Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23220 568 / 0 CRK14 cysteine-rich RLK (RECEPTOR-like protein kinase) 14 (.1) AT4G23190 545 / 0 AT-RLK3, CRK11 RECEPTOR LIKE PROTEIN KINASE 3, cysteine-rich RLK (RECEPTOR-like protein kinase) 11 (.1) AT4G11530 533 / 0 CRK34 cysteine-rich RLK (RECEPTOR-like protein kinase) 34 (.1) AT4G11470 530 / 0 CRK31 cysteine-rich RLK (RECEPTOR-like protein kinase) 31 (.1) AT4G11460 521 / 3e-177 CRK30 cysteine-rich RLK (RECEPTOR-like protein kinase) 30 (.1) AT4G23260 514 / 5e-175 CRK18 cysteine-rich RLK (RECEPTOR-like protein kinase) 18 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 18 (.2) AT4G21410 507 / 4e-172 CRK29 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) AT4G23250 515 / 1e-170 RKC1, CRK17, DUF26-21, EMB1290 RECEPTOR-LIKE KINASE THALIANACOL-0GENOMICLIBRARY\(CLONTECH\).THEPOSITIVEPHAGECLONES C-X8-C-X2-C CLASS 1, EMBRYO DEFECTIVE 1290, CYSTEINE-RICH RLK \(RECEPTOR-LIKE PROTEIN KINASE\) 17, kinases;protein kinases (.1) AT4G04490 498 / 8e-169 CRK36 cysteine-rich RLK (RECEPTOR-like protein kinase) 36 (.1) AT4G04540 494 / 6e-167 CRK39 cysteine-rich RLK (RECEPTOR-like protein kinase) 39 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G029100 [exp] 1246 / 0 AT4G23220 570 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 14 (.1) Potri.011G030012 [exp] 1169 / 0 AT4G23220 564 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 14 (.1) Potri.011G029201 [exp] 1161 / 0 AT4G23220 558 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 14 (.1) Potri.011G030200 [exp] 1107 / 0 AT4G23220 558 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 14 (.1) Potri.011G029700 [exp] 602 / 0 AT4G21410 578 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.011G029000 [exp] 599 / 0 AT4G21410 537 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.011G028800 [exp] 599 / 0 AT4G21410 573 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.011G030000 [exp] 598 / 0 AT4G21410 566 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.004G026350 [exp] 596 / 0 AT4G21410 610 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007632 [exp] 558 / 0 AT4G05200 624 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10018382 [exp] 549 / 0 AT4G21410 605 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Lus10007633 [exp] 511 / 1e-173 AT4G05200 566 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10018379 [exp] 504 / 6e-171 AT4G23180 566 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10026629 [exp] 475 / 6e-159 AT4G23180 540 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10031579 [exp] 434 / 2e-143 AT4G23160 477 / 8e-154 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (.1) Lus10015091 [exp] 452 / 7e-143 AT5G54650 556 / 1e-178 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Lus10027146 [exp] 426 / 1e-140 AT4G23180 451 / 1e-150 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10007634 [exp] 418 / 7e-138 AT4G23160 417 / 1e-137 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (.1) Lus10015094 [exp] 390 / 2e-126 AT4G23160 432 / 7e-143 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PF01657 [poplar] [flax] Stress-antifung Salt stress response/antifungal
Representative CDS sequence Show only first row Show all	>Potri.011G029800.1 pacid=42781213 polypeptide=Potri.011G029800.1.p locus=Potri.011G029800 ID=Potri.011G029800.1.v4.1 annot-version=v4.1 ATGGGTTCTAAAACTATCGTCTCTCTTCTTTTTCATGTTATTATCATAAGCATCACTCTTACCGGTGCTGAAGTCTGTTATAACACAGGAAACTTTACAG CTAATAGCACCTATGCAAAAAACCGAGACCTTGTTCTCCGTTCACTAGCTTCCAATGTCACAGCCAATGGGGGTTTCTATAATACTACAATAGGTTTAGG CAATGACACAGTTTATGGTCTTGTGCTCTGTATGGCTTCCCCATCAGCTGAAAATTGTTCCAGCTGCGTCAATTATGCTATTCAAACTCTCATGGCGGGA TGTCCAAACCAAAAAGAAGCAATTTCATGGGGAGGGAATCCACTTCCATGTATTGTACGCTATGCGAATCGTTATTTTTTTGGATCACTTGAGACATCTC CTACTAGCGCTTATTATAATGAGGGTATCCTTGACGCAACTTTTAGACAGTTTGAACAATTTTGGAGTGGTTTGGGAGAAACGGTAAAAAACGCTTCCAC GGGCTCATCCAGGCTTATGCCAGCAGTTGAGACAGCAGACCTACCATCCACTCAAAAAATTTATGTATTTATGCAGTGCACTCCTGATGTATCACCGAGT AATTGCAGTGTTTGCCTACAAGAATCCGTAGATTACTATAAAAGTTGTTGCTACGGGAATCAAGGAGGTCTTGTCCTGAAACCAAACTGTGTTTTTCGGT GGGAGATTTATACCTACTACGACTTATTTCCTCAAGTAACATCTCCACCACCATCTCCATCACCATCACCATCACCATCTCCGTCTCCATCTCCATCATC TCCTCCATTTGTTATTAGTTCTCCTCCACCAACCAATACCACAATCAGGAAAGGGAAGGAGAATACTGCTTCTCGGACAGTTATTGTTACCATCGTCCCT ACAGCTATCTTCTTGGCACTTGTTATCCTCATTCTCACCGTTTTCCATTTTAGGAAGCCAAAGCAAGAGGTCGAAAATTTCGATGAAATTAGTATCGCAA AATGCTTGGAATTCAAATTCGCCACCATCAAACTTGCAACAAACGACTTCTCTGATGATAATAAGCTTGGACAAGGTGGTTTTGGTGCTGTTTACAAGGG TATACTTGCAGACGGACAAGCTATAGCTGTAAAGAGATTATCAAGTAATTCTGGGCAAGGAGAAGTTGAATTTACGAATGAGGTACGGCTACTAGCCAAG CTTGATCACCGGAATCTTGTAAGGTTACTGGGGTTCTGCTTGGAAGGAACAGAAAAGCTTCTAATCTACGAGTTTGTGCCTAATTCAAGCCTCGATCAAT TTATACATGATCCAAACAAACGATTCATCCTGGATTGGGAGAAGCGCTACAAAATCATAGAAGGCATAGCTAGAGGGATTCTATACCTGCATCAAGATTC TCAGCTCCGGATTATTCATCGTGATCTCAAGCCTAGCAACATTCTGTTAGATGGAAAGATGAATGCTAAAATTTCGGATTTTGGAATGGCAAAGTTAATG AAAACTGATCAAACTCATGATGCTGCATCGAGGATCGCTGGAACCTTTGGCTATATTGCTCCAGAGTATGCAAGGCAAAGACAGTTCTCGGTCAAGTCAG ATGTGTTTAGTTTTGGAGTGCTAGTCTTGGAGATTGTGAGCGGTCAAAAACCTAGTTTCCGCGATGGAGATGACATAGAGCACCTTACGAGCCATGCATG GAGACGTTGGAGGGAAGGGACTGCTTTAGATCTTATAGATCCCATTTTGAGGAACGACTCAACAGCTGCAATGATGACATGCATCCACATCGGGTTACTC TGCGTTCAAGAAAATGTAGCTGACAGGCCGACAATGGCTTCAGTTGTTCTGATGCTAAGCAACTCTTCTTTTACTTTACAAATACCTTCTAAACCAGCAT TTTTTATTAGCAGAAGAACATATCGACCAGCTTCTTCATCGACCAGCTATACTTCAAGGATGACGCAATCCCACCTTAAGACTGTCCCACCATCGAAGAA TGAGATTTCAATTACTGAGTTAGATCCTCGATAA
AA sequence Show only first row Show all	>Potri.011G029800.1 pacid=42781213 polypeptide=Potri.011G029800.1.p locus=Potri.011G029800 ID=Potri.011G029800.1.v4.1 annot-version=v4.1 MGSKTIVSLLFHVIIISITLTGAEVCYNTGNFTANSTYAKNRDLVLRSLASNVTANGGFYNTTIGLGNDTVYGLVLCMASPSAENCSSCVNYAIQTLMAG CPNQKEAISWGGNPLPCIVRYANRYFFGSLETSPTSAYYNEGILDATFRQFEQFWSGLGETVKNASTGSSRLMPAVETADLPSTQKIYVFMQCTPDVSPS NCSVCLQESVDYYKSCCYGNQGGLVLKPNCVFRWEIYTYYDLFPQVTSPPPSPSPSPSPSPSPSPSSPPFVISSPPPTNTTIRKGKENTASRTVIVTIVP TAIFLALVILILTVFHFRKPKQEVENFDEISIAKCLEFKFATIKLATNDFSDDNKLGQGGFGAVYKGILADGQAIAVKRLSSNSGQGEVEFTNEVRLLAK LDHRNLVRLLGFCLEGTEKLLIYEFVPNSSLDQFIHDPNKRFILDWEKRYKIIEGIARGILYLHQDSQLRIIHRDLKPSNILLDGKMNAKISDFGMAKLM KTDQTHDAASRIAGTFGYIAPEYARQRQFSVKSDVFSFGVLVLEIVSGQKPSFRDGDDIEHLTSHAWRRWREGTALDLIDPILRNDSTAAMMTCIHIGLL CVQENVADRPTMASVVLMLSNSSFTLQIPSKPAFFISRRTYRPASSSTSYTSRMTQSHLKTVPPSKNEISITELDPR

