Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23180 543 / 0 RLK4, CRK10 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) AT4G05200 498 / 1e-169 CRK25 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) AT4G23280 497 / 2e-169 CRK20 cysteine-rich RLK (RECEPTOR-like protein kinase) 20 (.1) AT4G23270 487 / 2e-165 CRK19 cysteine-rich RLK (RECEPTOR-like protein kinase) 19 (.1) AT4G23260 483 / 5e-164 CRK18 cysteine-rich RLK (RECEPTOR-like protein kinase) 18 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 18 (.2) AT4G23160 500 / 1e-163 CRK8 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (.1) AT4G23150 483 / 1e-163 CRK7 cysteine-rich RLK (RECEPTOR-like protein kinase) 7 (.1) AT4G23220 473 / 4e-159 CRK14 cysteine-rich RLK (RECEPTOR-like protein kinase) 14 (.1) AT4G23200 469 / 1e-158 CRK12 cysteine-rich RLK (RECEPTOR-like protein kinase) 12 (.1) AT3G45860 464 / 4e-156 CRK4 cysteine-rich RLK (RECEPTOR-like protein kinase) 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G027800 [exp] 1086 / 0 AT4G23180 516 / 9e-176 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.011G027600 [exp] 1019 / 0 AT4G23280 461 / 3e-156 cysteine-rich RLK (RECEPTOR-like protein kinase) 20 (.1) Potri.004G024228 [exp] 818 / 0 AT4G23180 551 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G023788 [exp] 817 / 0 AT4G23180 559 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G024052 [exp] 799 / 0 AT4G23180 545 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G024101 [exp] 798 / 0 AT4G23180 531 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G024000 [exp] 577 / 0 AT4G23180 489 / 4e-165 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G023700 [exp] 576 / 0 AT4G05200 474 / 3e-159 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Potri.004G024140 [exp] 557 / 0 AT4G23180 497 / 3e-168 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018382 [exp] 478 / 1e-161 AT4G21410 605 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Lus10031579 [exp] 422 / 3e-140 AT4G23160 477 / 8e-154 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (.1) Lus10015092 [exp] 420 / 4e-140 AT4G23180 397 / 1e-130 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10031578 [exp] 419 / 2e-139 AT4G23180 422 / 5e-134 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10031582 [exp] 406 / 3e-134 AT4G05200 436 / 6e-145 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10031580 [exp] 404 / 8e-133 AT4G23160 424 / 1e-139 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (.1) Lus10018408 [exp] 404 / 5e-130 AT4G21390 936 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10033752 [exp] 382 / 8e-129 AT4G03230 497 / 6e-169 S-locus lectin protein kinase family protein (.1) Lus10038552 [exp] 397 / 2e-128 AT4G27290 879 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10007632 [exp] 391 / 9e-128 AT4G05200 624 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01657 [poplar] [flax] Stress-antifung Salt stress response/antifungal CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.011G027900.2 pacid=42780762 polypeptide=Potri.011G027900.2.p locus=Potri.011G027900 ID=Potri.011G027900.2.v4.1 annot-version=v4.1 ATGCTTTTGTTGTTGTACTTTTCCATTGCCAACCTTCTTAATCTTGCTTATGCTGATCCACCCTACAGTTTTTGCTCAAGCACATCTCCATATGCAGCTA ACAGTCCATTTCAAAACAATCTCAAGTCCCTCATGTCTTATCTTGCCTCAAATGCTTCTGTGTCGAATCAATATCATGCCTATGCTGGAAATGACCCTGA