Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21410 460 / 4e-152 CRK29 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) AT4G38830 454 / 4e-150 CRK26 cysteine-rich RLK (RECEPTOR-like protein kinase) 26 (.1) AT4G23180 448 / 1e-147 RLK4, CRK10 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) AT4G23230 436 / 5e-145 CRK15 cysteine-rich RLK (RECEPTOR-like protein kinase) 15 (.1) AT4G05200 439 / 2e-144 CRK25 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) AT4G00970 431 / 4e-141 CRK41 cysteine-rich RLK (RECEPTOR-like protein kinase) 41 (.1) AT4G21230 430 / 4e-141 CRK27 cysteine-rich RLK (RECEPTOR-like protein kinase) 27 (.1) AT4G23140 429 / 2e-140 RLK5, CRK6 cysteine-rich RLK (RECEPTOR-like protein kinase) 6 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 6 (.2) AT4G11530 429 / 2e-140 CRK34 cysteine-rich RLK (RECEPTOR-like protein kinase) 34 (.1) AT4G23160 437 / 2e-137 CRK8 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G026350 [exp] 527 / 2e-178 AT4G21410 610 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.011G030200 [exp] 521 / 1e-176 AT4G23220 558 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 14 (.1) Potri.011G029800 [exp] 520 / 2e-175 AT4G23220 568 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 14 (.1) Potri.011G029100 [exp] 519 / 3e-175 AT4G23220 570 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 14 (.1) Potri.011G030012 [exp] 514 / 1e-173 AT4G23220 564 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 14 (.1) Potri.011G029700 [exp] 509 / 4e-171 AT4G21410 578 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.011G028800 [exp] 509 / 6e-171 AT4G21410 573 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.011G030000 [exp] 506 / 6e-170 AT4G21410 566 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.011G029201 [exp] 504 / 1e-169 AT4G23220 558 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 14 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018382 [exp] 487 / 1e-162 AT4G21410 605 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Lus10007632 [exp] 483 / 7e-161 AT4G05200 624 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10018379 [exp] 482 / 1e-160 AT4G23180 566 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10007633 [exp] 444 / 6e-146 AT4G05200 566 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10026629 [exp] 442 / 6e-145 AT4G23180 540 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10015091 [exp] 417 / 3e-128 AT5G54650 556 / 1e-178 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Lus10031579 [exp] 393 / 2e-126 AT4G23160 477 / 8e-154 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (.1) Lus10027146 [exp] 375 / 9e-120 AT4G23180 451 / 1e-150 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10007611 [exp] 379 / 3e-119 AT1G11340 751 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038557 [exp] 375 / 8e-118 AT4G27290 803 / 0.0 S-locus lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01657 [poplar] [flax] Stress-antifung Salt stress response/antifungal CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.011G028700.2 pacid=42781864 polypeptide=Potri.011G028700.2.p locus=Potri.011G028700 ID=Potri.011G028700.2.v4.1 annot-version=v4.1 ATGTATTCCTTAAGACTAATAGTGTTGTTTTCCTTTTCTTGTGTTCTTCTATCCTCACTGAGTATTGCTCAACCAGATTTCTTGTACCAGTCTTGCAGAA ACACCGAAAACAACTACACAGCTAACAGCACTTTCCAAAAGAACCTTGACAGCCTCCTTTCTTCTCTGGCCTCCAATACCCAAATTGACTACGGATATTA TAATTTCTCTGCTGGTCAAATAGGCCCTGACCAAGTACATGCAATTGCACTTTGTAGAGGAGATATTTTGCTGAATGAGTGTCGAGGTTGCGTTAGTAAC TCTGGGCGTAAGATCTTACAGGTTTGTCCTAACCAGAAAGAGGCGATAGGAATTTATGATTTCTGTATTCTACGATACTCCAACAGATCCTCGTTTGGTG TCTTAGACGAAGAGTTTATTGTGTATACTTGGAACACAGAAAATGCCTCGCATGTGAATCTATTCAGTCAGGCACTTGGAAACTTAACAAGTCGACTTCG