Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11580 638 / 0 ATPMEPCRA methylesterase PCR A (.1) AT5G53370 433 / 2e-146 ATPMEPCRF pectin methylesterase PCR fragment F (.1) AT3G14310 432 / 7e-146 ATPME3 pectin methylesterase 3 (.1) AT1G53830 425 / 4e-143 ATPME2 pectin methylesterase 2 (.1) AT1G11590 414 / 8e-140 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G49220 411 / 2e-137 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT2G45220 405 / 3e-136 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT2G43050 405 / 4e-136 ATPMEPCRD, PME16 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT4G03930 404 / 2e-135 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G60730 399 / 6e-134 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G135000 [exp] 636 / 0 AT1G11580 560 / 0.0 methylesterase PCR A (.1) Potri.003G072800 [exp] 466 / 5e-159 AT3G14310 795 / 0.0 pectin methylesterase 3 (.1) Potri.002G202500 [exp] 449 / 7e-153 AT4G02320 576 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.015G013700 [exp] 450 / 2e-152 AT3G49220 805 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.018G051400 [exp] 444 / 1e-150 AT3G14310 708 / 0.0 pectin methylesterase 3 (.1) Potri.001G162400 [exp] 444 / 2e-150 AT3G14310 792 / 0.0 pectin methylesterase 3 (.1) Potri.012G014500 [exp] 444 / 2e-150 AT3G49220 789 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.012G126800 [exp] 439 / 2e-149 AT2G45220 637 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.015G127700 [exp] 434 / 2e-147 AT2G45220 680 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013344 [exp] 444 / 6e-151 AT3G14310 698 / 0.0 pectin methylesterase 3 (.1) Lus10039314 [exp] 428 / 2e-144 AT3G14310 702 / 0.0 pectin methylesterase 3 (.1) Lus10006103 [exp] 422 / 2e-143 AT2G45220 592 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10027206 [exp] 422 / 1e-142 AT2G45220 551 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10038917 [exp] 422 / 3e-142 AT2G45220 630 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10008203 [exp] 415 / 1e-139 AT4G02320 497 / 2e-172 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10018103 [exp] 411 / 4e-137 AT3G49220 799 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10027202 [exp] 409 / 4e-137 AT2G45220 620 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10009110 [exp] 394 / 1e-131 AT1G23200 501 / 1e-173 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10003933 [exp] 391 / 7e-130 AT3G14310 733 / 0.0 pectin methylesterase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [poplar] [flax] Pec_lyase-like PF01095 [poplar] [flax] Pectinesterase Pectinesterase CL0268 [poplar] [flax] PF04043 [poplar] [flax] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Potri.011G025400.1 pacid=42781649 polypeptide=Potri.011G025400.1.p locus=Potri.011G025400 ID=Potri.011G025400.1.v4.1 annot-version=v4.1 ATGGCAACAATGAATACTCCTCTATTAGCCACCCCCAAAACCTCTCGTCGCAAAACTATATGTCTAGTTCTCTCCATGGTTGCAATCTTAAGCTCAACCA CACTAGTTACCATGCGCTATTACACAAAAACTGACCCCTCTTCCCCTCCTGGCCTATTGCAAAACTTATGTGACCATGCATATGACCAAGAATCATGCCT AGCCGTGGTCTCACAAATAGCTTCAAACACATCCACTAAAATGAGCCAAGTCGGTCTACTTCAGCTCTTGTTAGGAAAATCCACACCCCACATACAAAAT