Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21310 257 / 5e-89 Protein of unknown function (DUF1218) (.1) AT2G32280 206 / 7e-69 Protein of unknown function (DUF1218) (.1) AT1G11500 147 / 2e-45 Protein of unknown function (DUF1218) (.1) AT1G05291 94 / 3e-24 Protein of unknown function (DUF1218) (.1) AT5G17210 46 / 3e-06 Protein of unknown function (DUF1218) (.1), Protein of unknown function (DUF1218) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G031200 [exp] 282 / 8e-99 AT4G21310 226 / 1e-76 Protein of unknown function (DUF1218) (.1) Potri.017G040900 [exp] 230 / 4e-78 AT2G32280 240 / 2e-82 Protein of unknown function (DUF1218) (.1) Potri.007G119600 [exp] 216 / 1e-72 AT2G32280 227 / 3e-77 Protein of unknown function (DUF1218) (.1) Potri.019G048300 [exp] 44 / 1e-05 AT5G17210 188 / 1e-60 Protein of unknown function (DUF1218) (.1), Protein of unknown function (DUF1218) (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007626 [exp] 256 / 2e-88 AT4G21310 252 / 6e-87 Protein of unknown function (DUF1218) (.1) Lus10018386 [exp] 255 / 5e-88 AT4G21310 252 / 5e-87 Protein of unknown function (DUF1218) (.1) Lus10038567 [exp] 213 / 2e-71 AT2G32280 218 / 1e-73 Protein of unknown function (DUF1218) (.1) Lus10039706 [exp] 169 / 3e-54 AT2G32280 222 / 4e-75 Protein of unknown function (DUF1218) (.1) Lus10018495 [exp] 168 / 1e-53 AT2G32280 221 / 6e-75 Protein of unknown function (DUF1218) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06749 [poplar] [flax] DUF1218 Protein of unknown function (DUF1218)
Representative CDS sequence Show only first row Show all	>Potri.011G031500.1 pacid=42781243 polypeptide=Potri.011G031500.1.p locus=Potri.011G031500 ID=Potri.011G031500.1.v4.1 annot-version=v4.1 ATGGCCAAAAACATTGGCTTTCTGGTTTGTCTCTTAATCATGGCATTGGATGTTGTTGCTGGCATACTTGGGATTGAAGCTGAGATGGCTCAAAACAAGG TGAAGCATTTAAAGATGTGGATTTTTGACTGTAGAGACCCAAGTCATCAAGCTTTCAAGCTAGGCTTGGCTGCGGTGATACTTCTTTCCCTTGCTCATGT CGTTGCTACCTTGCTTGGTGGCTGCACTTGCATGTGCTCCAAGGAAGAATTCAACAAGGCATCTGCTAACAAGCAACTAGCTGTCGCTTCCCTTTTCTTC TCATGGATTATACTGGCAATTGGGTTCTCATTGCTGATCATAGGGACAATGGCGAACTCAAAATCAAGAAAATTATGTGGACTATCACATAATCGTGTTC TGTCAATTGGAGGCATTCTGTGTTTTGTTCATGGACTCTTCACAGTTTCCTATTATGTATCCGCCACTGCTACAGCCAGAGACAATTCTCGGCATCATGA CCGTAATGCAACTCAAGCTTAG
AA sequence Show only first row Show all	>Potri.011G031500.1 pacid=42781243 polypeptide=Potri.011G031500.1.p locus=Potri.011G031500 ID=Potri.011G031500.1.v4.1 annot-version=v4.1 MAKNIGFLVCLLIMALDVVAGILGIEAEMAQNKVKHLKMWIFDCRDPSHQAFKLGLAAVILLSLAHVVATLLGGCTCMCSKEEFNKASANKQLAVASLFF SWIILAIGFSLLIIGTMANSKSRKLCGLSHNRVLSIGGILCFVHGLFTVSYYVSATATARDNSRHHDRNATQA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G21310			Protein of unknown function (D...		Potri.011G031500 [exp]	0	1
AT1G67330			Protein of unknown function (D...		Potri.001G056300 [exp]	9.16	0.8325
AT3G15620		UVR3	UV REPAIR DEFECTIVE 3, DNA pho...		Potri.003G060000 [exp]	11.22	0.8277
AT3G25855			Copper transport protein famil...		Potri.008G119200 [exp]	15.65	0.7697
AT2G13570	CCAAT	NF-YB7	"nuclear factor Y, subunit B7"...		Potri.007G103901 [exp]	18.33	0.8227
AT5G60490		FLA12	FASCICLIN-like arabinogalactan...		Potri.004G210600 [exp]	27.65	0.8148
AT3G04280		ARR22	response regulator 22 (.1.2.3)		Potri.003G172200 [exp]	33.43	0.7958
AT5G03170		ATFLA11, FLA11,...	ARABIDOPSIS FASCICLIN-LIKE ARA...		Potri.013G151300 [exp]	34.39	0.8032
AT5G60490		FLA12	FASCICLIN-like arabinogalactan...		Potri.019G120900 [exp]	38.06	0.8008	Pt-FLA14.3
AT1G19600			pfkB-like carbohydrate kinase ...		Potri.002G034000 [exp]	39.62	0.7991
					Potri.015G001700 [exp]	40.81	0.7954

Compare expression of checked genes

Potri.011G031500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.