Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48540 108 / 5e-28 receptor-like protein kinase-related family protein (.1) AT3G22060 106 / 3e-27 Receptor-like protein kinase-related family protein (.1) AT1G61750 91 / 5e-21 Receptor-like protein kinase-related family protein (.1) AT4G23180 90 / 6e-20 RLK4, CRK10 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) AT3G58310 86 / 2e-19 Domain of unknown function (DUF26) (.1) AT4G38830 85 / 3e-18 CRK26 cysteine-rich RLK (RECEPTOR-like protein kinase) 26 (.1) AT4G20670 82 / 9e-18 Domain of unknown function (DUF26) (.1) AT4G23220 83 / 2e-17 CRK14 cysteine-rich RLK (RECEPTOR-like protein kinase) 14 (.1) AT4G23280 82 / 2e-17 CRK20 cysteine-rich RLK (RECEPTOR-like protein kinase) 20 (.1) AT4G21230 82 / 2e-17 CRK27 cysteine-rich RLK (RECEPTOR-like protein kinase) 27 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G030800 [exp] 451 / 1e-161 AT3G22060 105 / 5e-27 Receptor-like protein kinase-related family protein (.1) Potri.004G032000 [exp] 416 / 4e-148 AT3G22060 110 / 4e-29 Receptor-like protein kinase-related family protein (.1) Potri.011G029500 [exp] 337 / 4e-118 AT5G48540 0 / 1 receptor-like protein kinase-related family protein (.1) Potri.007G120300 [exp] 123 / 1e-33 AT3G22060 194 / 1e-61 Receptor-like protein kinase-related family protein (.1) Potri.007G120501 [exp] 122 / 2e-33 AT3G22060 271 / 4e-92 Receptor-like protein kinase-related family protein (.1) Potri.007G120600 [exp] 122 / 4e-33 AT3G22060 214 / 2e-69 Receptor-like protein kinase-related family protein (.1) Potri.007G120500 [exp] 119 / 3e-32 AT3G22060 278 / 6e-95 Receptor-like protein kinase-related family protein (.1) Potri.017G040450 [exp] 117 / 1e-31 AT3G22060 274 / 4e-93 Receptor-like protein kinase-related family protein (.1) Potri.007G120401 [exp] 116 / 4e-31 AT3G22060 271 / 3e-92 Receptor-like protein kinase-related family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006752 [exp] 236 / 7e-77 AT5G48540 100 / 1e-24 receptor-like protein kinase-related family protein (.1) Lus10007632 [exp] 119 / 6e-30 AT4G05200 624 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10018380 [exp] 117 / 9e-30 AT4G05200 324 / 2e-104 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10026629 [exp] 111 / 4e-27 AT4G23180 540 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10038227 [exp] 102 / 1e-25 AT5G48540 261 / 1e-87 receptor-like protein kinase-related family protein (.1) Lus10027146 [exp] 103 / 2e-24 AT4G23180 451 / 1e-150 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10025875 [exp] 97 / 1e-23 AT5G48540 261 / 2e-87 receptor-like protein kinase-related family protein (.1) Lus10018382 [exp] 100 / 2e-23 AT4G21410 605 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Lus10027145 [exp] 94 / 3e-22 AT3G22060 253 / 8e-85 Receptor-like protein kinase-related family protein (.1) Lus10031582 [exp] 96 / 5e-22 AT4G05200 436 / 6e-145 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01657 [poplar] [flax] Stress-antifung Salt stress response/antifungal
