Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21320 414 / 2e-147 HSA32 HEAT-STRESS-ASSOCIATED 32, Aldolase-type TIM barrel family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G031100 [exp] 176 / 1e-55 AT4G21320 173 / 9e-55 HEAT-STRESS-ASSOCIATED 32, Aldolase-type TIM barrel family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018387 [exp] 445 / 2e-159 AT4G21320 445 / 2e-159 HEAT-STRESS-ASSOCIATED 32, Aldolase-type TIM barrel family protein (.1) Lus10007625 [exp] 396 / 1e-134 AT4G21320 400 / 6e-136 HEAT-STRESS-ASSOCIATED 32, Aldolase-type TIM barrel family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0036 [poplar] [flax] TIM_barrel PF02679 [poplar] [flax] ComA (2R)-phospho-3-sulfolactate synthase (ComA)
Representative CDS sequence Show only first row Show all	>Potri.011G031600.1 pacid=42781850 polypeptide=Potri.011G031600.1.p locus=Potri.011G031600 ID=Potri.011G031600.1.v4.1 annot-version=v4.1 ATGTCATCATCCTCAGTGTATTACCAATGGAAGAGCTTCGAGGAAGACGAAGATCGACCAGAGAAGCCTCGTAGATTTGGAGTTACAGAGATGAGAGGCC CTCAGTATACTCTTTTAAGCCAGAACATGCTTCAAGATGTTTTTGAGACAATGGGGCAGTTTGTTGATGGACTGAAATTCTCTGGAGGTTCTCATAGTTT GATGCCTAAGTCTTTTATTAAAGAAGTGGTTGACATGGCCCACAAACATGATGTGTATGTTAGTACCGGTGATTGGGCTGAGCATTTGCTTCATAAAGGT CCAACGGCTTTCAAAGAGTATGTTGAGGAATGTAAAAGTATGGGGTTTGACACAATTGAGCTGAATGTGGGATCGCTTGGAGTTCCTGAAGAAACACTTT TGAGATACGTGCGCTTGATTAAGAGTGGTGGTTTGAAAGCCAAGCCTCAATTTGCAGTCAAGTTTAACAGGTCAGACATTCCGATTGGTGGGCATAGAGC ATTTGGGGCTTATGTACCCCCAACACCTCGAAGCTCTGAACTGGTTGAAGATGTTAATCTCCTGATTAACATGGCCGAGAGATGCTTAGAGGCTGGGGCA GACATGATTATGATTGATGCAGACGACATCTGCAAGGATGTTGATTCTCTGAGAGCAGATATAGTTGCAAAAGTAATTGGACGACTAGGTCTTGAGAAGA CCATGTTTGAAGCATCAAATACAAAAACTGCAGACTGGTTTATCAAACGTTATGGCCCAAAGGTGAACCTCTTTGTGGATCATTCTCAAGTAATTGGTCT AGAATGCCTCCGAGGCGGCCACAACATGGGTAGAAGACAAGCTTCTGCTCTTGGCTCCTCATACTTTCTCTTCTGA
AA sequence Show only first row Show all	>Potri.011G031600.1 pacid=42781850 polypeptide=Potri.011G031600.1.p locus=Potri.011G031600 ID=Potri.011G031600.1.v4.1 annot-version=v4.1 MSSSSVYYQWKSFEEDEDRPEKPRRFGVTEMRGPQYTLLSQNMLQDVFETMGQFVDGLKFSGGSHSLMPKSFIKEVVDMAHKHDVYVSTGDWAEHLLHKG PTAFKEYVEECKSMGFDTIELNVGSLGVPEETLLRYVRLIKSGGLKAKPQFAVKFNRSDIPIGGHRAFGAYVPPTPRSSELVEDVNLLINMAERCLEAGA DMIMIDADDICKDVDSLRADIVAKVIGRLGLEKTMFEASNTKTADWFIKRYGPKVNLFVDHSQVIGLECLRGGHNMGRRQASALGSSYFLF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G21320		HSA32	HEAT-STRESS-ASSOCIATED 32, Ald...		Potri.011G031600 [exp]	0	1
AT5G27690			Heavy metal transport/detoxifi...		Potri.002G206900 [exp]	3.46	0.8716
AT5G41470			Nuclear transport factor 2 (NT...		Potri.003G131500 [exp]	14.10	0.8911
AT3G10985		WI12, ATWI-12, ...	ARABIDOPSIS THALIANA WOUND-IND...		Potri.008G075200 [exp]	18.30	0.8653
AT1G16810			unknown protein		Potri.005G174400 [exp]	18.92	0.8751
AT3G13130			unknown protein		Potri.016G007400 [exp]	21.16	0.7635
AT3G24100			Uncharacterised protein family...		Potri.014G056600 [exp]	28.72	0.8273
					Potri.003G131550 [exp]	33.76	0.8665
AT1G56170	CCAAT	NF-YC2, ATHAP5B...	"nuclear factor Y, subunit C2"...		Potri.007G070900 [exp]	39.33	0.7994
AT2G45380			unknown protein		Potri.014G069100 [exp]	43.47	0.8554
AT3G24500		MBF1C, ATMBF1C	multiprotein bridging factor 1...		Potri.018G075200 [exp]	45.95	0.8548

Compare expression of checked genes

Potri.011G031600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.