Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23180 553 / 0 RLK4, CRK10 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) AT4G05200 525 / 1e-179 CRK25 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) AT3G45860 524 / 2e-179 CRK4 cysteine-rich RLK (RECEPTOR-like protein kinase) 4 (.1) AT4G23140 517 / 1e-176 RLK5, CRK6 cysteine-rich RLK (RECEPTOR-like protein kinase) 6 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 6 (.2) AT4G23160 530 / 8e-175 CRK8 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (.1) AT4G23130 508 / 4e-173 RLK6, CRK5 RECEPTOR-LIKE PROTEIN KINASE 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.2) AT4G23280 505 / 3e-172 CRK20 cysteine-rich RLK (RECEPTOR-like protein kinase) 20 (.1) AT4G23270 503 / 2e-171 CRK19 cysteine-rich RLK (RECEPTOR-like protein kinase) 19 (.1) AT4G23230 476 / 4e-163 CRK15 cysteine-rich RLK (RECEPTOR-like protein kinase) 15 (.1) AT4G21410 444 / 5e-148 CRK29 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G023550 [exp] 763 / 0 AT4G05200 541 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Potri.011G027700 [exp] 650 / 0 AT4G05200 373 / 3e-122 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Potri.011G028400 [exp] 587 / 0 AT4G05200 709 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Potri.004G024900 [exp] 576 / 0 AT4G23180 506 / 1e-171 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G025900 [exp] 572 / 0 AT4G23130 573 / 0.0 RECEPTOR-LIKE PROTEIN KINASE 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.2) Potri.004G024800 [exp] 571 / 0 AT4G23180 663 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G025800 [exp] 570 / 0 AT4G23180 648 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G024500 [exp] 569 / 0 AT4G23180 675 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G024404 [exp] 560 / 0 AT4G23180 671 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018379 [exp] 473 / 3e-159 AT4G23180 566 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10007632 [exp] 468 / 2e-157 AT4G05200 624 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10018382 [exp] 459 / 5e-154 AT4G21410 605 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Lus10007633 [exp] 440 / 1e-146 AT4G05200 566 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10026629 [exp] 440 / 3e-146 AT4G23180 540 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10038552 [exp] 441 / 9e-145 AT4G27290 879 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10018408 [exp] 436 / 6e-142 AT4G21390 936 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10014812 [exp] 427 / 4e-139 AT4G27290 749 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10033752 [exp] 409 / 6e-139 AT4G03230 497 / 6e-169 S-locus lectin protein kinase family protein (.1) Lus10007600 [exp] 439 / 9e-137 AT1G11300 930 / 0.0 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01657 [poplar] [flax] Stress-antifung Salt stress response/antifungal CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0016 [poplar] [flax] PF11883 [poplar] [flax] DUF3403 Domain of unknown function (DUF3403)
