Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23180 516 / 7e-176 RLK4, CRK10 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) AT4G05200 502 / 2e-170 CRK25 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) AT4G23280 496 / 3e-168 CRK20 cysteine-rich RLK (RECEPTOR-like protein kinase) 20 (.1) AT4G11530 489 / 3e-165 CRK34 cysteine-rich RLK (RECEPTOR-like protein kinase) 34 (.1) AT4G23220 489 / 1e-164 CRK14 cysteine-rich RLK (RECEPTOR-like protein kinase) 14 (.1) AT4G23140 476 / 4e-160 RLK5, CRK6 cysteine-rich RLK (RECEPTOR-like protein kinase) 6 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 6 (.2) AT4G23160 491 / 2e-159 CRK8 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (.1) AT4G23150 471 / 2e-158 CRK7 cysteine-rich RLK (RECEPTOR-like protein kinase) 7 (.1) AT4G23260 470 / 3e-158 CRK18 cysteine-rich RLK (RECEPTOR-like protein kinase) 18 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 18 (.2) AT4G23270 468 / 2e-157 CRK19 cysteine-rich RLK (RECEPTOR-like protein kinase) 19 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G027900 [exp] 1086 / 0 AT4G23180 542 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.011G027600 [exp] 1056 / 0 AT4G23280 461 / 3e-156 cysteine-rich RLK (RECEPTOR-like protein kinase) 20 (.1) Potri.004G024228 [exp] 803 / 0 AT4G23180 551 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G023788 [exp] 798 / 0 AT4G23180 559 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G024052 [exp] 788 / 0 AT4G23180 545 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G024101 [exp] 788 / 0 AT4G23180 531 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.011G028100 [exp] 755 / 0 AT4G05200 519 / 8e-177 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Potri.004G024000 [exp] 607 / 0 AT4G23180 489 / 4e-165 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G023700 [exp] 595 / 0 AT4G05200 474 / 3e-159 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007632 [exp] 501 / 1e-169 AT4G05200 624 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10018382 [exp] 480 / 8e-162 AT4G21410 605 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Lus10018379 [exp] 459 / 2e-153 AT4G23180 566 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10031579 [exp] 445 / 3e-148 AT4G23160 477 / 8e-154 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (.1) Lus10007633 [exp] 442 / 4e-147 AT4G05200 566 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10015091 [exp] 449 / 5e-142 AT5G54650 556 / 1e-178 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Lus10027146 [exp] 428 / 1e-141 AT4G23180 451 / 1e-150 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10015094 [exp] 410 / 2e-134 AT4G23160 432 / 7e-143 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (.1) Lus10031578 [exp] 402 / 2e-132 AT4G23180 422 / 5e-134 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10031582 [exp] 403 / 3e-132 AT4G05200 436 / 6e-145 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01657 [poplar] [flax] Stress-antifung Salt stress response/antifungal CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.011G027800.1 pacid=42782406 polypeptide=Potri.011G027800.1.p locus=Potri.011G027800 ID=Potri.011G027800.1.v4.1 annot-version=v4.1 ATGGGTCATAATTTTCTCAGTGATGCGAACACCATTCAATTGCTTTTGTTGTTGTACTTTTCCATTGCCACCCTTTCGCAGCATAGCAGCAATTTTCTCA CTCATCCACCCTACAAGTTTTGCTCAAACACATCTCTTTACGAAGCTAATAGTCCATTTCAAAACAATCTCCAGACCCTCATGTCTTATCTTGCCTCAAA TGCTTCTGTGTCCAATCAATATCATGCCTATGCTGGAAATGACCCTGATATAGTCTATGCTCAATATATGTGCTACAACTACATCGAAAACTGCAGTGCC