Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21410 554 / 0 CRK29 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) AT4G38830 535 / 0 CRK26 cysteine-rich RLK (RECEPTOR-like protein kinase) 26 (.1) AT4G05200 521 / 3e-177 CRK25 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) AT4G23180 510 / 4e-173 RLK4, CRK10 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) AT4G23150 500 / 2e-169 CRK7 cysteine-rich RLK (RECEPTOR-like protein kinase) 7 (.1) AT4G21230 499 / 4e-169 CRK27 cysteine-rich RLK (RECEPTOR-like protein kinase) 27 (.1) AT4G21400 496 / 3e-167 CRK28 cysteine-rich RLK (RECEPTOR-like protein kinase) 28 (.1) AT4G23130 491 / 8e-166 RLK6, CRK5 RECEPTOR-LIKE PROTEIN KINASE 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.2) AT4G00970 488 / 2e-164 CRK41 cysteine-rich RLK (RECEPTOR-like protein kinase) 41 (.1) AT4G23140 488 / 2e-164 RLK5, CRK6 cysteine-rich RLK (RECEPTOR-like protein kinase) 6 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 6 (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G029300 [exp] 1082 / 0 AT4G21410 539 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.011G030300 [exp] 1062 / 0 AT4G21410 533 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.011G030212 [exp] 1061 / 0 AT4G21410 537 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.004G025425 [exp] 711 / 0 AT4G21410 556 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.004G026200 [exp] 701 / 0 AT4G05200 573 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Potri.004G026350 [exp] 660 / 0 AT4G21410 610 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.011G030000 [exp] 636 / 0 AT4G21410 566 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.011G028800 [exp] 635 / 0 AT4G21410 573 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.011G029700 [exp] 632 / 0 AT4G21410 578 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018382 [exp] 610 / 0 AT4G21410 605 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Lus10007632 [exp] 592 / 0 AT4G05200 624 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10018379 [exp] 549 / 0 AT4G23180 566 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10026629 [exp] 548 / 0 AT4G23180 540 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10007633 [exp] 535 / 0 AT4G05200 566 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10015091 [exp] 481 / 2e-153 AT5G54650 556 / 1e-178 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Lus10031579 [exp] 444 / 1e-147 AT4G23160 477 / 8e-154 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (.1) Lus10031582 [exp] 418 / 9e-138 AT4G05200 436 / 6e-145 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10031580 [exp] 415 / 6e-136 AT4G23160 424 / 1e-139 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (.1) Lus10027146 [exp] 414 / 9e-136 AT4G23180 451 / 1e-150 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PF01657 [poplar] [flax] Stress-antifung Salt stress response/antifungal
Representative CDS sequence Show only first row Show all	>Potri.011G028600.1 pacid=42782221 polypeptide=Potri.011G028600.1.p locus=Potri.011G028600 ID=Potri.011G028600.1.v4.1 annot-version=v4.1 ATGGCTTCTTCCAGATTGTTTTTTTCTCTCTGTCTTCTGTTCGTGGAAGTTCTGGCTCTAGCTAAGGCACAGCAGCCAGTAGACCAGCCTAAGATGTCAT ATCACGACTGTGTAGGAAAGGGCAACTACACCACGAACAGTACTTACCAGGCAAATCTCAATCAACTCCTCACCTCTATCTACACCAACACTGAAATAAA CAATGGCTTTTACAACTTTTCCAACGGCCAAGACGCGGACACAGTCTATTCAATTGCACTTTGTAGACCGGATATCAGTCCTGATGCCTGCCGCAGTTGC ATAAGAAATGCTAGTGATTCCCTGGTAAGACTCTGTCCAAACTTCGTGGAGGCAATTGGAGGGTTAGATGATTGTACGGTACGCTACACAAACCGCTCCA