Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G05200 477 / 7e-160 CRK25 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) AT4G23200 417 / 5e-137 CRK12 cysteine-rich RLK (RECEPTOR-like protein kinase) 12 (.1) AT4G11900 404 / 1e-129 S-locus lectin protein kinase family protein (.1) AT4G23230 389 / 1e-127 CRK15 cysteine-rich RLK (RECEPTOR-like protein kinase) 15 (.1) AT4G23180 393 / 2e-127 RLK4, CRK10 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) AT4G00970 385 / 2e-124 CRK41 cysteine-rich RLK (RECEPTOR-like protein kinase) 41 (.1) AT4G23140 385 / 3e-124 RLK5, CRK6 cysteine-rich RLK (RECEPTOR-like protein kinase) 6 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 6 (.2) AT4G04510 381 / 4e-123 CRK38 cysteine-rich RLK (RECEPTOR-like protein kinase) 38 (.1) AT4G03230 390 / 2e-122 S-locus lectin protein kinase family protein (.1) AT4G11530 378 / 1e-121 CRK34 cysteine-rich RLK (RECEPTOR-like protein kinase) 34 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G023550 [exp] 505 / 8e-171 AT4G05200 541 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Potri.011G028400 [exp] 489 / 2e-164 AT4G05200 709 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Potri.004G024052 [exp] 479 / 1e-160 AT4G23180 545 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.011G027800 [exp] 475 / 3e-159 AT4G23180 516 / 9e-176 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G023700 [exp] 474 / 7e-159 AT4G05200 474 / 3e-159 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Potri.004G023788 [exp] 474 / 8e-159 AT4G23180 559 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G024228 [exp] 473 / 2e-158 AT4G23180 551 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.011G028100 [exp] 469 / 7e-157 AT4G05200 519 / 8e-177 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Potri.004G024101 [exp] 468 / 4e-156 AT4G23180 531 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018382 [exp] 449 / 5e-149 AT4G21410 605 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Lus10015091 [exp] 419 / 5e-130 AT5G54650 556 / 1e-178 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Lus10007633 [exp] 399 / 1e-129 AT4G05200 566 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10033752 [exp] 385 / 2e-128 AT4G03230 497 / 6e-169 S-locus lectin protein kinase family protein (.1) Lus10018408 [exp] 402 / 9e-128 AT4G21390 936 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10037865 [exp] 395 / 2e-126 AT4G27300 804 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10020083 [exp] 373 / 5e-123 AT4G21390 427 / 6e-143 S-locus lectin protein kinase family protein (.1) Lus10038552 [exp] 386 / 1e-122 AT4G27290 879 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10014812 [exp] 386 / 2e-122 AT4G27290 749 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10006742 [exp] 392 / 3e-122 AT4G21390 800 / 0.0 S-locus lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01657 [poplar] [flax] Stress-antifung Salt stress response/antifungal CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.011G030650.1 pacid=42780680 polypeptide=Potri.011G030650.1.p locus=Potri.011G030650 ID=Potri.011G030650.1.v4.1 annot-version=v4.1 ATGGCCCAATCTAAAGAAAACAAAAAAATCTTGTCTTTACTTCATCAAATACATTCCATAACCATATCGATCCTCGCCTCACCATTTTCTCTCAAGTTAA TCCTGATGAAAATTATGTTTCTTCTACTCAATCCCACATCCTTTCTTTCAGTTCTGATCACAATTATTACCCTTATAAGCTCAATTGCTAGCCAACCAGC TAACACTTACCCCTTCTGTTCAGATCCTCAAAATATCACAGAAAATGCTAGTTACACTTCAAACCTTAGCGCCCTATTGAGTTCTTTATCCTCCAAGGCC TCCCTGAACAGCTTCTATGCAGACAGTTCTAATGGTATTTACAGTCTATACCTTTGCAGGGGTGATGTTTCAAGCAATACCTGTCAAACCTGCATTAACA ATGCTACTCGAGAAATCCAACGGCGATGTGCTTCTAATGGAACTGCAATCATTTGGTACGATGATCAGTGCATGCTACGTTACTCGAATAAAAACTTTCA TGGAGTTTATCAGACTTATCCAAGATTGTTCATGTGGAATAACGAGAATACTACATCACCAGATGAACAGAATTTTGGTGCGCTCAGTTTGATATACACG CTGATAGAAGATATTGTTCCATATACAGATATGATGTTCGGGACTAATCAATCAGCGAGTCATGATGGGTCTCAAAAAAGATATGCTTTGGCGCAGTGTA GTAGAGATATAAATAGTGGTGATTGTAGTTCTTGTTTGGGAACCTTAAGGGATGCTGTGACACAGTGTTGCCAAGCTAAGAGAGGTTGGCGTATTTTCGC CCCAAGTTGTAGTTTAAGGTATGAGGAATATCCATTCTATCAGCTGCCATCAGTGCCATCAACGCCGGTACCGGTTCCTTCTGCCCAAGTGCCAGAGCCA GTGCCCGGAGGAAATGGAGGGAACAATACAACTATGATTGTGATTGCTACTGTTGTATCATCATTAGCTGTAGCTGTTGCTCTCTTGCTGTTCTGGTATT TTTCATGCTGGAAAGGGCCAAGACGAACAGAGGAGGAAAGAAGCCAAGAAATTCTATTACGAGGAAATTCAAATCACTGCTATCTGAATGAAGGAGAATT GCCTATTACCGGTTATGACAATGGTGAACAAATGCATTACTTCAATTTGACGACCATAAGGTTAGCTACAAACAATTTCTCTGACGAAAATAAGCTTGGA GAAGGAGGTTTTGGCCCAGTTTACAAGGGAATTCTTCCTGCTGGAGAAGAAATAGCAGTCAAAAGGCTTTCCATGGTATCAAAACAAGGTCTTGAAGAAT TTAGAAATGAAGTGATGGTCATCGCTAAACTTCAGCACAAAAATCTTGTAAGGCTGTTGGGATATTGCTTGGAAGGAGATGAAAAGGTTCTTGTCTATGA GTACCTGGCAAACACAAGCCTTGATGCCTTCCTGTTTGATCCAGAGAAAAGTAGGGAACTCGACTGGCCAAAGCGTGCAAATATTATATCAGGAACAGCA AGGGGCCTGCAGTATCTACATGAAGACTCTAGACTCAAAATCGTACACCGTGATATGAAAGCAAGCAATATCTTGTTGGATGATCAGATGAACCCAAAGA TATCAGACTTTGGCACTGCAAGAATTTTCGGAGGGAATCAACTTGAGGACAACACTAACAAAGTTGTTGGCACATTTGGATACATGGCACCAGAATATGC ACTGGAGGGAATAATTTCAACAAAGTCAGATGTTTACAGCTTTGGAATCCTGTTGTTAGAAATCATTACTGGTAAAAAGAACAGAGGTTTCTACAGCCAA TATCAAGCTCAAAGCCTCCTCTTACATGCCTGGCAGCTGTGGAATGAAGGCAGAGGAAAGGAGTTGATAGACAGAAATATAATCGACTCTTGTTCAGTAA GTGAGGCTTTGAGATGGATCCATATTGCATTACTTTGTGTTCAAGATGATCCTGCACGTAGGCCAACCATGTCATTAGTTGTTCTCATGCTTGGAAGTAA TGCTGTAAACCTTCCCCAACCATCAACAGGTCCAAAATCTCTGGTTAAATTTACTTCAATCCTGTCTCATCAGTCTTCAGCATCTGTGTCAGGATCAAGT TTCCTTGCATCTGATCAATCTACAGCTAGTGCTTCTTGGTAG
AA sequence Show only first row Show all	>Potri.011G030650.1 pacid=42780680 polypeptide=Potri.011G030650.1.p locus=Potri.011G030650 ID=Potri.011G030650.1.v4.1 annot-version=v4.1 MAQSKENKKILSLLHQIHSITISILASPFSLKLILMKIMFLLLNPTSFLSVLITIITLISSIASQPANTYPFCSDPQNITENASYTSNLSALLSSLSSKA SLNSFYADSSNGIYSLYLCRGDVSSNTCQTCINNATREIQRRCASNGTAIIWYDDQCMLRYSNKNFHGVYQTYPRLFMWNNENTTSPDEQNFGALSLIYT LIEDIVPYTDMMFGTNQSASHDGSQKRYALAQCSRDINSGDCSSCLGTLRDAVTQCCQAKRGWRIFAPSCSLRYEEYPFYQLPSVPSTPVPVPSAQVPEP VPGGNGGNNTTMIVIATVVSSLAVAVALLLFWYFSCWKGPRRTEEERSQEILLRGNSNHCYLNEGELPITGYDNGEQMHYFNLTTIRLATNNFSDENKLG EGGFGPVYKGILPAGEEIAVKRLSMVSKQGLEEFRNEVMVIAKLQHKNLVRLLGYCLEGDEKVLVYEYLANTSLDAFLFDPEKSRELDWPKRANIISGTA RGLQYLHEDSRLKIVHRDMKASNILLDDQMNPKISDFGTARIFGGNQLEDNTNKVVGTFGYMAPEYALEGIISTKSDVYSFGILLLEIITGKKNRGFYSQ YQAQSLLLHAWQLWNEGRGKELIDRNIIDSCSVSEALRWIHIALLCVQDDPARRPTMSLVVLMLGSNAVNLPQPSTGPKSLVKFTSILSHQSSASVSGSS FLASDQSTASASW

