Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21410 537 / 0 CRK29 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) AT4G38830 526 / 6e-180 CRK26 cysteine-rich RLK (RECEPTOR-like protein kinase) 26 (.1) AT4G05200 503 / 6e-171 CRK25 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) AT4G21400 501 / 1e-169 CRK28 cysteine-rich RLK (RECEPTOR-like protein kinase) 28 (.1) AT4G23180 498 / 6e-169 RLK4, CRK10 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) AT4G23150 486 / 2e-164 CRK7 cysteine-rich RLK (RECEPTOR-like protein kinase) 7 (.1) AT4G21230 483 / 1e-163 CRK27 cysteine-rich RLK (RECEPTOR-like protein kinase) 27 (.1) AT4G23140 484 / 2e-163 RLK5, CRK6 cysteine-rich RLK (RECEPTOR-like protein kinase) 6 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 6 (.2) AT4G23130 480 / 3e-162 RLK6, CRK5 RECEPTOR-LIKE PROTEIN KINASE 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.2) AT4G23160 497 / 7e-162 CRK8 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G029300 [exp] 1203 / 0 AT4G21410 539 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.011G030300 [exp] 1162 / 0 AT4G21410 533 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.011G028600 [exp] 1066 / 0 AT4G21410 554 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.004G025425 [exp] 709 / 0 AT4G21410 556 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.004G026200 [exp] 702 / 0 AT4G05200 573 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Potri.004G026350 [exp] 664 / 0 AT4G21410 610 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.011G028800 [exp] 630 / 0 AT4G21410 573 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.011G029700 [exp] 628 / 0 AT4G21410 578 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.011G030000 [exp] 619 / 0 AT4G21410 566 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018382 [exp] 588 / 0 AT4G21410 605 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Lus10007632 [exp] 565 / 0 AT4G05200 624 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10018379 [exp] 543 / 0 AT4G23180 566 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10007633 [exp] 518 / 1e-176 AT4G05200 566 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10026629 [exp] 512 / 6e-174 AT4G23180 540 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10015091 [exp] 458 / 3e-145 AT5G54650 556 / 1e-178 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Lus10031579 [exp] 429 / 4e-142 AT4G23160 477 / 8e-154 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (.1) Lus10031582 [exp] 415 / 5e-137 AT4G05200 436 / 6e-145 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10038557 [exp] 363 / 8e-115 AT4G27290 803 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10037865 [exp] 363 / 1e-114 AT4G27300 804 / 0.0 S-locus lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PF01657 [poplar] [flax] Stress-antifung Salt stress response/antifungal
Representative CDS sequence Show only first row Show all	>Potri.011G030212.1 pacid=42782403 polypeptide=Potri.011G030212.1.p locus=Potri.011G030212 ID=Potri.011G030212.1.v4.1 annot-version=v4.1 ATGTTATATAAAGACTGTGTAGGAAAGGGCAACTACACCACTAACAGTACTTACCAGGAAAATCTCAATCAACTCCTCACCTCTATCTACACCAACACTG AAATAAACAATGGCTTTTACAATTTTTCCTACGGCCAAGACGCCGACACAGTGTATTCAATTGCACTTTGTAGACCGGATATCAGTCCTGATGTCTGCCG TGTTTGCATAAGAAATGCTAGTGATTTCTTGGTAAGACTCTGTCCAAACTTTGTGGAGGCAATCGGAGGGTTAGATAACTGTATGGTACGCTACACAAAC