Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25830 382 / 5e-126 ATTPS-CIN "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1) AT3G25820 382 / 5e-126 ATTPS-CIN "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1.2) AT4G16740 381 / 6e-126 ATTPS03 terpene synthase 03 (.1.2) AT3G25810 382 / 1e-125 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT4G16730 353 / 2e-115 AtTPS02 terpene synthase 02 (.1) AT2G24210 354 / 4e-115 AtTPS10 terpene synthase 10 (.1) AT1G61680 263 / 2e-80 ATTPS14 terpene synthase 14 (.1.2) AT3G29410 243 / 3e-72 AtTPS25 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT3G14520 237 / 3e-70 AtTPS18 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT5G23960 233 / 2e-69 ATTPS21 terpene synthase 21 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G023006 [exp] 482 / 9e-165 AT3G25830 540 / 0.0 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1) Potri.019G023008 [exp] 477 / 1e-163 AT3G25830 535 / 0.0 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1) Potri.007G118600 [exp] 456 / 9e-155 AT4G16740 462 / 3e-157 terpene synthase 03 (.1.2) Potri.019G022338 [exp] 451 / 1e-152 AT3G25830 483 / 8e-165 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1) Potri.017G041700 [exp] 440 / 3e-148 AT3G25810 432 / 3e-145 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Potri.001G308300 [exp] 431 / 7e-145 AT3G25830 507 / 4e-174 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1) Potri.001G308200 [exp] 429 / 4e-144 AT3G25810 499 / 4e-171 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Potri.007G119700 [exp] 405 / 3e-134 AT4G16740 438 / 8e-147 terpene synthase 03 (.1.2) Potri.019G023020 [exp] 355 / 2e-118 AT3G25830 440 / 1e-151 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007624 [exp] 570 / 0 AT4G16740 334 / 8e-108 terpene synthase 03 (.1.2) Lus10018390 [exp] 564 / 0 AT4G16730 330 / 5e-107 terpene synthase 02 (.1) Lus10039713 [exp] 369 / 3e-120 AT4G16740 409 / 4e-136 terpene synthase 03 (.1.2) Lus10018500 [exp] 365 / 2e-119 AT4G16740 419 / 1e-140 terpene synthase 03 (.1.2) Lus10018501 [exp] 366 / 4e-119 AT4G16740 413 / 1e-137 terpene synthase 03 (.1.2) Lus10033643 [exp] 350 / 5e-113 AT4G16730 356 / 2e-115 terpene synthase 02 (.1) Lus10006356 [exp] 345 / 5e-111 AT3G25820 371 / 3e-121 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1.2) Lus10025922 [exp] 344 / 5e-111 AT3G25810 353 / 3e-114 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10038179 [exp] 344 / 6e-111 AT3G25810 351 / 2e-113 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10006355 [exp] 338 / 3e-108 AT2G24210 361 / 7e-117 terpene synthase 10 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01397 [poplar] [flax] Terpene_synth Terpene synthase, N-terminal domain CL0613 [poplar] [flax] Terp_synthase PF03936 [poplar] [flax] Terpene_synth_C Terpene synthase family, metal binding domain
