Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	ATK1.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21270 1109 / 0 KATAP, ATK1 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA A PROTEIN, KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA A, kinesin 1 (.1) AT4G05190 1075 / 0 ATK5 kinesin 5 (.1) AT5G54670 885 / 0 KATC, ATK3 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA C, kinesin 3 (.1) AT4G27180 869 / 0 KATB, ATK2 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA B, kinesin 2 (.1) AT5G27550 317 / 2e-96 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G72250 318 / 1e-93 Di-glucose binding protein with Kinesin motor domain (.1.2) AT2G22610 302 / 1e-88 Di-glucose binding protein with Kinesin motor domain (.1.2) AT1G73860 301 / 2e-88 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G27000 300 / 3e-88 KATD, ATK4 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1) AT1G63640 300 / 9e-88 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G031600 [exp] 1531 / 0 AT4G21270 1076 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA A PROTEIN, KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA A, kinesin 1 (.1) Potri.001G416300 [exp] 954 / 0 AT5G54670 1090 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA C, kinesin 3 (.1) Potri.011G131900 [exp] 951 / 0 AT5G54670 1058 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA C, kinesin 3 (.1) Potri.011G140000 [exp] 317 / 3e-93 AT1G72250 1201 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2) Potri.013G020700 [exp] 304 / 2e-91 AT5G27550 862 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.001G436200 [exp] 308 / 3e-90 AT1G72250 1248 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2) Potri.005G030271 [exp] 296 / 1e-88 AT5G27550 865 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.001G104000 [exp] 291 / 1e-84 AT1G63640 1102 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) Potri.002G110600 [exp] 290 / 3e-84 AT2G22610 1057 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018384 [exp] 1172 / 0 AT4G21270 989 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA A PROTEIN, KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA A, kinesin 1 (.1) Lus10007629 [exp] 1160 / 0 AT4G21270 975 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA A PROTEIN, KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA A, kinesin 1 (.1) Lus10035838 [exp] 923 / 0 AT5G54670 1076 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA C, kinesin 3 (.1) Lus10036621 [exp] 921 / 0 AT5G54670 1075 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA C, kinesin 3 (.1) Lus10035954 [exp] 300 / 6e-88 AT2G22610 1302 