CGCTCCATATTTAATCGCATGGAGAAAGGACCTTATTTTTGGGTGTATGATGATCGAGTTAATGTCTCTGATGTAGTCGGGTTCAATCAGTCACGGATGA CTTTGTTAGGTAGGCTGAGCGATCAAGCAGCCGCAGGTGATTCTCGTTACAAGTATGCAATGGATCAAATAGATGTCCCGAAGAACTTTCAAAAAATATA TGCACTTGTACAGTGTACTCCTGATTTATCTGCTTCGGAATGCAGGGATTGCCTGTATAATGCTTCAGGACTTATTCCACAGTGTTGTGATGCAAGACAA GGAGGAAGAGTTATTTATCCAAGCTGTAATTTTAGGTATGAAATAGACCGTTTCTATGACCCTCCGACTAATTCAATCCCGCCACCACCAGATTCAACTT CGAATAATACAGTTCCATCACCACCAGCTTCAACTTCACAAGGAAAGAAGGGCAAGAAGAGGAATGTCATCATCATCATTGTCATTGTTCCAATAGCTGT TTCTGTGATTCTTATAGTTTGCGTTTGCATCTTCTTAAGAGCCAGGAAGCAGAAGGAGGAAGAGGAAGTTAAAGATTTATATGAAATGGAAGATGTGGAA TTGTTCCAACTTGATTTTGGCACTGTCAGAGAAGCAACAGGTAACTTCTCCGAGGATAATAAACTCGGACAAGGAGGATTTGGCACCGTGTACAAAGGCA CACTTGCTAATGGACAAGATATAGCTGTAAAAAGGTTGTCTAGGACATCTGGACAAGGAGAGCTAGAATTCAAGAACGAGGTCATGTTAGTTGCCAAGCT TCAGCATCGGAATCTGGTTAGACTCCTGGGTTTCTGCTTCGAGAAAGAAGAAAGGATTCTTGTCTATGAGTTTCTCCCCAACTCGAGCCTCAACAACTTG ATATTTGATCCAGTCAAGCGTGTACTTCTAGATTGGGAAACCCTCTACAAAATCATTGAAGGCATTGCAAGGGGTCTTCTTTATCTACATGAAGACTCTC GACTACGGATTATTCATCGTGATCTCAAAGCTGCTAATATTCTGCTAGATGAGAACATGAATCCAAAAATCTCAGATTTTGGAATGGCAAGAATGTTTGT TATGGATCAAGCTCAAGATAGCACGAGTAGAGTAGTTGGGACCTTCGGGTATATGGCTCCAGAATATGTTATCCGTGGACATTTCTCAGTTAAATCAGAT GTATATAGCTTCGGTGTCTTAGTTTTAGAAATTGTTAGTGGTCGAAAGATTGGTGGCAGCGGCATAGGAGACGATGGAGAGGACCTTCTAACCTATTCAT GGAGAAAATGGAATGAAGGGACACCTTTAGACATGATAGATCCTACCTTGAATATTGGTCCAAGAAGTGAAATTATGAGATGCATCAACATCGGATTAGT TTGTGTTCAGGAAAATGAAGCCCTCAGACCAACTATGGCTCAAGTTTCTATGATGCTTAGTAACTACTCTGTCACTCTCGCAGCACCCTCAAAACCTGCA TTTTTTATGCACGGAGAAACGTCGATTCTGCCATTGATGAATGCTTCAATGTTAACTGAGTCGGATGAATCCAGAACTAAATCTCCCCAGTGGTCTAACA AAGAGGTTTCCATCTCTGAGATAGACCTCGATGACATCCAAAGGTAA
AA sequence Show only first row Show all	>Potri.011G030212.1 pacid=42782403 polypeptide=Potri.011G030212.1.p locus=Potri.011G030212 ID=Potri.011G030212.1.v4.1 annot-version=v4.1 MLYKDCVGKGNYTTNSTYQENLNQLLTSIYTNTEINNGFYNFSYGQDADTVYSIALCRPDISPDVCRVCIRNASDFLVRLCPNFVEAIGGLDNCMVRYTN RSIFNRMEKGPYFWVYDDRVNVSDVVGFNQSRMTLLGRLSDQAAAGDSRYKYAMDQIDVPKNFQKIYALVQCTPDLSASECRDCLYNASGLIPQCCDARQ GGRVIYPSCNFRYEIDRFYDPPTNSIPPPPDSTSNNTVPSPPASTSQGKKGKKRNVIIIIVIVPIAVSVILIVCVCIFLRARKQKEEEEVKDLYEMEDVE LFQLDFGTVREATGNFSEDNKLGQGGFGTVYKGTLANGQDIAVKRLSRTSGQGELEFKNEVMLVAKLQHRNLVRLLGFCFEKEERILVYEFLPNSSLNNL IFDPVKRVLLDWETLYKIIEGIARGLLYLHEDSRLRIIHRDLKAANILLDENMNPKISDFGMARMFVMDQAQDSTSRVVGTFGYMAPEYVIRGHFSVKSD VYSFGVLVLEIVSGRKIGGSGIGDDGEDLLTYSWRKWNEGTPLDMIDPTLNIGPRSEIMRCINIGLVCVQENEALRPTMAQVSMMLSNYSVTLAAPSKPA FFMHGETSILPLMNASMLTESDESRTKSPQWSNKEVSISEIDLDDIQR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G21410		CRK29	cysteine-rich RLK (RECEPTOR-li...		Potri.011G030212 [exp]	0	1
AT4G21410		CRK29	cysteine-rich RLK (RECEPTOR-li...		Potri.011G030300 [exp]	1.00	0.9397
AT4G21410		CRK29	cysteine-rich RLK (RECEPTOR-li...		Potri.011G029300 [exp]	2.00	0.8127
AT5G23960		ATTPS21	terpene synthase 21 (.1.2)		Potri.019G023016 [exp]	5.19	0.7327
					Potri.018G077983 [exp]	12.00	0.6550
AT1G52950			Nucleic acid-binding, OB-fold-...		Potri.001G165480 [exp]	12.24	0.6915
AT5G05800			unknown protein		Potri.010G132850 [exp]	20.14	0.6258
					Potri.007G062642 [exp]	29.32	0.5842
AT4G36600			Late embryogenesis abundant (L...		Potri.007G024000 [exp]	36.94	0.6512
AT4G02550			unknown protein		Potri.019G009855 [exp]	48.47	0.6362
AT5G38280		PR5K	PR5-like receptor kinase (.1)		Potri.015G122000 [exp]	56.42	0.6242

Compare expression of checked genes

Potri.011G030212 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.