Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G05200 519 / 1e-176 CRK25 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) AT4G23200 471 / 3e-158 CRK12 cysteine-rich RLK (RECEPTOR-like protein kinase) 12 (.1) AT4G23220 466 / 2e-155 CRK14 cysteine-rich RLK (RECEPTOR-like protein kinase) 14 (.1) AT4G21410 460 / 1e-153 CRK29 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) AT4G23140 459 / 4e-153 RLK5, CRK6 cysteine-rich RLK (RECEPTOR-like protein kinase) 6 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 6 (.2) AT4G23160 474 / 6e-153 CRK8 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (.1) AT4G23270 452 / 5e-151 CRK19 cysteine-rich RLK (RECEPTOR-like protein kinase) 19 (.1) AT4G23130 449 / 9e-150 RLK6, CRK5 RECEPTOR-LIKE PROTEIN KINASE 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.2) AT4G11460 450 / 1e-149 CRK30 cysteine-rich RLK (RECEPTOR-like protein kinase) 30 (.1) AT4G23280 437 / 5e-145 CRK20 cysteine-rich RLK (RECEPTOR-like protein kinase) 20 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G023788 [exp] 947 / 0 AT4G23180 559 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G024228 [exp] 946 / 0 AT4G23180 551 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G024052 [exp] 936 / 0 AT4G23180 545 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G024101 [exp] 927 / 0 AT4G23180 531 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.011G027800 [exp] 759 / 0 AT4G23180 516 / 9e-176 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G024000 [exp] 553 / 0 AT4G23180 489 / 4e-165 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G023700 [exp] 552 / 0 AT4G05200 474 / 3e-159 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Potri.004G023550 [exp] 548 / 0 AT4G05200 541 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Potri.004G024140 [exp] 542 / 0 AT4G23180 497 / 3e-168 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007632 [exp] 506 / 2e-171 AT4G05200 624 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10018382 [exp] 473 / 1e-158 AT4G21410 605 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Lus10007633 [exp] 433 / 4e-143 AT4G05200 566 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10031579 [exp] 432 / 6e-143 AT4G23160 477 / 8e-154 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (.1) Lus10018379 [exp] 425 / 4e-140 AT4G23180 566 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10015091 [exp] 443 / 2e-139 AT5G54650 556 / 1e-178 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Lus10026629 [exp] 421 / 3e-138 AT4G23180 540 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10015094 [exp] 417 / 5e-137 AT4G23160 432 / 7e-143 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (.1) Lus10031582 [exp] 409 / 2e-134 AT4G05200 436 / 6e-145 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10031580 [exp] 408 / 2e-133 AT4G23160 424 / 1e-139 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01657 [poplar] [flax] Stress-antifung Salt stress response/antifungal CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.011G028100.2 pacid=42781508 polypeptide=Potri.011G028100.2.p locus=Potri.011G028100 ID=Potri.011G028100.2.v4.1 annot-version=v4.1 ATGGCTTCTAGTTTTCCCAGTTTTGAAAAAACAATTCAATTTCTTTGGCTTTGTTTTTTCATTAGCAACCTTCTTGATCTTGCTCATGCCGATCCTCCTT ACAGTGTTTGCTCAAACAATTCTAACTATTCAGCCAATAGTACATTCCAAAACAATCTCCAGATCCTCATGTCCTCCGTTCGTTCAAATGCATCAGTTTC AAAACTTTACAATACCTCTACTGGAAATGACCTTGACAGAATCTATGCTCAATATATGTGCATCAACTATATAACAAATGATAGCTGCAGTACTTGCATA ACGGCAGCATCACAAGATATCATGCAGGTTTGTCCAGGAGATAAGGAAGCAGTTGTATGGGAAGAGCTATGTCAATTGCGCTACTCGAATCAAAGTTTCT