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2) Lus10005582 [exp] 300 / 2e-87 AT1G72250 1109 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2) Lus10013714 [exp] 299 / 4e-87 AT1G72250 1098 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2) Lus10029865 [exp] 294 / 6e-86 AT5G27000 1014 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1) Lus10032264 [exp] 293 / 5e-85 AT1G63640 991 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) Lus10004487 [exp] 286 / 2e-84 AT5G27550 881 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00225 [poplar] [flax] Kinesin Kinesin motor domain
Representative CDS sequence Show only first row Show all	>Potri.011G031200.1 pacid=42781755 polypeptide=Potri.011G031200.1.p locus=Potri.011G031200 ID=Potri.011G031200.1.v4.1 annot-version=v4.1 ATGGCTTCTAGGAACCAGAATCGGCCTCCTCGTAGTCCTTCTTCTAAGAAGGAAGGGGTGGAAGGTATTCCTTTAGATAAGCGGAGGAGGATTGCGATGG GAAGAACAGGAGGAGCTACGAATGTGGAGCGCAAGCCATTTGGTTCTGTTAACAGGAAGCTGGATGTTACTGCAACTAGTGATGTGGGGAGCTGTGCTGA GGGTTCGGATTGTGGCAATGTTGAGTTTACCAAGGAAGAAGTTGATGCGCTGGTCAATGAGAGATTGAAGATGAAAAAGTTTGATCACAAGGGGAATTTG GAATTAGTGAGTGAACTTAATGCTAGGCTTAAGGTTTGTATCAAATGGTTCCAGAAGAGAGATGAATCCCATGTCGAAGAGGAAGGAAAGCTTCAAATTG CTTTAGACGCTTTGGAGAAAAAGTGTACCGAAACTGAGGCAGAGATGAAAAACAAGGAGGAGAGATTTAGTGCAACTATTAGTGAGCTGAGGCAAGATAA TGCTTGTTTACAAGAGAGACTTTCAAAAGAAGAATCAGAAAAGCTGGATGCAATCGCTTGTCATAGAAAGGAAAATGAAGCACGAATTGCATTAGAAGCT TTGCAGGCTTCTCTATCAAAAGATCTTGAGAAAGCCCAACAAGATATTTTAGCTGCCAATCAAAGGGCTTCCTCAGTTGATGATATGTACAAGCGATTAC AAGAGTACAACTTGAGTTTACAACAGTACAATAGCAAGCTGCATGCTGAACTTGAAGTTGCTCGCGAGTCTCTAAAACGTGTAGAAAAGGAGAAGTCTAC TATAGTCGAGAACCACAGTACATTAAGGGGTCGCTACAGTTCATTGCAGGATCAATTAAATTTAGCCAGGACTGCTCAAGATGAGGCTTTGAATCAGAAG GACACATTAGCAAATGAAGTGAAATGTCTCCGAGGAGAGTTGCAGCAGGTTAGAGAGGATCGTGATCGCCAAGTGGCTCAAGTGCAGGCTTTAACTTCTG ATGTGGTGAAGTATAAAGAAAGTACTGGTGAATCCTGTGCAAAACTAGAATATCTGATGGAAAAAACAAAATCCTTGGAGGAGACATGTTCTTCTCAGAG GGAACAAATATGCTTGTTGGAGCATCAGCTCACTGCTGCAAATGAAATGCTGAAGATGTCTGATTTATCTTCTATAGAAACAAGGACAGAATTTGAAAAG CAAAAGAGAACTGTACGTGAATTACAAGAGCGCTTAGCAGAGACAGAAAATCAACTAGTTGAAGGAGAGAAATTGAGGAAAAAATTGCACAATACCATTT TGGAGCTAAAGGGGAATATTCGAGTATTTTGCAGAGTGCGTCCCGTGTTGCCAGATGATGGTGCTGGGTCTGAGCCACCAGTCATTTCTTATCCTACCTC AACAGAAGCTCTTGGCAGAGGCATCGATGTAATACAAAGTGCAGGACAGAAATATCCTTTTACATTTGACAAGGTGTTCAATCATGATGCTTCTCAGCAA GAAGTTTTTGTTGAAATATCACAGCTTGTACAGAGTGCCCTTGATGGCTATAAGGTATGCATCTTTGCTTATGGTCAAACAGGTTCGGGCAAAACCTATA CTATGATGGGCAGGCCAGAAGCTCCAGAGCAGAAGGGGTTGATACCACGCTCTTTAGAACAAATATTTCAAACTAGCCAGTCCCTTATGGCACAGGGTTG GAAGTACAAAATGCAGGCTTCAATGCTGGAAATATACAATGAAACCATTCGTGATTTGTTGTCGACAAATAAATCGAGCAGTACAGAAAATGGAGCTCCA GGAAAGCAGTATACCATCAAACACGATGCAAATGGAAACACCTATGTCACTGATCTTACAATTGTGGACGTTTGTAGAATGGAAGAGATTTCCTCTCTAC