Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G05200 373 / 3e-122 CRK25 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) AT4G23180 354 / 3e-115 RLK4, CRK10 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) AT4G23280 338 / 5e-109 CRK20 cysteine-rich RLK (RECEPTOR-like protein kinase) 20 (.1) AT4G23270 324 / 6e-104 CRK19 cysteine-rich RLK (RECEPTOR-like protein kinase) 19 (.1) AT4G38830 319 / 1e-101 CRK26 cysteine-rich RLK (RECEPTOR-like protein kinase) 26 (.1) AT3G45860 314 / 1e-99 CRK4 cysteine-rich RLK (RECEPTOR-like protein kinase) 4 (.1) AT4G23160 323 / 7e-99 CRK8 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (.1) AT4G23130 308 / 1e-97 RLK6, CRK5 RECEPTOR-LIKE PROTEIN KINASE 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.2) AT4G23200 301 / 6e-95 CRK12 cysteine-rich RLK (RECEPTOR-like protein kinase) 12 (.1) AT4G23190 297 / 2e-93 AT-RLK3, CRK11 RECEPTOR LIKE PROTEIN KINASE 3, cysteine-rich RLK (RECEPTOR-like protein kinase) 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G027501 [exp] 642 / 0 AT4G23180 553 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G023550 [exp] 535 / 0 AT4G05200 541 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Potri.011G028400 [exp] 432 / 4e-145 AT4G05200 709 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Potri.004G024800 [exp] 408 / 6e-136 AT4G23180 663 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G025800 [exp] 396 / 4e-131 AT4G23180 648 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G024404 [exp] 392 / 1e-129 AT4G23180 671 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G024500 [exp] 376 / 1e-123 AT4G23180 675 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G025650 [exp] 374 / 3e-123 AT4G23180 646 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G025200 [exp] 368 / 1e-120 AT4G23180 665 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018377 [exp] 340 / 8e-109 AT4G05200 489 / 4e-164 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10007632 [exp] 317 / 2e-100 AT4G05200 624 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10018382 [exp] 310 / 5e-98 AT4G21410 605 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Lus10018379 [exp] 309 / 1e-97 AT4G23180 566 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10007634 [exp] 287 / 1e-89 AT4G23160 417 / 1e-137 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (.1) Lus10007633 [exp] 279 / 3e-86 AT4G05200 566 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10015091 [exp] 270 / 5e-79 AT5G54650 556 / 1e-178 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Lus10031582 [exp] 258 / 2e-78 AT4G05200 436 / 6e-145 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10038552 [exp] 261 / 6e-78 AT4G27290 879 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10018408 [exp] 258 / 1e-76 AT4G21390 936 / 0.0 S-locus lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PF01657 [poplar] [flax] Stress-antifung Salt stress response/antifungal