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G23220		CRK14	cysteine-rich RLK (RECEPTOR-li...		Potri.011G029800 [exp]	0	1
AT4G33050		EDA39	embryo sac development arrest ...		Potri.018G061901 [exp]	4.24	0.9530
AT5G04500			glycosyltransferase family pro...		Potri.010G232700 [exp]	9.38	0.9551
AT5G14420		RGLG2	RING domain ligase2 (.1.2.3.4)		Potri.016G003000 [exp]	10.67	0.9517
AT1G34300			lectin protein kinase family p...		Potri.019G086200 [exp]	11.13	0.9028
AT5G60900		RLK1	receptor-like protein kinase 1...		Potri.003G211366 [exp]	17.23	0.9439
AT3G22930		CML11	calmodulin-like 11 (.1)		Potri.005G215700 [exp]	19.44	0.9472
AT1G07390		AtRLP1	receptor like protein 1 (.1.2....		Potri.018G117900 [exp]	20.32	0.9208
AT1G74170		AtRLP13	receptor like protein 13 (.1)		Potri.005G007900 [exp]	23.64	0.9435
AT1G47670			Transmembrane amino acid trans...		Potri.009G140800 [exp]	24.73	0.9228
AT4G39830			Cupredoxin superfamily protein...		Potri.005G079400 [exp]	24.85	0.9474	Pt-AO1.3

Compare expression of checked genes

Potri.011G029800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.