Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G05200 709 / 0 CRK25 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) AT4G23180 701 / 0 RLK4, CRK10 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) AT4G23160 657 / 0 CRK8 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (.1) AT4G23140 645 / 0 RLK5, CRK6 cysteine-rich RLK (RECEPTOR-like protein kinase) 6 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 6 (.2) AT4G23280 639 / 0 CRK20 cysteine-rich RLK (RECEPTOR-like protein kinase) 20 (.1) AT4G23150 638 / 0 CRK7 cysteine-rich RLK (RECEPTOR-like protein kinase) 7 (.1) AT4G23270 637 / 0 CRK19 cysteine-rich RLK (RECEPTOR-like protein kinase) 19 (.1) AT3G45860 624 / 0 CRK4 cysteine-rich RLK (RECEPTOR-like protein kinase) 4 (.1) AT4G23130 620 / 0 RLK6, CRK5 RECEPTOR-LIKE PROTEIN KINASE 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.2) AT4G38830 570 / 0 CRK26 cysteine-rich RLK (RECEPTOR-like protein kinase) 26 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G024800 [exp] 910 / 0 AT4G23180 663 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G024404 [exp] 890 / 0 AT4G23180 671 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G025800 [exp] 888 / 0 AT4G23180 648 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G025650 [exp] 859 / 0 AT4G23180 646 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G024500 [exp] 858 / 0 AT4G23180 675 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G025900 [exp] 845 / 0 AT4G23130 573 / 0.0 RECEPTOR-LIKE PROTEIN KINASE 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.2) Potri.004G024900 [exp] 845 / 0 AT4G23180 506 / 1e-171 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G025200 [exp] 729 / 0 AT4G23180 665 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G026100 [exp] 722 / 0 AT4G23180 662 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007632 [exp] 625 / 0 AT4G05200 624 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10018382 [exp] 615 / 0 AT4G21410 605 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Lus10007633 [exp] 569 / 0 AT4G05200 566 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10018379 [exp] 566 / 0 AT4G23180 566 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10026629 [exp] 536 / 0 AT4G23180 540 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10018377 [exp] 487 / 4e-163 AT4G05200 489 / 4e-164 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10015091 [exp] 495 / 9e-159 AT5G54650 556 / 1e-178 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Lus10031582 [exp] 447 / 3e-149 AT4G05200 436 / 6e-145 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10031579 [exp] 439 / 8e-146 AT4G23160 477 / 8e-154 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (.1) Lus10015094 [exp] 439 / 2e-145 AT4G23160 432 / 7e-143 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01657 [poplar] [flax] Stress-antifung Salt stress response/antifungal CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.011G028400.1 pacid=42781370 polypeptide=Potri.011G028400.1.p locus=Potri.011G028400 ID=Potri.011G028400.1.v4.1 annot-version=v4.1 ATGGACTCTCTCAAATTCTCCACAGTCCTTCTCTCCTTGCTGAGCCTTGCTATTATCACTCAAGCACAGGATCCCACTTTCCTATATCCTTATTGCCCAA ACACAACCACCTTCACAAGGAACAGCACTTACCAGGCTAATTTAAATCTCCTCCTATCTTCACTTTCATCAAACGCAACCCGCAACAACATCAATGGATT CTACAACGTCTCTGCAGGACAGGATCCTGATGCAGTCTATGGCATGTTTCTTTGCCGTGGTGATGTTAGCAACAGTGTTTGTCGAAATTGTGTCAACTTC GCTGCCAAAGACGTCCTCGAAAGGTGCCCAATTGAGAAAGTAGCTATGATATGGTATGATGAGTGTGAATTGCGTTACTCAAATAGAAACATCTTCTCTA CTGTGGACCAAGACTTTACCCTATTCATGATGAGCCCAAACAATGTTACAGTCCAACCTGATCGTTTTAACCAGCTAGTAGCAACCACCATAAATGATAT