Representative CDS sequence Show only first row Show all	>Potri.011G030500.1 pacid=42780842 polypeptide=Potri.011G030500.1.p locus=Potri.011G030500 ID=Potri.011G030500.1.v4.1 annot-version=v4.1 ATGAACATAAATACAGAACATATCCCATTCATGACCTCTGCCCTTCGTTTCCCTTGGACTCAAAGTATGGAATTGTTAATATTCATTATATTTTCAACTT TTCTGCTGTTATCTAGCCCTTGCCATGCTGACAGTAATTCCGATCCCGGTTCGCAATGTACTGAAGTTGATAATGCTACCAATAGCAGTGAATACCAAGC CAATCTGAGCGAGCTGCAGAATTCACTTGTTGCTAATGCGCCTATCCAAAATGGCTTCTACACGACCGCAGCAGGTAAAGGTGCTAACAAGATTTATGGC CTTACACAATGCAGAGGTGATATTTCTGCCACAGACTGTGCAGCCTGCATCAAGAATGTTACCGTAGTACAAGGCTGCTCAAACAGTAAAAATGCGACGC GTTGGTTTAAGTGGTGTTTCCTAAGGTATTCAGACCGGAGCTTTTTCGGTGAATTGGATCAATCAGGAATGGTGGCAACTTACAATGACACCACTTTTGA AGATGCAAAAGTGGTTTCTGAAGGACTTAACTTCACAAAAACGCTTGCTTCTACAACTCCTAACCAGCCTTCGATGTTCTATACCGCAGTATTGGATGTT GGACAGAGTGGGAAGAGGTATGGCATGGCTCAATGCACTAGAGATCTCAGCAAGAGTGATTGTGGCAAGTGCTTGGATTTCCAATTGGCGACATATTTAA ATATTATTGGAAATAAGAGAAGTTGGGATATTTATGGATCTAGTTGTAGCATGTGGTACTATGACTACCAGTTCTACTTCAACTTTTCAACACCTGCAGC AAAGGGAGGTTCCACAAGATCCTCACCACATCGAGTTGCAATTGGCATGGCCTTTCCAGTGCTAGTGTTTCTGTTAGTTCTTTAA
AA sequence Show only first row Show all	>Potri.011G030500.1 pacid=42780842 polypeptide=Potri.011G030500.1.p locus=Potri.011G030500 ID=Potri.011G030500.1.v4.1 annot-version=v4.1 MNINTEHIPFMTSALRFPWTQSMELLIFIIFSTFLLLSSPCHADSNSDPGSQCTEVDNATNSSEYQANLSELQNSLVANAPIQNGFYTTAAGKGANKIYG LTQCRGDISATDCAACIKNVTVVQGCSNSKNATRWFKWCFLRYSDRSFFGELDQSGMVATYNDTTFEDAKVVSEGLNFTKTLASTTPNQPSMFYTAVLDV GQSGKRYGMAQCTRDLSKSDCGKCLDFQLATYLNIIGNKRSWDIYGSSCSMWYYDYQFYFNFSTPAAKGGSTRSSPHRVAIGMAFPVLVFLLVL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G48540			receptor-like protein kinase-r...		Potri.011G030500 [exp]	0	1
AT5G48540			receptor-like protein kinase-r...		Potri.011G029500 [exp]	1.00	0.8741
					Potri.006G260875 [exp]	4.24	0.8242
AT1G73260		ATKTI1	ARABIDOPSIS THALIANA KUNITZ TR...		Potri.007G111500 [exp]	16.52	0.7750
AT4G24040		TREHALASE1, ATT...	trehalase 1 (.1)		Potri.003G143900 [exp]	17.20	0.7216
AT4G31500		SUR2, RNT1, RED...	SUPERROOT 2, RUNT 1, RED ELONG...		Potri.002G025800 [exp]	21.07	0.8107	CYP83F2
AT4G39955			alpha/beta-Hydrolases superfam...		Potri.005G074066 [exp]	21.49	0.7712
					Potri.003G026650 [exp]	23.08	0.7596
AT4G31500		SUR2, RNT1, RED...	SUPERROOT 2, RUNT 1, RED ELONG...		Potri.002G026500 [exp]	25.29	0.8031
AT4G31500		SUR2, RNT1, RED...	SUPERROOT 2, RUNT 1, RED ELONG...		Potri.002G025500 [exp]	27.38	0.7897
AT1G17180		ATGSTU25	glutathione S-transferase TAU ...		Potri.019G130433 [exp]	33.67	0.7535

Compare expression of checked genes

Potri.011G030500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.