TACAGCTGCAGCTTCAGGTACTTCACTTCTAAAGTTTGCGACAGGAAATCAAACGGCGGGAATCATTACAATATTTGGACTCGTTCAGTGCATGCCTGAT TTATCAGCCCAGGATTGTGATGATTGCCTGGCTGGGACTTTTCAACAGATTCGAAGCTGTTGTGATGGACAGATCGAAGGAAAAATTGGAGGGAGAATTG TAAGAGGAAGCTACTATTTAAGGTTTGAAACCTACCCTTTTTATAGAGTTACAGCCGCCACATTAGCACAGCTACCACTTCCGCCATCGCCAGAAGCACC GCCAGCTGCAGCTGCAGCTTCAGGTACTTCACTTCTAAAGTTTGCGACAGGAAATCAAACGGCGGGAATCATTACAATATTTGGACTCGTTCAATGCATG CCTGATTTATCAGCCCAGGATTGTGATGATTGCCTGGCTGGGACTTTTCAACAGATTCGAAGCTGTTGTGATGGACAGATCGAAGGAAAGATTGGAGGGA GAATTGTAAGAGGAAGCTGCTATTTAAGGTTTGAAACCTACCCTTTTTATAGAGTTACAGCCGCCACATTAGCACAGCTACCACTTCCGCCATCGCCAGA AGCACCGCCAGCTACAGAGAATGGCAATACAACTCGGAAAGTTGTAATCATCATTGTTTCCATATTAATCTTCATGGCAGTTGTAGTTATCACTTCCATC TTTCTTTATTGTAGGCGGCCAAAGCAAGAGGTCAAGAATTTCAATGAAAATGGAGGCCAAGAATGCGTGCAATTCAGATTTGCATCCATCAGAGTTGCAA CACATAACTTCTCTGATGATAATAAGCTTGGACAAGGTGGTTTTGGTGCTGTTTATAAGGGTCTGCTTCAAGATGGACAAGCAATAGCTGTAAAGAGACT AGCAAGAAATTCTGCACAAGGAGAAGTTGAATTTAAGAACGAGGTCCTGTTAGTGGCAAGGCTTCAGCATAGGAATCTAGTTAGGCTCCATGGTTTCTGC TTCGAAGGAACAGAAAAGCTTCTAGTATATGAGTTTGTGCCTAATTCAAGTCTCGATCAATTCTTATTTGATCCAAGCAAGCGATCGCTCATTGATTGGG AAATACGCTACCAGATCATAGTAGGCATTGCTCGAGGAGTTCTGTACCTTCACCAAGATTCTCAGCTTCGGGTTATTCATCGTGATCTAAAAGCTAGCAA CATTTTGTTAGATGATCAAATGAATGCTAAAATCTCGGATTTTGGCATGGCAAAGCTATTTCAAATGGATCAAACGCAAGATGCTACAAGTAGAATTGTG GGGACCTTGGGCTACATGGCTCCAGAATATGCGATGCATGGATGCTTCTCAGCGAAGTCAGATGTTTTTAGCTTCGGTGTGCTAGTTTTGGAGATTATTA CCGGTCGTCAAAATGGTTCATTCAATAGCGAGGACGAGCAAGAATACCTTCTCACCAACGCATGGGAGAGTTGGAATCAAGGAAGAACATTAAATCTGAT AGATCCTATTCTCAAAAGGGTTGTTTCAAGGAGAGATGTATTGATAAGATGTTTCCACATAGGATTACTATGCGTCCAAGAAAAGGTAGCAGATAGACCA ACCATGGCTTCAGTTATTCTGATGCTTAGTAGCGACTCTTTCGTTCTTCCATTACCATCAAGACCTCCATATTGTATGCACTCCGCTATGGAGGAACAAG AAACATCAAGGCCGGCACAAGATATTCCCTCCTCTAGAGAGCAACCAATATCAACATCAAGTTCATTGACTAATCATGAATCATATCCATCAGATCAATC TGGAATTGGCCATCTCGAATCCTCCATTAAAGAGATTTCAAATCCTTAG
AA sequence Show only first row Show all	>Potri.011G028700.2 pacid=42781864 polypeptide=Potri.011G028700.2.p locus=Potri.011G028700 ID=Potri.011G028700.2.v4.1 annot-version=v4.1 MYSLRLIVLFSFSCVLLSSLSIAQPDFLYQSCRNTENNYTANSTFQKNLDSLLSSLASNTQIDYGYYNFSAGQIGPDQVHAIALCRGDILLNECRGCVSN SGRKILQVCPNQKEAIGIYDFCILRYSNRSSFGVLDEEFIVYTWNTENASHVNLFSQALGNLTSRLRTAAASGTSLLKFATGNQTAGIITIFGLVQCMPD LSAQDCDDCLAGTFQQIRSCCDGQIEGKIGGRIVRGSYYLRFETYPFYRVTAATLAQLPLPPSPEAPPAAAAASGTSLLKFATGNQTAGIITIFGLVQCM PDLSAQDCDDCLAGTFQQIRSCCDGQIEGKIGGRIVRGSCYLRFETYPFYRVTAATLAQLPLPPSPEAPPATENGNTTRKVVIIIVSILIFMAVVVITSI FLYCRRPKQEVKNFNENGGQECVQFRFASIRVATHNFSDDNKLGQGGFGAVYKGLLQDGQAIAVKRLARNSAQGEVEFKNEVLLVARLQHRNLVRLHGFC FEGTEKLLVYEFVPNSSLDQFLFDPSKRSLIDWEIRYQIIVGIARGVLYLHQDSQLRVIHRDLKASNILLDDQMNAKISDFGMAKLFQMDQTQDATSRIV GTLGYMAPEYAMHGCFSAKSDVFSFGVLVLEIITGRQNGSFNSEDEQEYLLTNAWESWNQGRTLNLIDPILKRVVSRRDVLIRCFHIGLLCVQEKVADRP TMASVILMLSSDSFVLPLPSRPPYCMHSAMEEQETSRPAQDIPSSREQPISTSSSLTNHESYPSDQSGIGHLESSIKEISNP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G21410		CRK29	cysteine-rich RLK (RECEPTOR-li...		Potri.011G028700 [exp]	0	1
					Potri.001G022150 [exp]	4.58	0.7134
AT5G38280		PR5K	PR5-like receptor kinase (.1)		Potri.015G122000 [exp]	7.41	0.7410
AT5G11880			Pyridoxal-dependent decarboxyl...		Potri.002G015800 [exp]	19.49	0.5639
AT1G62280		SLAH1	SLAC1 homologue 1 (.1)		Potri.008G084901 [exp]	19.62	0.6896
					Potri.013G012766 [exp]	23.55	0.4950
AT2G18420			Gibberellin-regulated family p...		Potri.002G022500 [exp]	27.71	0.6126
AT2G35615			Eukaryotic aspartyl protease f...		Potri.003G105300 [exp]	32.01	0.6240
AT5G26594		ARR24	response regulator 24 (.1)		Potri.001G055500 [exp]	32.17	0.5873
AT1G08440			Aluminium activated malate tra...		Potri.009G017900 [exp]	34.08	0.6455
AT4G12731			unknown protein		Potri.009G022366 [exp]	38.45	0.6394

Compare expression of checked genes

Potri.011G028700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.