AGCTGCTCGGGCTGCTTCTGCTCCTTCAGGTGCTAAGAAGTTTGCAGTTCAACAAGTGAACTATACTGGGATCCAGAAATTATACACTCTTGTGCAGTGT ACACCAGATCTATCCACTCCAGATTGTAGCCGTTGTCTTGAGGGAGCTATTTCAAAATTAGGCAATTGCTGTAATAGAAAGCAAGGAGGAAGGGTCATAT TTCCAAGTTGTAATTTTCGGTATGAACTTTATGAATTTTATAATGCAACGGCAGCAGCTGAGGCTGCACCGCCACCTCCGCCTGTGGCTCTACCTCCTCC TCCAGCTTCAGGTCCAGAGACAAGAAGAAAAGGAAAAGGCGGTGTCTCAACAGTTTTAATTATAGCCATTTTGATCCCAGTTACTGTTTCTCTTGTGCTT TTCTGCCTGGGTTTCTGTTTCTTGAGTAGAAGGGCGAAGAGCAATAAAAATTCTGCACAGGAAAATGATGTTGGAAATGAGATTACAAACGTGGAGTCAT TACAATTCGATTTGAGTTCTATACAAGATGCCACAAACCATTTCTCCGCTGATAACAAGTTAGGTGAAGGTGGATTTGGTGAGGTTTACAAGGGAACACT TCCTAATGGACAAGCAATAGCTGTGAAGAGGCTATCGAAAGGCTCAGGACAAGGTGCAGCGGAATTTAAGAATGAGGTTATCTTGGTAGCTAAGCTTCAA CACAGGAATTTAGTGAGGTTGCTAGGATTTTGCTTGGAAGGAGAAGAAAAAATTCTTGTCTATGAATTTGTGCCAAACAAAAGCCTCGACTACTTTGTAT TTGACCCAGAGAAGCAAGGGCTACTGGATTGGTCTAAACGATACAAAATAATAGGAGGAATTGCTCGAGGAATTCTTTATCTACACGAGGACTCTAGGCT AAGAGTTATACATCGTGACCTTAAAGCCAGTAATATTTTGCTTGATGGAGATATGAACGCCAAAGTTTCAGATTTCGGCATGGCTAGGATTTTCGGAGTT GATCAAACTCAAGGATGTACCAACAGAATTGTTGGAACATATGGTTATATGTCTCCAGAATATGCAATGCATGGGCAGTTCTCCGTCAAGTCTGATGCTT ATAGCTTTGGTGTCTTAATTCTTGAAATTATATCTGGAAAGAAGAACAGTTCTTTCTATCAAACTGGCGGTGCTGCAGACCTTGCGAGCTATGCATGGAA ACATTGGAGAGATGGGACACCATTGGAAGTGATGGATCCAACTCTGGCGGATACGTATTCAAGAAATGAGGTAATGAGATGCATCCACATTGGATTGTTA TGTGTTCAGGAAGATCCAGCTTCCAGGCCCACAATGGCAACAGTTGTTCTCCTGCTCAATAGTTACTCGATTACCTTACCATTACCTCAAGAGCCTGCAT TTTTTCTCCATAGTAGAACAGATCAAGGGTCAATTCCAAGCAAGGAATTTTTTGCAGATAAATCTAAGAGCAATTCTGTGCCATATTCTGGCGATGAAGG TTCAATTACTGAAGTATATCCTCGATAG
AA sequence Show only first row Show all	>Potri.011G028400.1 pacid=42781370 polypeptide=Potri.011G028400.1.p locus=Potri.011G028400 ID=Potri.011G028400.1.v4.1 annot-version=v4.1 MDSLKFSTVLLSLLSLAIITQAQDPTFLYPYCPNTTTFTRNSTYQANLNLLLSSLSSNATRNNINGFYNVSAGQDPDAVYGMFLCRGDVSNSVCRNCVNF AAKDVLERCPIEKVAMIWYDECELRYSNRNIFSTVDQDFTLFMMSPNNVTVQPDRFNQLVATTINDIAARAASAPSGAKKFAVQQVNYTGIQKLYTLVQC TPDLSTPDCSRCLEGAISKLGNCCNRKQGGRVIFPSCNFRYELYEFYNATAAAEAAPPPPPVALPPPPASGPETRRKGKGGVSTVLIIAILIPVTVSLVL FCLGFCFLSRRAKSNKNSAQENDVGNEITNVESLQFDLSSIQDATNHFSADNKLGEGGFGEVYKGTLPNGQAIAVKRLSKGSGQGAAEFKNEVILVAKLQ HRNLVRLLGFCLEGEEKILVYEFVPNKSLDYFVFDPEKQGLLDWSKRYKIIGGIARGILYLHEDSRLRVIHRDLKASNILLDGDMNAKVSDFGMARIFGV DQTQGCTNRIVGTYGYMSPEYAMHGQFSVKSDAYSFGVLILEIISGKKNSSFYQTGGAADLASYAWKHWRDGTPLEVMDPTLADTYSRNEVMRCIHIGLL CVQEDPASRPTMATVVLLLNSYSITLPLPQEPAFFLHSRTDQGSIPSKEFFADKSKSNSVPYSGDEGSITEVYPR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G05200		CRK25	cysteine-rich RLK (RECEPTOR-li...		Potri.011G028400 [exp]	0	1
AT3G20600		NDR1	non race-specific disease resi...		Potri.011G133900 [exp]	5.74	0.8664	Pt-NDR1.2
AT5G66850		MAPKKK5	mitogen-activated protein kina...		Potri.014G035500 [exp]	5.83	0.8921
AT1G20780		ATPUB44, SAUL1	ARABIDOPSIS THALIANA PLANT U-B...		Potri.010G079200 [exp]	7.21	0.8846
AT2G45910			U-box domain-containing protei...		Potri.001G239100 [exp]	10.04	0.8029
AT5G48380		BIR1	BAK1-interacting receptor-like...		Potri.010G178050 [exp]	10.09	0.8918
AT4G37260	MYB	ATMYB73	myb domain protein 73 (.1)		Potri.014G022500 [exp]	10.58	0.8772	MYB173
AT3G18670			Ankyrin repeat family protein ...		Potri.015G125000 [exp]	10.67	0.8866
AT3G09830			Protein kinase superfamily pro...		Potri.006G126000 [exp]	11.18	0.8846
AT2G23460		ATXLG1, XLG1	extra-large G-protein 1 (.1)		Potri.009G109400 [exp]	12.48	0.8817
AT2G23450			Protein kinase superfamily pro...		Potri.007G034500 [exp]	13.22	0.8390

Compare expression of checked genes

Potri.011G028400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.