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G05200		CRK25	cysteine-rich RLK (RECEPTOR-li...		Potri.011G030650 [exp]	0	1
AT4G21895			DNA binding (.1)		Potri.011G001901 [exp]	2.44	0.9284
AT3G22060			Receptor-like protein kinase-r...		Potri.007G120601 [exp]	7.93	0.8911
AT3G22060			Receptor-like protein kinase-r...		Potri.007G120600 [exp]	8.48	0.8869
AT3G22060			Receptor-like protein kinase-r...		Potri.007G120300 [exp]	9.69	0.9147
AT5G05340			Peroxidase superfamily protein...		Potri.013G154400 [exp]	10.58	0.8800	Pt-PRX1.9
AT4G26200		ACS7, ATACS7	1-amino-cyclopropane-1-carboxy...		Potri.018G067000 [exp]	15.16	0.8865	Pt-ACS3.2
AT4G20820			FAD-binding Berberine family p...		Potri.011G162968 [exp]	16.79	0.8835
AT3G09390		ATMT-K, ATMT-1,...	ARABIDOPSIS THALIANA METALLOTH...		Potri.013G131200 [exp]	26.98	0.8811
AT3G46540			ENTH/VHS family protein (.1)		Potri.008G055600 [exp]	27.45	0.8727
AT1G56320			unknown protein		Potri.005G019200 [exp]	29.39	0.8616

Compare expression of checked genes

Potri.011G030650 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.