Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-PSBQ2.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G05180 261 / 2e-88 PSII-Q, PSBQ, PSBQ-2 photosystem II subunit Q-2 (.1) AT4G21280 239 / 3e-80 PSBQ, PSBQA, PSBQ-1 PHOTOSYSTEM II SUBUNIT Q-1, photosystem II subunit QA (.1.2) AT3G01440 53 / 2e-08 PnsL3, PQL2, PQL1 PsbQ-like 2, Photosynthetic NDH subcomplex L 3, PsbQ-like 1 (.1) AT1G14150 45 / 8e-06 PnsL2, PQL2, PQL1 PsbQ-like 1, Photosynthetic NDH subcomplex L 2, PsbQ-like 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G031500 [exp] 341 / 5e-120 AT4G05180 269 / 1e-91 photosystem II subunit Q-2 (.1) Potri.001G416400 [exp] 45 / 1e-05 AT3G01440 230 / 2e-76 PsbQ-like 2, Photosynthetic NDH subcomplex L 3, PsbQ-like 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020071 [exp] 223 / 8e-74 AT4G05180 282 / 2e-97 photosystem II subunit Q-2 (.1) Lus10018385 [exp] 220 / 2e-72 AT4G05180 275 / 3e-94 photosystem II subunit Q-2 (.1) Lus10007627 [exp] 214 / 3e-70 AT4G05180 281 / 7e-97 photosystem II subunit Q-2 (.1) Lus10006751 [exp] 206 / 6e-64 AT4G05180 271 / 7e-89 photosystem II subunit Q-2 (.1) Lus10037159 [exp] 44 / 4e-05 AT1G14150 177 / 6e-57 PsbQ-like 1, Photosynthetic NDH subcomplex L 2, PsbQ-like 2 (.1.2) Lus10036622 [exp] 44 / 4e-05 AT3G01440 237 / 2e-79 PsbQ-like 2, Photosynthetic NDH subcomplex L 3, PsbQ-like 1 (.1) Lus10035839 [exp] 44 / 5e-05 AT3G01440 232 / 2e-77 PsbQ-like 2, Photosynthetic NDH subcomplex L 3, PsbQ-like 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05757 [poplar] [flax] PsbQ Oxygen evolving enhancer protein 3 (PsbQ)
Representative CDS sequence Show only first row Show all	>Potri.011G031300.1 pacid=42780358 polypeptide=Potri.011G031300.1.p locus=Potri.011G031300 ID=Potri.011G031300.1.v4.1 annot-version=v4.1 ATGGCACAAGCAATGGCTTCAATGGCTGGCCTACGTGGAACATCTCAGGCTGTCCTTGAAGGTAGCCTCCAGCTAAGTGGTTCAAACAGGTTGTTGAAGG TGCCTAGCAACACCGCTCGTGTGGCTGTGGCACTTCCTGGTCTTACTGTTAAAGCCCAACAACAAGTGTCTGCTGAGCCTGAAACTAGCCGTAGGGGGAT GTTGGGTCTTGTTGCTGCTGGTTTGGCTTCTGGTTCTTTTGTTCAAGCTGTTCTTGCTGCCGCTCTCCCTATCAAAGTTGGCCCTCCTCCCGCTCCTTCT GGCGGACTACCTGGGACGTTGAACTCTGATGAAGCAAGAGACTTGGTCCTGCCATTGAAAGAAAGGTTTTTCTTGCAACCACTCCCCCCAGCTGCGGCAG CAGCAAGGGCTAAGGAGTCAGCTAAGGAGATTATTGGTGTGAAAGGTTTGATTGACAAGAAGGCTTGGCCTTATGTCCAAAATGATCTTCGCCTCAAGTC TTCATATCTTCGTTATGATCTCAACACTGTTATATCTGCTAAGTCCAAGGATGAGAAGAAATCCCTCAAGGAACTTACTGGAAAGCTCTTTGATACCATC GGCAATCTGGACCATGCAGCAAAGATTAAGAGCACCCCTGAAGCAGAGAAGTACTATGCTCAGACTGTATCTGCTCTGAATGATGTTCTTGCTAAGCTTG GTTAA
AA sequence Show only first row Show all	>Potri.011G031300.1 pacid=42780358 polypeptide=Potri.011G031300.1.p locus=Potri.011G031300 ID=Potri.011G031300.1.v4.1 annot-version=v4.1 MAQAMASMAGLRGTSQAVLEGSLQLSGSNRLLKVPSNTARVAVALPGLTVKAQQQVSAEPETSRRGMLGLVAAGLASGSFVQAVLAAALPIKVGPPPAPS GGLPGTLNSDEARDLVLPLKERFFLQPLPPAAAAARAKESAKEIIGVKGLIDKKAWPYVQNDLRLKSSYLRYDLNTVISAKSKDEKKSLKELTGKLFDTI GNLDHAAKIKSTPEAEKYYAQTVSALNDVLAKLG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G05180		PSII-Q, PSBQ, P...	photosystem II subunit Q-2 (.1...		Potri.011G031300 [exp]	0	1	Pt-PSBQ2.2
AT5G12080		ATMSL10, MSL10	mechanosensitive channel of sm...		Potri.006G144100 [exp]	1.73	0.9878
AT1G08380		PSAO	photosystem I subunit O (.1)		Potri.009G160800 [exp]	2.82	0.9817
AT2G43560			FKBP-like peptidyl-prolyl cis-...		Potri.017G017500 [exp]	3.46	0.9742
AT4G25050		ACP4	acyl carrier protein 4 (.1.2)		Potri.012G105300 [exp]	4.00	0.9708
AT4G13030			P-loop containing nucleoside t...		Potri.014G124300 [exp]	4.12	0.9652
AT1G74730			Protein of unknown function (D...		Potri.012G070600 [exp]	5.47	0.9812
AT2G30570		PSBW	photosystem II reaction center...		Potri.002G044300 [exp]	5.65	0.9793
AT1G30380		PSAK	photosystem I subunit K (.1)		Potri.018G027600 [exp]	6.32	0.9787	Pt-PSAK.1
AT1G74070			Cyclophilin-like peptidyl-prol...		Potri.012G058700 [exp]	7.54	0.9644
AT1G15820		CP24, LHCB6	light harvesting complex photo...		Potri.001G210000 [exp]	9.53	0.9718	Pt-LHCB6.2,1

Compare expression of checked genes

Potri.011G031300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.