Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21410 537 / 0 CRK29 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) AT4G23180 531 / 0 RLK4, CRK10 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) AT4G05200 523 / 3e-178 CRK25 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) AT4G23140 521 / 1e-177 RLK5, CRK6 cysteine-rich RLK (RECEPTOR-like protein kinase) 6 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 6 (.2) AT4G38830 514 / 9e-175 CRK26 cysteine-rich RLK (RECEPTOR-like protein kinase) 26 (.1) AT4G23160 521 / 1e-170 CRK8 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (.1) AT4G21400 503 / 1e-169 CRK28 cysteine-rich RLK (RECEPTOR-like protein kinase) 28 (.1) AT4G11530 500 / 3e-169 CRK34 cysteine-rich RLK (RECEPTOR-like protein kinase) 34 (.1) AT4G21230 498 / 1e-168 CRK27 cysteine-rich RLK (RECEPTOR-like protein kinase) 27 (.1) AT4G23280 493 / 1e-166 CRK20 cysteine-rich RLK (RECEPTOR-like protein kinase) 20 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G030000 [exp] 1140 / 0 AT4G21410 566 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.011G029700 [exp] 1120 / 0 AT4G21410 578 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.011G028800 [exp] 1119 / 0 AT4G21410 573 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.004G026350 [exp] 800 / 0 AT4G21410 610 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.004G026200 [exp] 607 / 0 AT4G05200 573 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Potri.004G025425 [exp] 600 / 0 AT4G21410 556 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.011G029300 [exp] 597 / 0 AT4G21410 539 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.011G030212 [exp] 597 / 0 AT4G21410 537 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.011G030300 [exp] 586 / 0 AT4G21410 533 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018382 [exp] 654 / 0 AT4G21410 605 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Lus10007632 [exp] 638 / 0 AT4G05200 624 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10018379 [exp] 598 / 0 AT4G23180 566 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10007633 [exp] 583 / 0 AT4G05200 566 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10026629 [exp] 568 / 0 AT4G23180 540 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10007634 [exp] 471 / 1e-158 AT4G23160 417 / 1e-137 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (.1) Lus10015091 [exp] 445 / 7e-140 AT5G54650 556 / 1e-178 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Lus10031579 [exp] 413 / 3e-135 AT4G23160 477 / 8e-154 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (.1) Lus10031582 [exp] 410 / 9e-135 AT4G05200 436 / 6e-145 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10031580 [exp] 385 / 2e-124 AT4G23160 424 / 1e-139 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01657 [poplar] [flax] Stress-antifung Salt stress response/antifungal CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.011G029000.1 pacid=42781921 polypeptide=Potri.011G029000.1.p locus=Potri.011G029000 ID=Potri.011G029000.1.v4.1 annot-version=v4.1 ATGTACGCAAGCACGGTGCCAATGGATTCTTCAAAATTAGTGCTTCTACTTTCGTTCTTTTACATCCTTCTACACCAACCTTCCCTTACCGCTGCTCAGC CGAAGTACTTCGTTAGTTATAACTGTAACTACAACAACACCGGCAACTACACAACTAATAGCACGTACCAAAGAAACCTCAACAGCCTTCTGTCCTCCCT AGCATCCGACACTCAAATTGACTACGGATTTTACAATCTATCCGTTGGCGAATTTCCTGACCGAGTAAATGCAATTGCACTATGCAGAGGAGACGTTGCG GTTGATGTTTGTCGAAGTTGCGTTAATGACTCTACTCGTACGATCTTAGAGGTTTGTCCTAACAAGATGGGGGCATTTGCAGTTTACGCTTTCTGTATGA TACGATACTCAAACACATCTATATTCGGTGTTGTGAATGACCAACCATTTATCTACCAGGCGAATGGACGGAATGTTTTGGATGTAACTCTATTTAATCA