Representative CDS sequence Show only first row Show all	>Potri.011G027501.1 pacid=42781348 polypeptide=Potri.011G027501.1.p locus=Potri.011G027501 ID=Potri.011G027501.1.v4.1 annot-version=v4.1 ATGAAGATTGAAAGGGTTGAAGAGGAGGGGGCGGCTGTCTATGGCCTCTTTCTTTGCCGTGGCGATGTCAGTGTCAAAGTTTGCCTAGAATGTGTGAACC TTCTAAGAAACGAAGTAGTCCAAAGATGTCCAATCCAGAAGGAGGCTATCATATATTATGATCTGTGCTTCCTGCGCTACTCAAACAGTAACATCTTCTC CAGGTTCAGCCAAACGTCTTGGGTTGTCTTGTTGAATACACAAAATATAGCTGTTGATGTACAATTTAACAAGCGAGTGAATGATTCTATATCTGATGCT GCTAAAGAAGCTGCAAGAGCGCCATCAGGTGAAAAAAAGTTCGCAGCCAAAAAAGTGATTTATACGTGGGAAGAATCTCTATACGTTCTTGTGCAGTGCA CACCGGATCTATCTAAATATGATTGTAATCGGTGTCTTAACCTAACTATCTCCTACATATCAGTTTGGAGTAAAAATGCGCAAGGAGGAAGAGTCTTGTT TCCAAGCTGTAATTCTCGATTTGAAATTTATTCTTTTTACAACGAAACTGCCGTTGTTCCCCTCCCTCCACCACCACTGTCACCACCACCACTGTCCCCG CCAGTTGTTCCCCTCCCTCCATCTCCAGGCTCAATAGCAGATGGAAAAGGAGATGGAAGCAAATCGATGCGGATTAAAGTCGGTGCAGGCCTATCCGCAG TTATTGTTGTGCTATTTTTCAGTGCTTGCACTTACACCATGAGGAGAAGGACGAATCTGAGAACAGAGGAAATAGGAAATATCCAAGAGGAACAATTACT CGACTTGGCAGGGCGAGCAACTGTTGGGGACGACTATCCAGACAAAGATATTCAAGGAGAGGTGACATCCCAGGACCTCCCTTTGATCCGGCTAGATGTT ATAAATGAAGCTACAAAGCAATTTTCTGATGAAAACAAACTTGGTCAAGGAGGGTTTGGCCCAGTATACAGGGGTACGTTAGAGGATGGCAAAGAAGTTG CAGTTAAGAGGCTCTCAAGAACTTCTGGTCAAGGACAAAGAGAATTCCTGAACGAAGTCGTTTTAATCGCCAGATTACAACACAGAAATCTTGTCAGACT CCTGGGATGCTGTCTGGAAAAAAATGAAAAGTTACTTATCTATGAGTATATGCCCAACAAAAGCCTTGATGTCATTCTTTTTGGTTCCAGCAATGGAGTC CTGCTTGACTGGCAAAGACGCTTGAGCATAATCAATGGAATTGCACGGGGGCTCTTGTATCTTCATGAAGATTCTCGTCTTAGAATTATTCACAGGGATC TCAAAACAAGCAACATTTTGCTTGATTATGAGATGAATCCAAAGATATCAGACTTTGGAATGGCTCGGATTTTCGGTGGAAATCAAAGCGAGGCTAACAC GAATAGAATTGTCGGAACTTATGGATACATGGCCCCAGAGTATGCTATGGCGGGTCTTTTTTCTGTAAAATCAGATGTTTTCAGTTTCGGAGTGTTGCTG TTAGAGATAATCAGTGGAAAAAGAAACGTTGGCTTTCATCTCTTAGAAGAAGGCGAAAGCCTTCTCACTTTTGCATGGAAACTGTGGTCTGATGGTCAAG GACTGGAATTGATGGACCCTATGCTAGAGAAATCAAGCGTGGCAACTGAGGTGCTGAGATGCATCCACATTGGGCTGCTCTGCGTGCAAGAGGATCCAGC AGATAGACCCACAATGTCATCTGTGCTTCATGTGTTGGCAAGTGATACCATAACACTCCCTATCCCTAAACAGCCTGCATTTTCTATTGGCCGATTTGTT GCCATGGAAGGTCAATCCTCAAATCAGAAAGTTTGTTCTAGCAATGAATTAACCTTTTCCGTTTCATCACCACGATGA
AA sequence Show only first row Show all	>Potri.011G027501.1 pacid=42781348 polypeptide=Potri.011G027501.1.p locus=Potri.011G027501 ID=Potri.011G027501.1.v4.1 annot-version=v4.1 MKIERVEEEGAAVYGLFLCRGDVSVKVCLECVNLLRNEVVQRCPIQKEAIIYYDLCFLRYSNSNIFSRFSQTSWVVLLNTQNIAVDVQFNKRVNDSISDA AKEAARAPSGEKKFAAKKVIYTWEESLYVLVQCTPDLSKYDCNRCLNLTISYISVWSKNAQGGRVLFPSCNSRFEIYSFYNETAVVPLPPPPLSPPPLSP PVVPLPPSPGSIADGKGDGSKSMRIKVGAGLSAVIVVLFFSACTYTMRRRTNLRTEEIGNIQEEQLLDLAGRATVGDDYPDKDIQGEVTSQDLPLIRLDV INEATKQFSDENKLGQGGFGPVYRGTLEDGKEVAVKRLSRTSGQGQREFLNEVVLIARLQHRNLVRLLGCCLEKNEKLLIYEYMPNKSLDVILFGSSNGV LLDWQRRLSIINGIARGLLYLHEDSRLRIIHRDLKTSNILLDYEMNPKISDFGMARIFGGNQSEANTNRIVGTYGYMAPEYAMAGLFSVKSDVFSFGVLL LEIISGKRNVGFHLLEEGESLLTFAWKLWSDGQGLELMDPMLEKSSVATEVLRCIHIGLLCVQEDPADRPTMSSVLHVLASDTITLPIPKQPAFSIGRFV AMEGQSSNQKVCSSNELTFSVSSPR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Potri.011G027501 [exp]	0	1
					Potri.019G017850 [exp]	3.46	0.9418
AT5G38260			Protein kinase superfamily pro...		Potri.017G117010 [exp]	6.92	0.9386
AT3G09830			Protein kinase superfamily pro...		Potri.008G036800 [exp]	7.74	0.9020
AT1G25390			Protein kinase superfamily pro...		Potri.010G121100 [exp]	9.79	0.9403
AT1G68940			Armadillo/beta-catenin-like re...		Potri.001G069501 [exp]	10.00	0.9210
AT5G25930			Protein kinase family protein ...		Potri.018G088200 [exp]	10.67	0.9125
AT4G12735			unknown protein		Potri.001G226700 [exp]	14.69	0.9210
AT1G77810			Galactosyltransferase family p...		Potri.002G089800 [exp]	16.12	0.9266
AT1G68320	MYB	BW62C, BW62B, A...	myb domain protein 62 (.1)		Potri.012G055600 [exp]	18.22	0.8635
AT4G12735			unknown protein		Potri.001G226400 [exp]	20.07	0.9167

Compare expression of checked genes

Potri.011G027501 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.