Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G61740 414 / 2e-141 Sulfite exporter TauE/SafE family protein (.1) AT4G21250 383 / 1e-129 Sulfite exporter TauE/SafE family protein (.1) AT1G11540 361 / 3e-122 Sulfite exporter TauE/SafE family protein (.1) AT4G21260 267 / 4e-85 Sulfite exporter TauE/SafE family protein (.1) AT2G25737 130 / 4e-33 Sulfite exporter TauE/SafE family protein (.1) AT2G36630 102 / 4e-23 Sulfite exporter TauE/SafE family protein (.1) AT1G54470 42 / 0.0008 RPP27 resistance to Peronospora parasitica 27, RNI-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G242100 [exp] 137 / 3e-35 AT2G25737 568 / 0.0 Sulfite exporter TauE/SafE family protein (.1) Potri.018G037400 [exp] 131 / 3e-33 AT2G25737 535 / 0.0 Sulfite exporter TauE/SafE family protein (.1) Potri.001G183300 [exp] 123 / 2e-30 AT2G25737 381 / 2e-128 Sulfite exporter TauE/SafE family protein (.1) Potri.003G053000 [exp] 115 / 8e-28 AT2G25737 501 / 2e-175 Sulfite exporter TauE/SafE family protein (.1) Potri.001G182700 [exp] 110 / 4e-26 AT2G25737 428 / 6e-147 Sulfite exporter TauE/SafE family protein (.1) Potri.007G026800 [exp] 108 / 3e-25 AT2G25737 434 / 2e-149 Sulfite exporter TauE/SafE family protein (.1) Potri.018G037500 [exp] 107 / 6e-25 AT2G25737 529 / 0.0 Sulfite exporter TauE/SafE family protein (.1) Potri.001G183400 [exp] 104 / 4e-24 AT2G25737 418 / 5e-143 Sulfite exporter TauE/SafE family protein (.1) Potri.005G124200 [exp] 100 / 2e-22 AT2G25737 453 / 1e-156 Sulfite exporter TauE/SafE family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020068 [exp] 346 / 3e-115 AT1G61740 371 / 2e-125 Sulfite exporter TauE/SafE family protein (.1) Lus10011682 [exp] 116 / 5e-28 AT2G25737 632 / 0.0 Sulfite exporter TauE/SafE family protein (.1) Lus10026025 [exp] 108 / 5e-25 AT2G25737 533 / 0.0 Sulfite exporter TauE/SafE family protein (.1) Lus10006751 [exp] 105 / 2e-24 AT4G05180 271 / 7e-89 photosystem II subunit Q-2 (.1) Lus10014316 [exp] 103 / 2e-23 AT2G25737 536 / 0.0 Sulfite exporter TauE/SafE family protein (.1) Lus10020733 [exp] 94 / 2e-20 AT2G36630 611 / 0.0 Sulfite exporter TauE/SafE family protein (.1) Lus10011683 [exp] 94 / 2e-20 AT2G25737 444 / 9e-154 Sulfite exporter TauE/SafE family protein (.1) Lus10029813 [exp] 93 / 3e-20 AT2G36630 612 / 0.0 Sulfite exporter TauE/SafE family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0292 [poplar] [flax] LysE PF01925 [poplar] [flax] TauE Sulfite exporter TauE/SafE
Representative CDS sequence Show only first row Show all	>Potri.011G030900.3 pacid=42780695 polypeptide=Potri.011G030900.3.p locus=Potri.011G030900 ID=Potri.011G030900.3.v4.1 annot-version=v4.1 ATGAAGGCCAACACCATCCTGACATGGCTAGCTGTCTCCCTCGCCATTTTGATCGCTCTTAGCCAGTCCAGAGCAGAAGAAACACAACCCCTTTCAAACA ATCTGAAAATCGATCTTTTTCTTGACAAAATTGGTAAGTGGAGTCATCATCAGATACAGTCTCAAGAAACAGGATTGAAACTAGCACCCTCTATGGTGAT AGCAGGAGTTTTATGTTTCATAGCTGCCTCTGTATCTAGTGCAGGTGGCATTGGTGGAGGGGGGTTGTATATTCCAATACTAACTATAGTGGCAAGTCTA