGCGGCCAACGCCCCAAAAAGAAGCGTTATCATCGCCATACGCAGCGTCAAATCCAAGAAAT GGAAGCTTTCTTCCAGGAATGCCCTCATCCGGACGACAAGCAGCGGAAGGAGCTCAGCCGCGAGCTAGGGCTGGATCCATTGCAAGTAAAATTTTGGTTC CAAAACAAGCGTACTCAAATGAAGGCGCAACATGAACGCAGTGAGAATTCAATTCTCAAGGCTGAGAATGAAAAGCTTCGTATGGAGAACAATAGGTACA AGGAAGCCCTAAGCAGTGCCTCATGCCCTAACTGTGGTGGTCCAGCTGCTCTTGGTGAGATGTCTTTTGATGAGCAGCATTTGAGGATTGAGAATGCTCG TCTTAGAGAAGAGATTGACAGGATATCTGGAATTGCTGCCAAGTATGTTGGCAAGCCTTTGTCTTCTCTTTCCAACCTTTCTCATCATTTACCATCCCGA TCTCTTGATCTCGGAGTTAGCAATTATGGGGCACATTCGGGCTTCGTAGGGGAGATGTTTGGAGCTACTGCTCTCCTTGGAGCAGTTACTGGACCTACTG AGGCAGATAAACCAATGATAGTTGAAGTCGCGGTTGCGGCAATGGAGGAACTAATGAGAATGGCTCAGGCTGGAGAACCCTTGTGGATTCAAGGAGAGAA CAATACCGAGGTTCTCAATGAAGAGGAATATTTGAGAACTTTCACTAGGGGAATTGGACCAAGACCTTTAGGAATGAGATCTGAAGCTTCAAGGGAATCC GCAGTTGTTATCATGAGTCATGTTAATCTTGTTGAAATTCTCATGGATGCGAATCAATGGTCAACTATTTTCTGTGGTATTGTATCAAGAGCAATGACCC TGGAAGTCCTATCAACAGGAGTGGCAGGGAACTATAATGGAGCATTGCAAGTGATGACAGCTGAGTTCCAGGTCCCTTCCCCACTTGTTCCTACTAGAGA AAATTACTTTGTGAGGTACTGTAAACAGCATACCGATGCGACTTGGGCAGTGGTAGACGTTTCTTTGGACAGTTTATGCCCTAGTCTGATGTCTAAATGT AGAAGAAGGTCATCAGGTTGCTTGATCCAAGAATTGCCAAATGGTTATTCCAATGTCGTTTGGGTTGAGCACACTGAAGTGGACGACAGGTCTGTTCACA ATATATACAGACCCCTGGTTAATTCTGGTCTTGCTTTTGGAGCAAAGCGTTGGGTGGGAACATTAGATCGACAATGCGAACGTCTTGCAAGTTCAATGGC CATTAACATTCCAACTGGAGATCTATGTGTGATAACAACCCCTGAAGGGAGGAAAAGTATTCTGAAGCTGGCTGAGAGAATGGTGATGAGCTTTTGCACT GGAGTTGGTGCTTCTACTGCACATACTTGGACAACATTGTCTGCAACTGGTTCTGATGATGTGAGAGTAATGACTCGAAAGAGTATGGATGATCCAGGCA GGCCTCCAGGTATTGTGCTCAGCGCAGCGACTTCCTTCTGGATTCCTGTTCCATCCAAGAAGGTGTTTGATTTCCTTAAGGATGAGAACCATCGAAGTGA GTGGGATATCCTTTCAAATGGTGGCCAGGTTCAAGAAATGGCTCATATTGCTAATGGACGTGATCCCGGGAACTGTGTCTCATTGCTCCGTGTCAATAGT ACAAATTCAAGCCAGAGCAACATGCTGATCTTACAAGAGAGCTGCACTGATTCTACAGGCTCATATGTGATTTATGCACCAGTGGACATTTCGGCCATGA ATATAGTCCTAAGTGGTGGAGACCCAGATTATGTTGCTCTGCTTCCATCAGGTTTTGCTATTCTCCCTGATGGACCAGGATATGGCCCTGCAGGAATTCT TGATGTCGGGTCTGGCGGCTCTCTGTTGACTGTTGCATTTCAGATATTAGTGGATTCAGTCCCATCAGTGAAACTTTCGCTTGGATCAGTAGCAACTGTA AACAGTCTAATTAAGTGCACAGTTGAAAGGATTAAGGCTGCAGTAATGTGTGACAATCCTTGA
AA sequence Show only first row Show all	>Potri.011G025000.4 pacid=42782360 polypeptide=Potri.011G025000.4.p locus=Potri.011G025000 ID=Potri.011G025000.4.v4.1 annot-version=v4.1 MFDSHHMLDMTPKSSENDLSKLKDDDYETKSGTETMEAPSGDDQDPSGQRPKKKRYHRHTQRQIQEMEAFFQECPHPDDKQRKELSRELGLDPLQVKFWF QNKRTQMKAQHERSENSILKAENEKLRMENNRYKEALSSASCPNCGGPAALGEMSFDEQHLRIENARLREEIDRISGIAAKYVGKPLSSLSNLSHHLPSR SLDLGVSNYGAHSGFVGEMFGATALLGAVTGPTEADKPMIVEVAVAAMEELMRMAQAGEPLWIQGENNTEVLNEEEYLRTFTRGIGPRPLGMRSEASRES AVVIMSHVNLVEILMDANQWSTIFCGIVSRAMTLEVLSTGVAGNYNGALQVMTAEFQVPSPLVPTRENYFVRYCKQHTDATWAVVDVSLDSLCPSLMSKC RRRSSGCLIQELPNGYSNVVWVEHTEVDDRSVHNIYRPLVNSGLAFGAKRWVGTLDRQCERLASSMAINIPTGDLCVITTPEGRKSILKLAERMVMSFCT GVGASTAHTWTTLSATGSDDVRVMTRKSMDDPGRPPGIVLSAATSFWIPVPSKKVFDFLKDENHRSEWDILSNGGQVQEMAHIANGRDPGNCVSLLRVNS TNSSQSNMLILQESCTDSTGSYVIYAPVDISAMNIVLSGGDPDYVALLPSGFAILPDGPGYGPAGILDVGSGGSLLTVAFQILVDSVPSVKLSLGSVATV NSLIKCTVERIKAAVMCDNP