GGCACTCCAAACATTATTTGCCAGACTTCGAGACAAAGCTGCATCAGGGAACTCTTTAAAGAAATTCGCAACTGGAAACCAAAGTGCTGGAGTTGAAACA GTATATGCTATTGTTCAATGCACGCCTGACTTATCTGAGGGGCAGTGCTCCAGTTGCCTGCTTGGGGTTTTTCGGATGATTACAAACTGTTGTGGTGGGA ACGTACAAGGGAAGATTGGAGCTAAACTCATAACACCAAGCTGCAATTTGAGGTGGGAGATTGGACCGTTTTTTAATGGTACACTTGAGATATTACCATC ACCTCCACCACCACAAATATCATCACCTACATCTCTTCCTGCACCAGCACAAGGAAAGAAGAGCAACACAGGTCGGATCATTGTCGTTACTGTTGTCCCA GCTGTCGGTGCTGTGATACTCGTCATCTGCATGTGCCTATTCATAAGAACACGAAAGCAAAGGGAAAAGGAAAGGATTGAAACTGGGGACGAAATAGAAA GTGCAGAATCATTGCAATTCGCATTCAGCACCATTCAAGATGCAACAGAGGACTTTTCGGAGAAAAATAAGCTGGGACATGGTGGATTTGGTGCTGTTTA CAAGGGAGCACTTCCTAGCGGACAAGAGATTGCTGTGAAAAGACTTTCCAAGGACTCTGGGCAAGGAGATTTGGAATTCAAAAATGAAGTCTTATTGGTG GCAAGACTCCAGCACCGGAATTTAGTCAGGCTTCTGGGTTTCTGCCTGCAAGGAATTGAAAGGCTTCTTATCTATGAGTTTGTGCCTAATGCGAGCCTTG ATCACTTCATATTTGATCCAATCAAGCGTGTGCATTTGAACTGGGAAAGACGTTACAAGATTATTGGAGGAATTGCTCGAGGGCTCCTTTACCTTCACGA GGATTCTCGACTTCGAATCATTCATCGTGACCTCAAAGCCAGCAACATTTTGTTAGATGAAGAGATGAATCCGAAAATTTCAGATTTTGGCATGGCGAGG TTGTTCGTAGTGGATCAAACTCAAGGCAATACAAGTAGAATCGTGGGAACCTATGGCTATATGGCTCCAGAATATGCAATGCAAGGACACTTCTCGGTCA AGTCAGACGTATTTAGTTTCGGCGTGCTAGTTTTGGAGATTGTGACTGGTAAAAAAAATAGTTTTCGCAATGGAAATGACATAGAGCACCTTTTGAGCCA TGCATGGAGAAACTGGAGGGAAGGGACTGCTCAAGATATGATAGATCCCGTTTTGTGTAGTGGCTCAGCAACAGAAATGATGAGATGCATCCACATTGGG TTACTCTGCGTTCAAGAAAATGTAGCTGAAAGGCCGACAATGGCTTCAGTAGTTCTCATGCTAAGCAGCTCTTCCCTCACATTGCAAATACCTTCTCAGC CTGCATTTTTTATGAACAGCAGCACATATCAATCAGATCTGTCATCCTCAATGGGGCATAATTCAAGGGTGACTGAGTCCTCGCTATCTGAATCTGAAGT TATGATCCCTTTGTCCAAAAATGAGGTTTCAATTACTGAGTTGTATCCTAGATAA
AA sequence Show only first row Show all	>Potri.011G029000.1 pacid=42781921 polypeptide=Potri.011G029000.1.p locus=Potri.011G029000 ID=Potri.011G029000.1.v4.1 annot-version=v4.1 MYASTVPMDSSKLVLLLSFFYILLHQPSLTAAQPKYFVSYNCNYNNTGNYTTNSTYQRNLNSLLSSLASDTQIDYGFYNLSVGEFPDRVNAIALCRGDVA VDVCRSCVNDSTRTILEVCPNKMGAFAVYAFCMIRYSNTSIFGVVNDQPFIYQANGRNVLDVTLFNQALQTLFARLRDKAASGNSLKKFATGNQSAGVET VYAIVQCTPDLSEGQCSSCLLGVFRMITNCCGGNVQGKIGAKLITPSCNLRWEIGPFFNGTLEILPSPPPPQISSPTSLPAPAQGKKSNTGRIIVVTVVP AVGAVILVICMCLFIRTRKQREKERIETGDEIESAESLQFAFSTIQDATEDFSEKNKLGHGGFGAVYKGALPSGQEIAVKRLSKDSGQGDLEFKNEVLLV ARLQHRNLVRLLGFCLQGIERLLIYEFVPNASLDHFIFDPIKRVHLNWERRYKIIGGIARGLLYLHEDSRLRIIHRDLKASNILLDEEMNPKISDFGMAR LFVVDQTQGNTSRIVGTYGYMAPEYAMQGHFSVKSDVFSFGVLVLEIVTGKKNSFRNGNDIEHLLSHAWRNWREGTAQDMIDPVLCSGSATEMMRCIHIG LLCVQENVAERPTMASVVLMLSSSSLTLQIPSQPAFFMNSSTYQSDLSSSMGHNSRVTESSLSESEVMIPLSKNEVSITELYPR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G21410		CRK29	cysteine-rich RLK (RECEPTOR-li...		Potri.011G029000 [exp]	0	1
AT4G21410		CRK29	cysteine-rich RLK (RECEPTOR-li...		Potri.011G029700 [exp]	1.41	0.9863
AT1G78830			Curculin-like (mannose-binding...		Potri.011G066200 [exp]	2.00	0.9534
AT4G21410		CRK29	cysteine-rich RLK (RECEPTOR-li...		Potri.011G030000 [exp]	2.82	0.9713
AT4G21410		CRK29	cysteine-rich RLK (RECEPTOR-li...		Potri.011G028800 [exp]	6.48	0.9607
AT1G77120		ADH1, ATADH, AT...	ARABIDOPSIS THALIANA ALCOHOL D...		Potri.005G060300 [exp]	8.06	0.9515
AT1G11330			S-locus lectin protein kinase ...		Potri.011G038401 [exp]	9.16	0.9441
AT1G52190			Major facilitator superfamily ...		Potri.018G041600 [exp]	10.81	0.9327
AT2G40070			unknown protein		Potri.010G177000 [exp]	11.31	0.9387
AT1G14540			Peroxidase superfamily protein...		Potri.008G022248 [exp]	11.40	0.9279
AT5G54380		THE1	THESEUS1, protein kinase famil...		Potri.005G108300 [exp]	15.96	0.9112

Compare expression of checked genes

Potri.011G029000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.