TATTTAATCGCATGGAGAAAGGACCTTATTTTTGGGTGTATGATGATCGAGTTAATGTCTCTGATGTAGTCGGGTTCAATCAGTCACGGATGACCTTGTT AGATAGGCTGAGAGATGAAGCAGCAGCAGGGGATTCTCGTTACAAGTATGCAATGGATCAAATAGCTGCCCCAGCCCCAAACTTTCAAACAATATATGCA CTTGTACAGTGTACTCCTGATTTATCTGCTTCGGAATGCAGGGATTGCCTGTATAATGCTTCAGGACTTATTCCAAAGTGTTGTGATGCAAGACAAGGAG GAAGAGTTATTTATCCAAGCTGTAATTTTAGGTATGAAATAGACCGTTTCTATGACCCTTCGATTAATTCAATCCCGCCACCACCAGATTCAACTTCGAC TAATACAGTTCCATCACCACCAGCTTCAACTTCACAAGGAAAGAAGGGCATGAAGAGAAATGTCCTCATCATCATTTCCATGGTTCCGATAGCTGTTTCT GTGATTCTTATAGTTTGCGTCTGCATCTTCTTAAGAGCTAGGAGGAAGCAGAAGGGGGAAGAGGAAGAGGAAGAGGAAGAGGAAGCTAAAGATTTAAATG AAATGGAAGATGTAGAATTGCTCCAACTTGATTTTGGCACTGTCAGAGAAGCAACAGGTAACTTCTCTGAGGATAATAAACTTGGACAAGGAGGATTTGG TGCCGTGTACAAGGGCACTCTGACGAGTGGACAAGATATAGCTGTAAAGAGATTGTCTAGGACATCAGGACAAGGAGAGATAGAATTCAAGAATGAGGTC ATGTTAGTTGCCAAGCTTCAGCATCGGAATTTGGTTAGACTCCTGGGTTTCTGCTATGAGAAAGAAGAAAGGATTCTTGTCTATGAGTTTCTCCCCAACT CGAGCCTCAACAACTTGATATTTGATCCAGTCAAGCGTGTACTTCTAGATTGGGAAACCCTCTACGAAATCATAGATGGCATTGCAAGGGGGCTTCTTTA CCTACATGAAGACTCTCGACTACGGATTATTCATCGTGATCTCAAAGCTGCTAACATTCTGCTAGATGAGAACATGAATCCAAAAATCTCAGATTTTGGA ATGGCAAGAATGTTTGCTATGGATCAAGCTCAAGATAGCACGAGTAGAGTAGTTGGGACCTTCGGGTATATGGCTCCAGAATATGTTATCCGTGGACATT TCTCAGTTAAATCAGATGTATATAGCTTTGGTGTCTTAGTTTTAGAAATTGTTAGTGGTCGAAAGATTGGTGGCAGGGGCATAGGAGACGAAGGAGAGGA CCTTCTAACCTATTCATGGAGAAAATGGAATGATGGGACACCTTTAGACATAATAGATCCTACCTTGAATGATGGTCCAAGAAATGAAATTATGAGATGC ATCATCATCGGATTACTCTGTGTTCAGGAAAAAGAAGCCCTCAGACCAACTATGGCTCAAGTTTCTATGATGCTTAGTAGCTACTCTGTCACTCTCGCAG CACCCTCAAAACCTGCATTTTTTATGCACAGAGAAGACTCGTTTCCGTCACCGGTGAATGCTTCAAGGTTAATTGAGTCGGATGAATCCAGAACTAGATC TTCCCGGTGGTCTAACAATGAGGTTTCCATCACTGAGCTGGACCCTCGATAA
AA sequence Show only first row Show all	>Potri.011G028600.1 pacid=42782221 polypeptide=Potri.011G028600.1.p locus=Potri.011G028600 ID=Potri.011G028600.1.v4.1 annot-version=v4.1 MASSRLFFSLCLLFVEVLALAKAQQPVDQPKMSYHDCVGKGNYTTNSTYQANLNQLLTSIYTNTEINNGFYNFSNGQDADTVYSIALCRPDISPDACRSC IRNASDSLVRLCPNFVEAIGGLDDCTVRYTNRSIFNRMEKGPYFWVYDDRVNVSDVVGFNQSRMTLLDRLRDEAAAGDSRYKYAMDQIAAPAPNFQTIYA LVQCTPDLSASECRDCLYNASGLIPKCCDARQGGRVIYPSCNFRYEIDRFYDPSINSIPPPPDSTSTNTVPSPPASTSQGKKGMKRNVLIIISMVPIAVS VILIVCVCIFLRARRKQKGEEEEEEEEEAKDLNEMEDVELLQLDFGTVREATGNFSEDNKLGQGGFGAVYKGTLTSGQDIAVKRLSRTSGQGEIEFKNEV MLVAKLQHRNLVRLLGFCYEKEERILVYEFLPNSSLNNLIFDPVKRVLLDWETLYEIIDGIARGLLYLHEDSRLRIIHRDLKAANILLDENMNPKISDFG MARMFAMDQAQDSTSRVVGTFGYMAPEYVIRGHFSVKSDVYSFGVLVLEIVSGRKIGGRGIGDEGEDLLTYSWRKWNDGTPLDIIDPTLNDGPRNEIMRC IIIGLLCVQEKEALRPTMAQVSMMLSSYSVTLAAPSKPAFFMHREDSFPSPVNASRLIESDESRTRSSRWSNNEVSITELDPR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G21410		CRK29	cysteine-rich RLK (RECEPTOR-li...		Potri.011G028600 [exp]	0	1
AT2G31880		SOBIR1, EVR	SUPPRESSOR OF BIR1 1, EVERSHED...		Potri.012G090500 [exp]	3.00	0.9810
AT1G68040			S-adenosyl-L-methionine-depend...		Potri.019G016112 [exp]	3.16	0.9768
AT5G27060		AtRLP53	receptor like protein 53 (.1)		Potri.011G054500 [exp]	4.47	0.9748
AT1G45616		AtRLP6	receptor like protein 6 (.1)		Potri.016G126900 [exp]	6.92	0.9714
					Potri.017G111150 [exp]	7.07	0.9728
AT1G07390		AtRLP1	receptor like protein 1 (.1.2....		Potri.018G117927 [exp]	9.38	0.9649
AT2G05940		RIPK	RPM1-induced protein kinase, P...		Potri.001G168000 [exp]	9.53	0.9583
AT1G45616		AtRLP6	receptor like protein 6 (.1)		Potri.012G025400 [exp]	12.36	0.9569
AT1G30760			FAD-binding Berberine family p...		Potri.001G462700 [exp]	12.68	0.9709
AT1G76980			unknown protein		Potri.005G064700 [exp]	13.19	0.9471

Compare expression of checked genes

Potri.011G028600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.