TTCGGCAAGCTGCACAAAGCAGGTCCGTTGGTAAGACCCAAATGAATGAACAGTCTTCAAGAAGCCATTTTGTGTTCACATTGCGTATATCAGGAGTAAA TGAGGGTACCGAACAACAAGTGCAAGGAGTTCTAAACCTCATTGATCTTGCTGGAAGCGAGCGACTCTCGAGGAGTGGGGCAACTGGAGACAGGTTGAAG GAAACTCAGGCCATCAACAGAAGCTTGTCATGCTTGAGTGATGTGATATTTTCTTTGGCAAAGAAAGAGGACCATGTTCCGTTTAGGAACTCAAAATTGA CTTACCTTCTGCAGCCTTGTCTAGGAGGCGATTCCAAAACCCTGATGTTTGTCAATATTTCTCCGGACCCTGCTTCAGTTGGGGAATCTCTGTGTTCTCT TCGGTTTGCAGCCAGAGTCAATGCTTGTGAAATTGGTATTCCTCGACGTCAAATGCTAGCTCAAATGCCAGCTCGACCTGCAGATTCGCGCTTGAGTTAT GGCTAA
AA sequence Show only first row Show all	>Potri.011G031200.1 pacid=42781755 polypeptide=Potri.011G031200.1.p locus=Potri.011G031200 ID=Potri.011G031200.1.v4.1 annot-version=v4.1 MASRNQNRPPRSPSSKKEGVEGIPLDKRRRIAMGRTGGATNVERKPFGSVNRKLDVTATSDVGSCAEGSDCGNVEFTKEEVDALVNERLKMKKFDHKGNL ELVSELNARLKVCIKWFQKRDESHVEEEGKLQIALDALEKKCTETEAEMKNKEERFSATISELRQDNACLQERLSKEESEKLDAIACHRKENEARIALEA LQASLSKDLEKAQQDILAANQRASSVDDMYKRLQEYNLSLQQYNSKLHAELEVARESLKRVEKEKSTIVENHSTLRGRYSSLQDQLNLARTAQDEALNQK DTLANEVKCLRGELQQVREDRDRQVAQVQALTSDVVKYKESTGESCAKLEYLMEKTKSLEETCSSQREQICLLEHQLTAANEMLKMSDLSSIETRTEFEK QKRTVRELQERLAETENQLVEGEKLRKKLHNTILELKGNIRVFCRVRPVLPDDGAGSEPPVISYPTSTEALGRGIDVIQSAGQKYPFTFDKVFNHDASQQ EVFVEISQLVQSALDGYKVCIFAYGQTGSGKTYTMMGRPEAPEQKGLIPRSLEQIFQTSQSLMAQGWKYKMQASMLEIYNETIRDLLSTNKSSSTENGAP GKQYTIKHDANGNTYVTDLTIVDVCRMEEISSLLRQAAQSRSVGKTQMNEQSSRSHFVFTLRISGVNEGTEQQVQGVLNLIDLAGSERLSRSGATGDRLK ETQAINRSLSCLSDVIFSLAKKEDHVPFRNSKLTYLLQPCLGGDSKTLMFVNISPDPASVGESLCSLRFAARVNACEIGIPRRQMLAQMPARPADSRLSY G

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G21270		KATAP, ATK1	KINESIN-LIKE PROTEIN IN ARABI...		Potri.011G031200 [exp]	0	1	ATK1.2
AT2G36200			P-loop containing nucleoside t...		Potri.016G077800 [exp]	1.41	0.9691
AT1G64960		HEB1	hypersensitive to excess boron...		Potri.007G055400 [exp]	2.64	0.9599
AT4G38070	bHLH		basic helix-loop-helix (bHLH) ...		Potri.001G415800 [exp]	2.82	0.9619
AT2G33560		BUBR1	BUB1-related (BUB1: budding un...		Potri.005G258300 [exp]	3.74	0.9682
AT1G02730		SOS6, ATCSLD5	SALT OVERLY SENSITIVE 6, CELLU...		Potri.014G125100 [exp]	4.24	0.9608	ATCSLD5.1
AT1G44110		CYCA1;1	Cyclin A1;1 (.1)		Potri.005G181400 [exp]	5.65	0.9474
AT3G63130		ATRANGAP1, RANG...	RAN GTPASE-ACTIVATING PROTEIN ...		Potri.005G209600 [exp]	6.16	0.9465	Pt-RANGAP1.1
AT5G02370			ATP binding microtubule motor ...		Potri.006G085300 [exp]	6.92	0.9424
AT3G23890		ATTOPII, TOPII	topoisomerase II (.1.2)		Potri.009G058900 [exp]	7.07	0.9618	TOP2.3
AT1G72670		IQD8	IQ-domain 8 (.1)		Potri.003G042700 [exp]	7.34	0.9644

Compare expression of checked genes

Potri.011G031200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.