GACCTGAAAACAGCCTCAAGTTTCTCAGCTTTTATGGTCACAGGAGGGTCTGTTGCTAATGTCATGTGTAACATGTTTACAAGAAGTGCGAAGTTTGGTG GTCAGACCTTGGTAGACTATGATATTGCAATTCTGTCTGAACCGTGCATGTTGTTAGGAGTTAGTGTTGGGGTTATTTGTAATCTTGTTTTCCCAGAGTG GCTTGTCACAATTTTGTTCGCTGTTTTTCTTGCTTGTTCTACCTTTAAGACTTGTCAGAATGGTGTTTTTCATTGGAAGTTGGAATCGGAAGAAGTGAAT AGAAATGAAAGTGGGAATTTGGAAAATGGGTTGGTTGAATATGAGACTAGCACTAAGGAAAGTGAAGAGGTGATAAGCAGTGTCAAGGAGCCTCTTTTGG GTGTAGAATTAACTAGTTCCGTATTGAGGTTTCCATGGATGAAGTTGGGGATATTATTCATCATCTGGTTCTCCTTCTCCATCCTCTATCTTCTTCGAGG CAATCGGTACGGAGAGGGTATTATACCAATGGAGTCCTGTGGATTTGGATATTGGGTTGTCTCATCACTTCAGATTCCTCTTGCAATAATGTTCACAGCA TGGATACTGTACAGAAAAGAGAGCTGCCAACATCAAACTATAAACCAGCAGGGCATGGAAGACCTAACAGGAGGTGGAACATCAAATAAGCTGATTTTCC CAGTCATGGCATTATTAGCAGGGATGTTGGGAGGAGTTTTTGGGATTGGAGGTGGAATGCTTATCAGCCCACTTCTGCTTCATGTTGGAATAGCACCTGA GATAACTGCAGCAACTTGCTCGTTCATGGTTTTCTTTTCATCTTCAATGTCGGCATTACAGTATCTATTGTTGGGCATGGAACATGTTGATACCGCCATC ATCCTTTCCGTCATTTGTTTTGTTGCGTCACTTCTTGGGTTGCTGGTGGTACAGAGGGCCATAGTAAAATATGGCAGGGCTTCCATGATTGTATTCTCAG TTAGTACAGTAATGGCTTTGAGTACTGTTCTGATGACCAGCTTTGGAGCTCTTAATGTTTGGAGGGATTATAATTCTGGGAGAAACATGGGGTTCAAACT GCCCTGTTGA
AA sequence Show only first row Show all	>Potri.011G030900.3 pacid=42780695 polypeptide=Potri.011G030900.3.p locus=Potri.011G030900 ID=Potri.011G030900.3.v4.1 annot-version=v4.1 MKANTILTWLAVSLAILIALSQSRAEETQPLSNNLKIDLFLDKIGKWSHHQIQSQETGLKLAPSMVIAGVLCFIAASVSSAGGIGGGGLYIPILTIVASL DLKTASSFSAFMVTGGSVANVMCNMFTRSAKFGGQTLVDYDIAILSEPCMLLGVSVGVICNLVFPEWLVTILFAVFLACSTFKTCQNGVFHWKLESEEVN RNESGNLENGLVEYETSTKESEEVISSVKEPLLGVELTSSVLRFPWMKLGILFIIWFSFSILYLLRGNRYGEGIIPMESCGFGYWVVSSLQIPLAIMFTA WILYRKESCQHQTINQQGMEDLTGGGTSNKLIFPVMALLAGMLGGVFGIGGGMLISPLLLHVGIAPEITAATCSFMVFFSSSMSALQYLLLGMEHVDTAI ILSVICFVASLLGLLVVQRAIVKYGRASMIVFSVSTVMALSTVLMTSFGALNVWRDYNSGRNMGFKLPC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G61740			Sulfite exporter TauE/SafE fam...		Potri.011G030900 [exp]	0	1
AT5G57685		LSB1, ATGDU3	LESS SUSCEPTIBLE TO BSCTV 1, A...		Potri.017G107200 [exp]	2.00	0.8336
AT5G51060		ATRBOHC, RHD2	ROOT HAIR DEFECTIVE 2, A. THAL...		Potri.015G109800 [exp]	2.23	0.8554	RHD2.2
AT4G35790		ATPLDDELTA	ARABIDOPSIS THALIANA PHOSPHOLI...		Potri.005G246000 [exp]	2.23	0.8222
AT5G42200			RING/U-box superfamily protein...		Potri.005G244500 [exp]	9.79	0.7542
AT1G11580		ATPMEPCRA	methylesterase PCR A (.1)		Potri.011G025400 [exp]	10.24	0.8320
					Potri.014G077950 [exp]	10.48	0.7824
AT2G38280		ATAMPD, FAC1	EMBRYONIC FACTOR1, ADENOSINE 5...		Potri.016G119300 [exp]	12.00	0.7409
AT3G30380			alpha/beta-Hydrolases superfam...		Potri.017G102500 [exp]	12.16	0.8276
AT5G47610			RING/U-box superfamily protein...		Potri.001G453800 [exp]	12.32	0.7656
AT2G39130			Transmembrane amino acid trans...		Potri.010G226000 [exp]	13.26	0.7696

Compare expression of checked genes

Potri.011G030900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.