Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02280 144 / 2e-41 Flavodoxin family protein (.1) AT3G24710 81 / 5e-21 unknown protein AT4G24520 58 / 1e-10 AR1, ATR1 ARABIDOPSIS CYTOCHROME REDUCTASE, P450 reductase 1 (.1.2) AT4G30210 50 / 4e-08 AR2, ATR2 P450 reductase 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G101100 [exp] 196 / 3e-60 AT3G02280 811 / 0.0 Flavodoxin family protein (.1) Potri.002G106566 [exp] 56 / 4e-10 AT4G24520 459 / 2e-159 ARABIDOPSIS CYTOCHROME REDUCTASE, P450 reductase 1 (.1.2) Potri.018G092100 [exp] 56 / 4e-10 AT4G30210 984 / 0.0 P450 reductase 2 (.1.2) Potri.005G153800 [exp] 55 / 1e-09 AT4G24520 974 / 0.0 ARABIDOPSIS CYTOCHROME REDUCTASE, P450 reductase 1 (.1.2) Potri.006G167200 [exp] 52 / 1e-08 AT4G30210 965 / 0.0 P450 reductase 2 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017589 [exp] 137 / 2e-38 AT3G02280 810 / 0.0 Flavodoxin family protein (.1) Lus10033550 [exp] 110 / 5e-32 AT3G02280 121 / 7e-33 Flavodoxin family protein (.1) Lus10015525 [exp] 57 / 4e-10 AT4G30210 1009 / 0.0 P450 reductase 2 (.1.2) Lus10025485 [exp] 56 / 6e-10 AT4G30210 681 / 0.0 P450 reductase 2 (.1.2) Lus10019996 [exp] 56 / 6e-10 AT4G30210 1013 / 0.0 P450 reductase 2 (.1.2) Lus10006972 [exp] 51 / 3e-08 AT4G30210 983 / 0.0 P450 reductase 2 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.011G027100.2 pacid=42780286 polypeptide=Potri.011G027100.2.p locus=Potri.011G027100 ID=Potri.011G027100.2.v4.1 annot-version=v4.1 ATGTGTCTGGCTCTGCTGCTGCTCCTATTTGGATGTTTTTTTGGTTGTCGAAATGAGGAGAATGACTTTTTGTACAGAGATTTTTGGTTGTCTCATGCAC AGAACGGTGGACCACTTTGCATAGCAAGGGGTGGAAGGTTTTATGTAGCCTTCTCAAGAGATCAACTACAAAACGTTTATGTGCAGCAGAAGATGAGGAA ACAGAGCCAGACGGTTTGGGATTTTCTATTGAAAGGGGCATGCATATCTGTTGCAAGTTCGGCAACCAAAATGCCCTCAGATGTAATGTCAGCCATGGTG GAAATTATATCCGAAGAGGCTGGATTTTCAAGGGAAACTGCTGTTTTGCAGCTTAGGAGATTGGAAAAGGTTGGTAGATACCATGTTGAAGCATGGTCCT GA
AA sequence Show only first row Show all	>Potri.011G027100.2 pacid=42780286 polypeptide=Potri.011G027100.2.p locus=Potri.011G027100 ID=Potri.011G027100.2.v4.1 annot-version=v4.1 MCLALLLLLFGCFFGCRNEENDFLYRDFWLSHAQNGGPLCIARGGRFYVAFSRDQLQNVYVQQKMRKQSQTVWDFLLKGACISVASSATKMPSDVMSAMV EIISEEAGFSRETAVLQLRRLEKVGRYHVEAWS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G02280			Flavodoxin family protein (.1)		Potri.011G027100 [exp]	0	1
					Potri.009G014750 [exp]	3.74	0.8545
AT1G76750			Protein of unknown function (D...		Potri.001G306700 [exp]	4.47	0.7691
AT3G30530	bZIP	ATBZIP42	basic leucine-zipper 42 (.1)		Potri.004G111100 [exp]	7.74	0.7916
					Potri.002G047750 [exp]	12.12	0.8038
					Potri.018G049733 [exp]	13.19	0.7300
AT4G20280		TAF11	TBP-associated factor 11 (.1)		Potri.003G157450 [exp]	20.78	0.6856
					Potri.004G103350 [exp]	20.83	0.7164
AT1G68500			unknown protein		Potri.010G124700 [exp]	21.16	0.7735
AT3G07870			F-box and associated interacti...		Potri.010G207401 [exp]	22.44	0.6345
					Potri.017G037400 [exp]	24.33	0.7073

Compare expression of checked genes

Potri.011G027100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.