TAGGCCACTTGGATGTCTCAGGAAACATTGGCCGAGATAATAAAAAAGATGTTGAGAATCCAGAGCAGTTCAGATTGGTGGTCAATGAAACTTTGAGTGA CCTTACCAAGCAGGTAGCTTTTAATGCTTCGGCAAATATGTACGCTACTAGACAAGCAGCCTTCACCAATACAGAAACACTGTATGCCTTGATGCAATGC TCCACAGACTTATCTCCAGATGATTGTAACACGTGCCTTCGGGTTGCCATGGAAAATATTCCCAGTTGCTGTGATGCTTCTCGTGGAGGGCGGGTTCTTA GCCGCAGTTGCTACTTAAGGTATGAGTTATACGCTTTCTATGAAGGTGCCAATAACGAATCTTCAAAAAGTCCTGTTCCAGAAGAAAAAATTAATGGAGG CAACAGAAGAAAAACATGGATTATTATCATCCTGACAGTTGCAGCAGCACTTCTCGTGGTGGTCATCTTAGGCTCCCTTACCTTCTATCACGCGATGAGA AATGGAATTAAAAAATGGAAAAAACAAAATACAGGACTGGATAGAAATTGTCATGGGATCGGTCACCCAAACAACAATGATTTCCAGCTCCAAAATTTTC AGAGAGATGACCTTAATGATGGGGAATCTGCATTTATGGATTTGGCATCTATATATGCAGCTACTGGTAACTTCTCTGACTCAAATTTGCTTGGACGAGG TGGTTTTGGCCCAGTTTATAAGGGAAAACTGAGTGATGGAAAAGAAGTTGCAGTGAAGAGACTTTCAGCTTGCTCTGAGCAAGGCACAGATGAGTTTACC AATGAAGTTATGCTAATCATGAAACTCCAGCACAAAAATCTTGTCAAGCTTCTCGGCCTTTGTGTTGATGGAGATGAAAAGCTTCTGGTCTATGAATTCA TGCCTAACAGAAGCCTAGATGTTTTCCTCTTTGATAAAAAGGAACGTGCACGGCTCAATTGGCGAACACGAATTGGTATCGTAAATGGAATTGCAAAGGG CACTCTTTATCTCCATGAGGATTCTAGGCATAGAATTATTCATCGAGACCTGAAAGCTAGCAATGTGTTGTTGGACAAGGATATGAACCCAAAAATCTCA GACTTTGGAATGGCAAGGATGTTTGCAGGCAGCGAAGGCGAAGCCAATACTGCTAGGATAGTTGGAACATATGGATACATGGCACCAGAGTATGCAATGG AAGGATTATACTCCACCAAGTCTGATGTTTTTAGTTTTGGAGTTCTTCTGCTTGAGATCATAACTGGAAAAAGGAATTCTGAATTCAACAAATCGAAACG TGCTCCGAGCCTCCTAGCTTATGCATGGCAATTATGGAACGAAGGAAAAGAACTAGAGTTGATAGATCCACTGATGGCTGATTCATGCTGTTCGGATGAA TTTTCGCGATCCATGCATATCGGTTTATTGTGCGTCCAAGAAGATCCTTGTGAGAGGCCTACCATGTCCTCGGTTGTTTTAATGCTGAAAAGAGAGAGTT CAATTCTTACCCAACCTGATCGGCCAGCATTTTCTGTGGGAAGATTCGCAGACTACGAGGCTAATGCTGGCAATTGTTCTGTCAATGCTTTAACAATTTC AAGTATTTCGCCCCGTTGA
AA sequence Show only first row Show all	>Potri.011G028100.2 pacid=42781508 polypeptide=Potri.011G028100.2.p locus=Potri.011G028100 ID=Potri.011G028100.2.v4.1 annot-version=v4.1 MASSFPSFEKTIQFLWLCFFISNLLDLAHADPPYSVCSNNSNYSANSTFQNNLQILMSSVRSNASVSKLYNTSTGNDLDRIYAQYMCINYITNDSCSTCI TAASQDIMQVCPGDKEAVVWEELCQLRYSNQSFLGHLDVSGNIGRDNKKDVENPEQFRLVVNETLSDLTKQVAFNASANMYATRQAAFTNTETLYALMQC STDLSPDDCNTCLRVAMENIPSCCDASRGGRVLSRSCYLRYELYAFYEGANNESSKSPVPEEKINGGNRRKTWIIIILTVAAALLVVVILGSLTFYHAMR NGIKKWKKQNTGLDRNCHGIGHPNNNDFQLQNFQRDDLNDGESAFMDLASIYAATGNFSDSNLLGRGGFGPVYKGKLSDGKEVAVKRLSACSEQGTDEFT NEVMLIMKLQHKNLVKLLGLCVDGDEKLLVYEFMPNRSLDVFLFDKKERARLNWRTRIGIVNGIAKGTLYLHEDSRHRIIHRDLKASNVLLDKDMNPKIS DFGMARMFAGSEGEANTARIVGTYGYMAPEYAMEGLYSTKSDVFSFGVLLLEIITGKRNSEFNKSKRAPSLLAYAWQLWNEGKELELIDPLMADSCCSDE FSRSMHIGLLCVQEDPCERPTMSSVVLMLKRESSILTQPDRPAFSVGRFADYEANAGNCSVNALTISSISPR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G05200		CRK25	cysteine-rich RLK (RECEPTOR-li...		Potri.011G028100 [exp]	0	1
AT3G10720			Plant invertase/pectin methyle...		Potri.008G011100 [exp]	1.73	0.9760
AT5G54370			Late embryogenesis abundant (L...		Potri.012G145400 [exp]	2.44	0.9544
AT5G45120			Eukaryotic aspartyl protease f...		Potri.015G113100 [exp]	3.46	0.9345
AT4G35220			Cyclase family protein (.1)		Potri.001G301700 [exp]	4.24	0.9589
AT3G55470			Calcium-dependent lipid-bindin...		Potri.010G203100 [exp]	5.47	0.9504
AT4G25560	MYB	LAF1, ATMYB18	LONG AFTER FAR-RED LIGHT 1, my...		Potri.015G143400 [exp]	6.00	0.9526
AT1G53130		GRI	GRIM REAPER, Stigma-specific S...		Potri.011G118600 [exp]	7.07	0.9508
AT4G12480		PEARLI 1 1, PEA...	EARLY ARABIDOPSIS ALUMINUM IND...		Potri.001G122100 [exp]	8.12	0.9372
AT4G37160		SKS15	SKU5 similar 15 (.1)		Potri.007G038200 [exp]	9.48	0.9467
AT5G06905		CYP712A2	"cytochrome P450, family 712, ...		Potri.016G050200 [exp]	11.22	0.9472	CYP712.2

Compare expression of checked genes

Potri.011G028100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.