TAGAGTCTATGCTCATTATATGTGCTACAACTACATAACATTTGAAAAGTGCAGTGCCTGCATTGATGCAGCATCACAAGATATCATGCAACTCTGTCCA AACATAAGAGATGCAGCTGTATGGGAGGAGCTGTGCCAGTTGCGCTTCTCGAATCAAAATTTCTTAGGCCTGCTTGATTTCTCAGGAAACATTCCTTTAT CAAATAGAAAGACGATTAAAAATCCGGAACAGTTAGTATCAGCAGTGAACGAAAATTTCAGTAACCTTACCAAGAAGGCTGCTTTTGTTCCTGCGCGGAA CATGTATGCTACGCGAAAATTAACCTTATCGGATATAGACACCCTTTATGCTCTGGGGCAGTGCAGTACAGATTTGTCATCTCACGATTGTAACACTTGC CTTCAGGTTGCCATACAAAATATTTCAACTTGCTGCTATATCAGTCGAGGGGCACGGCTTCTTAGCCGGAGTTGCTATTTTAGGTATGAGTTATACCCAT TCTATGAAGGCACAGCTGATTCGGATGAGGAAAAAGGTCACCATGCTTTCTTACAGGAACTGAGAAAATCTAGCGAATCGACTTTCGCAGAAGGTAATAA GGTGAGTTCTGAGGAATTACCTTGGATGATGGACCTGAGTGTTATAAGAGCTGCGACAGATAACTTCTCTGTTTCAAACAAGCTTGGACAGGGTGGATTT GGCTCTGTTTACAAGGGGATTCTAAGCGATGGAAGCGAAGTTGCAGTGAAGAGATTATCAAGAAGTTCGGAGCAGGGCGAAAAGGAATTCAAAAATGAAG TTCTATTAATAATGAAACTTCAGCACAAAAATCTTATCAGGCTGCTTGGTTTTTGTGTTGAAGGAGAGGAAAAGCTCCTCGTCTATGAATTCATGCCTAA CAGCAGCCTTGATGTTTTTCTTTTTGATCCTACAAAACGAGCGAAACTTGATTGGAGCAGTAGAATTGATATTATAAATGGAATTGCAAAGGGAATGCTT TATCTTCACGAGGATTCTAGGCTTAGAATCATTCATCGAGACCTAAAAGCTTCTAATGTATTGTTAGACAATGAGATGAATCCGAAGATTTCTGACTTCG GAATGGCAAGGATTTTTTCAAGCAATGAAGACGAAGCCAAGACTGCTCGAATAGTAGGAACATATGGATACATGGCACCAGAATATGCAATGAAAGGATT ATATTCAACCAAATCTGATGTTTTTAGTTTTGGAGTTCTCTTGCTTGAGATCATAAGCGGGAGAAAGAAAGCTGTATACCACCAATTAAAATGTGCTCCT AGCCTCCTTGCATACGCTTGGCAATTATGGAACGAAGGAAATAAAGCAGAGTTGATTGATCCAATGCTGTCTGATTCATGCAATGCAGACGAATTCTCAC GTTACATGCACATTGGTTTATTATGTGTTCAAGAAGATGCTAGCGACAGACCTACAATGTCATCTGTTGTCTTAATGCTGAAAAGCCAAAATTCATTTCT TCCCCAACCTGAGCGGCCGGCTTTTGTGGGAAGATTCATGGACAACCTGGAGGCAACTGCTAGCAATTTCTCTGTCAATGAAATGACACTTTCTGATGTT GGTCCACGCTGA
AA sequence Show only first row Show all	>Potri.011G027900.2 pacid=42780762 polypeptide=Potri.011G027900.2.p locus=Potri.011G027900 ID=Potri.011G027900.2.v4.1 annot-version=v4.1 MLLLLYFSIANLLNLAYADPPYSFCSSTSPYAANSPFQNNLKSLMSYLASNASVSNQYHAYAGNDPDRVYAHYMCYNYITFEKCSACIDAASQDIMQLCP NIRDAAVWEELCQLRFSNQNFLGLLDFSGNIPLSNRKTIKNPEQLVSAVNENFSNLTKKAAFVPARNMYATRKLTLSDIDTLYALGQCSTDLSSHDCNTC LQVAIQNISTCCYISRGARLLSRSCYFRYELYPFYEGTADSDEEKGHHAFLQELRKSSESTFAEGNKVSSEELPWMMDLSVIRAATDNFSVSNKLGQGGF GSVYKGILSDGSEVAVKRLSRSSEQGEKEFKNEVLLIMKLQHKNLIRLLGFCVEGEEKLLVYEFMPNSSLDVFLFDPTKRAKLDWSSRIDIINGIAKGML YLHEDSRLRIIHRDLKASNVLLDNEMNPKISDFGMARIFSSNEDEAKTARIVGTYGYMAPEYAMKGLYSTKSDVFSFGVLLLEIISGRKKAVYHQLKCAP SLLAYAWQLWNEGNKAELIDPMLSDSCNADEFSRYMHIGLLCVQEDASDRPTMSSVVLMLKSQNSFLPQPERPAFVGRFMDNLEATASNFSVNEMTLSDV GPR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Potri.011G027900 [exp]	0	1
AT4G23280		CRK20	cysteine-rich RLK (RECEPTOR-li...		Potri.011G027600 [exp]	4.69	0.9849
AT1G15100		RHA2A	RING-H2 finger A2A (.1)		Potri.007G086200 [exp]	4.89	0.9819
AT5G35405			Protein of unknown function (D...		Potri.002G229600 [exp]	8.36	0.9884
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Potri.011G027800 [exp]	8.66	0.9481
AT5G35405			Protein of unknown function (D...		Potri.002G229650 [exp]	8.94	0.9884
					Potri.001G259204 [exp]	9.74	0.9433
AT3G11930			Adenine nucleotide alpha hydro...		Potri.006G198200 [exp]	10.00	0.9884
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Potri.006G247800 [exp]	11.66	0.9467
					Potri.014G065200 [exp]	11.95	0.9771
					Potri.009G102850 [exp]	12.40	0.9670

Compare expression of checked genes

Potri.011G027900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.