Representative CDS sequence Show only first row Show all	>Potri.011G027700.2 pacid=42781059 polypeptide=Potri.011G027700.2.p locus=Potri.011G027700 ID=Potri.011G027700.2.v4.1 annot-version=v4.1 ATGTTGGCTCTGAAATTCTCCATATTCCTGCTTTCCTTTGCAGCCCTGATGACCATTAACATCACGGAAGCACAGGAGATTAACTACCGTTATCATTTCT GCCAAAACACAACCACTTTCGTAAGAAACAGTACGTATCAGGCCAATTTAAAAATCCTTCTCTCTTCACTTGCCTTCAATGCAACCCGCAATGACATTAA CGGATTCTACAACGCCTCTGCAGGGCAAGATATCGATGAGGTCTATGGCCTTTTCCTCTGCCGCGGCGATGTTAGTGTCGAAGTTTGCCTAAAATGTGTG AAATTGGCCACGAACTATGTAGTCGAATTCTGTCCAATCGAGAAGGAGCTGGCTATCGTATGGTATGATGAGTGCTTCCTGCTCTACTCAAACAGTAACA ACTTCTCCAGCTTGAACCAAAGGCCTTTGGTTTCCATGCCGAATGTAGAAAATATAATTGTTGATGTAGAATTGAACCAGCTTCTGGTGAAAACTATATC TGATGCTGCTAAAGAAGCTGCAAGTGCGCCTTTAGGTGTAAAATATTTTGCAGCCAAAAAAGTGCTTTATACGTCGCATGAGTTTCTATACGTTCTTGTG CAGTGCACACCGGTTCTATCTACATCTGATTGTAATCGTTGTCTTGAACAAGCTATCCCTCAAGTACAAATTTGCTGTAATAATACGCGAGGAGGAAGAG TCCTAAATCCAAGCTGCTCAATAGCAGATGGAAAAGGAGATGGAAGCAAATCGATGTGGATTAAAGTCGGCGCAGGCCTATCCGCAGTTATTGCTGTGCT ATTTTTCAGTGCTTGCACTTACACCATGAGGAGAAGGACGAATCTGAGAACAGAGGAAATAGGAAATATCCGAGAGGATCAATTACTCGACTGGGCAGGA CGAGCAACTGTTGGGGACGACTATTCAGACAAAGATATTCAAGGAGAGGTGACATCCCAGGACCTCCCTTTGATCCGGCTAGATGTTATAAATGAAGCTA CAAAGCAATTTTCTGATGAAAACAAACTTGGTCAAGGAGGGTTTGGCCCAGTATACAGGGGTACGTTAGAGGATGGCAAAGAAGTTGCAGTTAAGAGGCT CTCAAGAACTTCTGGTCAAGGACAAAGAGAATTCCTGAACGAAGTCGTTTTAATCGCCAGATTACAACACAGAAATCTTGTCAGACTCCTGGGATGCTGT CTGGAAAAAAATGAAAAGTTACTTATCTATGAGTATATGCCCAACAATATGAGTATATGCCCAACAAAAGCCTTGATAAATGGAGTCCTGCTTGACTGGC AAAGACGCTTGAGCATTATCAATGGAATTGCACGTGGGCTCTTGTATCTTCATGAAGATTCTCGTCTTAGAATTATTCACAGGGACCTCAAAACAAGCAA CATCTTGCTTGATTATGAGATGAATCCAAAGATATCAGACTTTGGAATGGCTAGGATTTTCGGTGGAAATCCAAGCGAGGCTAACACGAATAGAATTGTC GGAACTTAG
AA sequence Show only first row Show all	>Potri.011G027700.2 pacid=42781059 polypeptide=Potri.011G027700.2.p locus=Potri.011G027700 ID=Potri.011G027700.2.v4.1 annot-version=v4.1 MLALKFSIFLLSFAALMTINITEAQEINYRYHFCQNTTTFVRNSTYQANLKILLSSLAFNATRNDINGFYNASAGQDIDEVYGLFLCRGDVSVEVCLKCV KLATNYVVEFCPIEKELAIVWYDECFLLYSNSNNFSSLNQRPLVSMPNVENIIVDVELNQLLVKTISDAAKEAASAPLGVKYFAAKKVLYTSHEFLYVLV QCTPVLSTSDCNRCLEQAIPQVQICCNNTRGGRVLNPSCSIADGKGDGSKSMWIKVGAGLSAVIAVLFFSACTYTMRRRTNLRTEEIGNIREDQLLDWAG RATVGDDYSDKDIQGEVTSQDLPLIRLDVINEATKQFSDENKLGQGGFGPVYRGTLEDGKEVAVKRLSRTSGQGQREFLNEVVLIARLQHRNLVRLLGCC LEKNEKLLIYEYMPNNMSICPTKALINGVLLDWQRRLSIINGIARGLLYLHEDSRLRIIHRDLKTSNILLDYEMNPKISDFGMARIFGGNPSEANTNRIV GT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G05200		CRK25	cysteine-rich RLK (RECEPTOR-li...		Potri.011G027700 [exp]	0	1
AT1G75800			Pathogenesis-related thaumatin...		Potri.004G014574 [exp]	5.38	0.8017
AT5G38280		PR5K	PR5-like receptor kinase (.1)		Potri.004G014700 [exp]	6.32	0.7430
AT1G74190		AtRLP15	receptor like protein 15 (.1)		Potri.006G061000 [exp]	6.92	0.7696
AT5G38280		PR5K	PR5-like receptor kinase (.1)		Potri.004G014512 [exp]	7.93	0.7298
AT5G16820	HSF	ATHSF3, ATHSFA1...	ARABIDOPSIS THALIANA CLASS A H...		Potri.011G051600 [exp]	10.00	0.7205
AT1G68320	MYB	BW62C, BW62B, A...	myb domain protein 62 (.1)		Potri.012G055600 [exp]	14.96	0.7873
AT3G47570			Leucine-rich repeat protein ki...		Potri.003G150100 [exp]	16.97	0.7095
AT5G57035			U-box domain-containing protei...		Potri.006G147000 [exp]	20.17	0.7191
					Potri.008G045532 [exp]	24.49	0.6878
AT2G25470		AtRLP21	receptor like protein 21 (.1)		Potri.006G061201 [exp]	28.56	0.7171

Compare expression of checked genes

Potri.011G027700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.