Representative CDS sequence Show only first row Show all	>Potri.011G031800.2 pacid=42780606 polypeptide=Potri.011G031800.2.p locus=Potri.011G031800 ID=Potri.011G031800.2.v4.1 annot-version=v4.1 ATGGAATACAAGCAACAAGTGCAAGTTGAGCAAAATTCTTTGCAATGCCAGAACAATTCTGAAGACATTGATATGAGACAAGAAAGGCGGTCTGCCAATT ATAAACCAAATATTTGGAAATATGATTTCCTGCAATCTCTTTCTAGCAAATATGATGAAGAGCAATACCGAAGGGTGACTGAGAAGCTGAGGGAGGAAGT TAAGAGCATTTTTGTGGAAGCAGTGGACTTATTGGCTAAGTTGAAGCTTGTTGATAGCGTCATAAAGCTCGGCCTGGGGAGTTACTTTGAGGAAGAAATC AAACAATCTCTAGACATCATAGCAGCTTCGATCAAGAATAAAAATCTCAAAGTGGAAGAGAATCTTTATGTCACTGCCTTACGCTTCAAGCTCCTCAGGC TGCACGGATATGAAGTTTCACAAGGTGTCTTCAATGGCTTTTTCGACGGCACTTTTGACAAAAGCAAATGCACAGATGTTAGGGGCTTGATCGAGCTATT CGAGGCCTCACATTTAGCTTACGAGGGTGAAGCTACGCTGGATGACGCTAAAGCCTTTTCAACTAGAATTTTAACCGGTATAAATTGTAGTGCCATTGAA AGCGACCTTGCAAAACATGTGGTGCATGTCTTAGAACTTCCTTCCCACTGGAGAGTGATGTGGTTTGATGTCAAATGGCACATCAACGCGTACGAGAATG ACAAGCAAACAAATAGGCATTTACTTGCCTTGGCTAAAGTGAACTTCAACATGGTCCAAGCCACGCTCCAAAAAGATCTGAGGGATGTTTCCAGGTGGTG GAGGAATTTGGGTATAATAGAGAATCTAAGCTTCACAAGGGACCGACTGGTTGAGAGCTTCTTGTGCACAGTGGGACTTGTATTTGAGCCTAAGTACAGC AGCTTTAGGAAGTGGCTCACTAAAGTCATAATCATGATACTAATCATAGATGATGTCTATGATGTTTATGGTTCTCTGCACGAGCTGCAGCAATTCACCA AAGCTGTTAGCAGGTGGGATACCGGAGAAGTTCAAGAACTGCCAGAATGTATGAAGATTTGTTTCCAAACCCTCTATGATATAACTAATGAAATGGCTCT CGAAATGCAAAGGGAGAAAGATGGGAGTCAAGCTCTACCTCACCTAAAGAAAGTGTGGGCAGATTTTTGCAAAGCAATGTTCATGGAGGCAAAATGGTTC AATGAAGGATACACACCTTCCTTGCAAGAGTATTTGAGCAATGCATGGGTTTCATCATCAGGCACTGTGATTTCAGTTCATTCATTTTTCTCTGTAATGA CTGAGCTAGAGACAGGAGAGATATCGAATTTTCTCGAGAAAAATCAAGATTTGGTGTACAACATTTCTCTCATAATTCGGCTTTGCAATGATCTTGGGAC TTCTGTGGCGGAGCAAGAGAGAGGAGATGCTGCTTCATCAGTAGTGTGCTATATGCGAGAAGTGAATGTTTCGGAGGAAGTTGCAAGGAATCATATAAAT AACATAGTAAAGAAAACATGGAAGAAAATAAATGGACACTGCTTCGCAAAATCTCCTACGCTGCAATTGCTTGTTAATATCAACACCAATATGGCACGGG TGGTCCATAACCTCTACCAACATGGAGATGGGTTTGGTGTTCAAGATCGCCATGAGAATAAAAAGCAGATCCTCACCCTCCTTGTTGAACCTTTCAAGCT CGATTTACCAGAATTTTCCTTCTAA
AA sequence Show only first row Show all	>Potri.011G031800.2 pacid=42780606 polypeptide=Potri.011G031800.2.p locus=Potri.011G031800 ID=Potri.011G031800.2.v4.1 annot-version=v4.1 MEYKQQVQVEQNSLQCQNNSEDIDMRQERRSANYKPNIWKYDFLQSLSSKYDEEQYRRVTEKLREEVKSIFVEAVDLLAKLKLVDSVIKLGLGSYFEEEI KQSLDIIAASIKNKNLKVEENLYVTALRFKLLRLHGYEVSQGVFNGFFDGTFDKSKCTDVRGLIELFEASHLAYEGEATLDDAKAFSTRILTGINCSAIE SDLAKHVVHVLELPSHWRVMWFDVKWHINAYENDKQTNRHLLALAKVNFNMVQATLQKDLRDVSRWWRNLGIIENLSFTRDRLVESFLCTVGLVFEPKYS SFRKWLTKVIIMILIIDDVYDVYGSLHELQQFTKAVSRWDTGEVQELPECMKICFQTLYDITNEMALEMQREKDGSQALPHLKKVWADFCKAMFMEAKWF NEGYTPSLQEYLSNAWVSSSGTVISVHSFFSVMTELETGEISNFLEKNQDLVYNISLIIRLCNDLGTSVAEQERGDAASSVVCYMREVNVSEEVARNHIN NIVKKTWKKINGHCFAKSPTLQLLVNINTNMARVVHNLYQHGDGFGVQDRHENKKQILTLLVEPFKLDLPEFSF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G25830		ATTPS-CIN	"terpene synthase-like sequenc...		Potri.011G031800 [exp]	0	1
AT4G16260			Glycosyl hydrolase superfamily...		Potri.001G255100 [exp]	1.41	0.9977	Pt-GNS1.4
AT4G15480		UGT84A1	UDP-Glycosyltransferase superf...		Potri.009G095300 [exp]	5.65	0.9956
AT1G52565			unknown protein		Potri.001G192800 [exp]	7.07	0.9904
					Potri.003G165550 [exp]	8.06	0.9871
AT4G34120		CBSX2, CDCP1, L...	LOSS OF THE TIMING OF ET AND J...		Potri.001G303900 [exp]	14.83	0.9599
AT2G15220			Plant basic secretory protein ...		Potri.009G094600 [exp]	17.14	0.9918
AT4G11650		ATOSM34	osmotin 34 (.1)		Potri.001G107950 [exp]	17.83	0.9828
AT3G04720		HEL, PR-4, PR4	HEVEIN-LIKE, pathogenesis-rela...		Potri.013G041900 [exp]	19.89	0.9910
AT2G42990			GDSL-like Lipase/Acylhydrolase...		Potri.005G205100 [exp]	20.44	0.9630
AT4G11650		ATOSM34	osmotin 34 (.1)		Potri.001G107800 [exp]	24.33	0.9735	Pt-OLP.5

Compare expression of checked genes

Potri.011G031800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.