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G21750	HD	ATML1	MERISTEM LAYER 1, Homeobox-leu...		Potri.011G025000 [exp]	0	1	Pt-ATML1.1
AT2G23060			Acyl-CoA N-acyltransferases (N...		Potri.010G144700 [exp]	2.00	0.9828
AT5G20635		AGG3	Arabidopsis G protein gamma su...		Potri.006G141100 [exp]	2.00	0.9702
AT4G00820		IQD17	IQ-domain 17 (.1)		Potri.015G005900 [exp]	3.16	0.9679
AT2G44480		BGLU17	beta glucosidase 17 (.1.2)		Potri.001G227400 [exp]	3.46	0.9785
AT3G11480		BSMT1, ATBSMT1	S-adenosyl-L-methionine-depend...		Potri.019G022002 [exp]	3.74	0.9506
AT1G14760		KNATM	KNOX Arabidopsis thaliana mein...		Potri.012G043400 [exp]	4.58	0.9414
AT3G13960	GRF	ATGRF5	growth-regulating factor 5 (.1...		Potri.001G169100 [exp]	5.00	0.9361
AT2G26490			Transducin/WD40 repeat-like su...		Potri.003G051100 [exp]	5.83	0.9478
AT1G48600		AtPMEAMT	phosphoethanolamine N-methyltr...		Potri.015G039000 [exp]	6.63	0.9398
AT2G44480		BGLU17	beta glucosidase 17 (.1.2)		Potri.001G227300 [exp]	6.92	0.9598

Compare expression of checked genes

Potri.011G025000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.