TGCATATATGCAGCATCACAAGATATCATGCAACTCTGTCCAAACAATAGAAATGCAACTGTATGGGAAGAGCTGTGCCAGTTGCGCTTCTCGAATAAAA ATTTCATAGGCCAGCTTGATATCTCAGGAAACATTCTCTTAGCTAATAAAGAGACGATTGAAAATTCAGGACAGTACATATCAGTAGTGAACGAAAAATT TAGTAATCTTACCAAGAAGGCTGCTTTTGACCCCACGCAGAATATGTATGCTACAGGAAAATTAGCCTTATCGGATATAGACACCCTTTATACTCTGGGG CAGTGCACTACAGATTTGTCATCTCACGATTGTAATACATGCCTTCAGGTTGCCATACAAAATATTTCAAGTTGCTGCTATATCGGTCGAGGGCAACGGC TTCTTAGTCAGAGTTGCTATTTTAGGTTTGAGTTATACCCATTCTATGAAGGCACAGCTGATTCGGGGGAGACATTGACGATTTTGAAGATTGTCCTTGG AACTTGTATACCAACAGTTGTTCTTGCATTTCTCACTGCATCGTGTATCATCTACTTTCGGCGAATAAGAAGAAAAGAAACAGATGAGGAAAAAAGTCAC CTTGCTTTCTTACAGGAACTGAGAAAATCTAGCGGATCGACATTCGCAGAAGGTAATAAGGTGAGTTCTGAGGAATTACCTTGGATGATGGACCTGAGTG TTATAAGAGCTGCGACAGATAACTTCTCTGTTTCAAACAAGCTTGGACAGGGTGGATTTGGCTCTGTTTACAAGGGGATACTAAGCGATGGAAGCGAAGT TGCAGTGAAGAGACTATCAAGAAGTTCGGAGCAGGGCGTAAAAGAATTCAAAACTGAAGTTCTATTAATAATGAAACTTCAGCACAAAAATCTTGTCAGG CTGCTTGGTTTTTGTGTTGAAGGAGAGGAAAAGCTCCTCGTCTATGAATTCATGCCTAACAGCAGCCTTGATGTTTTTCTTTTTGATCCTACGAAACGAG CAGAACTTGATTGGAGCAGTAGAATTGATATTATAAATGGAATTGCAAAGGGAATGCTTTATCTTCACGAGGATTCTAGGCTTAGAATCATTCATCGAGA CCTAAAAGCTTCTAATGTATTGTTAGACAATGAGATGAATCCGAAGATTTCTGACTTTGGAATGGCAAGGATTTTTTCAAGTAATGAAGACGAAGCCAAT ACTGCTCGAATAGTAGGAACATATGGATACATGGCACCAGAATATGCGATGGAGGGATTATATTCAACCAAATCTGATGTTTTTAGTTTTGGAGTTCTCT TGCTTGAGATCATAAGTGGGAGAAAGAAAGCTGGATACCACCAATCAAAATGTGCTCCTAGCCTCCTGGCATACCAGGCTTGGCAATTATGGAACGAAGG AAATAAAACAGAGTTGATTGATCCAATGCTGTCTGATTCATGCAATGCAGACGAATTCTCACGTTACATGCACATTGGTTTATTATGTGTTCAAGAAGAT GCTAGTGACAGACCTACCATGTCATCTGTTGTCTTAATGCTGCAAAGCCAAAATTCATTTCTTCCCCAACCTGAGCGGCCGGCTTTTGTGGGAAGATTCA TGGACAACCTAGAGGCAGCTGCTAGCAATTTCTCTGTCAATGAAATGACACTTTCTGATGTTGGTCCACGCTGA
AA sequence Show only first row Show all	>Potri.011G027800.1 pacid=42782406 polypeptide=Potri.011G027800.1.p locus=Potri.011G027800 ID=Potri.011G027800.1.v4.1 annot-version=v4.1 MGHNFLSDANTIQLLLLLYFSIATLSQHSSNFLTHPPYKFCSNTSLYEANSPFQNNLQTLMSYLASNASVSNQYHAYAGNDPDIVYAQYMCYNYIENCSA CIYAASQDIMQLCPNNRNATVWEELCQLRFSNKNFIGQLDISGNILLANKETIENSGQYISVVNEKFSNLTKKAAFDPTQNMYATGKLALSDIDTLYTLG QCTTDLSSHDCNTCLQVAIQNISSCCYIGRGQRLLSQSCYFRFELYPFYEGTADSGETLTILKIVLGTCIPTVVLAFLTASCIIYFRRIRRKETDEEKSH LAFLQELRKSSGSTFAEGNKVSSEELPWMMDLSVIRAATDNFSVSNKLGQGGFGSVYKGILSDGSEVAVKRLSRSSEQGVKEFKTEVLLIMKLQHKNLVR LLGFCVEGEEKLLVYEFMPNSSLDVFLFDPTKRAELDWSSRIDIINGIAKGMLYLHEDSRLRIIHRDLKASNVLLDNEMNPKISDFGMARIFSSNEDEAN TARIVGTYGYMAPEYAMEGLYSTKSDVFSFGVLLLEIISGRKKAGYHQSKCAPSLLAYQAWQLWNEGNKTELIDPMLSDSCNADEFSRYMHIGLLCVQED ASDRPTMSSVVLMLQSQNSFLPQPERPAFVGRFMDNLEAAASNFSVNEMTLSDVGPR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Potri.011G027800 [exp]	0	1
AT4G23280		CRK20	cysteine-rich RLK (RECEPTOR-li...		Potri.011G027600 [exp]	2.44	0.9842
AT1G15100		RHA2A	RING-H2 finger A2A (.1)		Potri.007G086200 [exp]	6.48	0.9733
AT5G06720		ATPA2	peroxidase 2 (.1)		Potri.003G215001 [exp]	7.34	0.9424
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Potri.006G247800 [exp]	7.93	0.9415
AT5G37860			Heavy metal transport/detoxifi...		Potri.006G079400 [exp]	8.48	0.9335
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Potri.011G027900 [exp]	8.66	0.9481
AT3G21410			F-box and associated interacti...		Potri.005G114900 [exp]	11.48	0.9131
AT5G35405			Protein of unknown function (D...		Potri.002G229600 [exp]	14.49	0.9261
AT3G25830		ATTPS-CIN	"terpene synthase-like sequenc...		Potri.001G308300 [exp]	15.00	0.9079
AT5G35405			Protein of unknown function (D...		Potri.002G229650 [exp]	15.19	0.9261

Compare expression of checked genes

Potri.011G027800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.