ACTATTGAAAAGGCCAAGGTTATTCACAGTCGGATCAATGATGCTAGAGAACAAGCGGCCCTAGGAGATTGTGTGGAGCTGATGGAGATCTCCAAGTACA GAATCAAGGACACAATAGTTGCTCTTGAAAGAGTTACATCCAAATCCCATGCAAATGCTCTTACGTGGCTTAGCAGTGTCCTCACCAACCATGATACATG CTTAGATGGGCTAAATGGTCCAGCCAGGTCCACAATGGAGCCAGACCTCAATGACCTGATATTGAGAGCGAGAACTTCTCTAGCCATACTAGCTGCAATT TCACCCTCGAAAGAAAATAATGACATCTTTTCATTGAAAGAAGATTTTCCATCATGGCTACCTAGTATGGATAGAAAGCTTCTAGTTGCTCTGCCAAAGG ACATCAACGCTGATGTTACAGTGGCTAAAGATGGGAGTGGTAAGTACAAGACTGTGAAAGAGGCTGTGGCATCAGCACCAGATAATGGCAAGACCAGGTA TGTTATTTATGTGAAGAAGGGGACATATAAGGAGAATGTTGAAGTGGGAAAGAAAAAGAAGAACGTGATGCTTGTTGGTGATGGCATGGATTCCACTATC ATTACTGGTAGTTTGAATGTTGTTGATGGGTCTACAACATTCAACTCTGCCACTGTAGCTGCTGTTGGTGATGGATTCATAGCCCAGGACATTTGGTTCC AAAACACCGCTGGCCCAGAGAAGCATCAAGCGGTGGCCCTCCGCGTCGGAGCTGATCAATCAGTGATTAACCGATGCCGCATTGATGCCTATCAAGACAC CCTCTATACCCACAGCCTCCGGCAATTCTACAGAGATAGCTATATTACTGGCACAGTGGACTTCATCTTCGGCAATGCTGCTGTGGTGCTCCAAAACTGC AAGCTTGTACCACGAAAGCCCATGAGTGGACAAAAGAACATGGTAACAGCCCAAGGAAGAACTGACCCAAACCAAAACACTGGGACATCAATCCAGAAAT GTGACATTATAGCAAGCTCTGATCTTACGCCTGTTAAGAGCTCATTCAAATCATTCTTGGGCCGTCCATGGAAGGAGTACTCAAGGACTGTTGTAATGCA GTCCAATATTGGTGACCTTATTGATCCAGCTGGGTGGTCAGCGTGGGATGGGGAGTTTGCCCTAAAGACTTTGTATTATGGTGAGTATTTGAACCAGGGA GCAGGTGCTGGTACTAGTAAAAGAGTGAATTGGGCAGGTTATCATGTCATTACTAGTGCTAATGAGGCCAAGAAATTCACGGTGGCTGAGTTGATACAAG GAGGGGTTTGGTTGAAGTCTACTGGAGTTTCTTATACAGAAGGGCTGTGA
AA sequence Show only first row Show all	>Potri.011G025400.1 pacid=42781649 polypeptide=Potri.011G025400.1.p locus=Potri.011G025400 ID=Potri.011G025400.1.v4.1 annot-version=v4.1 MATMNTPLLATPKTSRRKTICLVLSMVAILSSTTLVTMRYYTKTDPSSPPGLLQNLCDHAYDQESCLAVVSQIASNTSTKMSQVGLLQLLLGKSTPHIQN TIEKAKVIHSRINDAREQAALGDCVELMEISKYRIKDTIVALERVTSKSHANALTWLSSVLTNHDTCLDGLNGPARSTMEPDLNDLILRARTSLAILAAI SPSKENNDIFSLKEDFPSWLPSMDRKLLVALPKDINADVTVAKDGSGKYKTVKEAVASAPDNGKTRYVIYVKKGTYKENVEVGKKKKNVMLVGDGMDSTI ITGSLNVVDGSTTFNSATVAAVGDGFIAQDIWFQNTAGPEKHQAVALRVGADQSVINRCRIDAYQDTLYTHSLRQFYRDSYITGTVDFIFGNAAVVLQNC KLVPRKPMSGQKNMVTAQGRTDPNQNTGTSIQKCDIIASSDLTPVKSSFKSFLGRPWKEYSRTVVMQSNIGDLIDPAGWSAWDGEFALKTLYYGEYLNQG AGAGTSKRVNWAGYHVITSANEAKKFTVAELIQGGVWLKSTGVSYTEGL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G11580		ATPMEPCRA	methylesterase PCR A (.1)		Potri.011G025400 [exp]	0	1
AT2G15780			Cupredoxin superfamily protein...		Potri.009G106000 [exp]	1.73	0.9201
AT1G15060			Uncharacterised conserved prot...		Potri.010G119700 [exp]	4.89	0.8850
AT5G57685		LSB1, ATGDU3	LESS SUSCEPTIBLE TO BSCTV 1, A...		Potri.017G107200 [exp]	5.74	0.8364
AT1G73325			Kunitz family trypsin and prot...		Potri.019G124500 [exp]	6.00	0.9186
AT1G73325			Kunitz family trypsin and prot...		Potri.019G124432 [exp]	6.32	0.9095
AT3G57540			Remorin family protein (.1)		Potri.006G053200 [exp]	7.21	0.8676
AT1G61560		ATMLO6, MLO6	MILDEW RESISTANCE LOCUS O 6, S...		Potri.011G058900 [exp]	7.48	0.8809
AT1G73325			Kunitz family trypsin and prot...		Potri.019G122100 [exp]	9.64	0.9096
AT1G61740			Sulfite exporter TauE/SafE fam...		Potri.011G030900 [exp]	10.24	0.8320
AT5G51760		AHG1	ABA-hypersensitive germination...		Potri.015G133900 [exp]	10.39	0.8795

Compare expression of checked genes

Potri.011G025400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.