Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22104 309 / 3e-99 Phototropic-responsive NPH3 family protein (.1) AT3G19850 199 / 9e-57 Phototropic-responsive NPH3 family protein (.1) AT1G50280 177 / 3e-49 Phototropic-responsive NPH3 family protein (.1) AT5G48800 173 / 4e-47 Phototropic-responsive NPH3 family protein (.1) AT3G50840 168 / 2e-45 Phototropic-responsive NPH3 family protein (.1) AT5G66560 167 / 2e-44 Phototropic-responsive NPH3 family protein (.1) AT5G03250 166 / 2e-44 Phototropic-responsive NPH3 family protein (.1) AT3G08570 166 / 3e-44 Phototropic-responsive NPH3 family protein (.1) AT1G30440 163 / 4e-43 Phototropic-responsive NPH3 family protein (.1) AT3G08660 159 / 3e-42 Phototropic-responsive NPH3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G030600 [exp] 783 / 0 AT3G22104 313 / 1e-100 Phototropic-responsive NPH3 family protein (.1) Potri.007G118800 [exp] 440 / 1e-149 AT3G22104 505 / 1e-175 Phototropic-responsive NPH3 family protein (.1) Potri.017G041600 [exp] 417 / 1e-140 AT3G22104 488 / 4e-169 Phototropic-responsive NPH3 family protein (.1) Potri.010G170900 [exp] 263 / 2e-80 AT3G19850 426 / 2e-143 Phototropic-responsive NPH3 family protein (.1) Potri.008G085500 [exp] 254 / 3e-77 AT3G19850 449 / 2e-152 Phototropic-responsive NPH3 family protein (.1) Potri.001G357100 [exp] 173 / 7e-47 AT1G30440 971 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.002G242300 [exp] 172 / 8e-47 AT5G48800 899 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.016G090400 [exp] 171 / 2e-46 AT5G03250 768 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.017G048200 [exp] 170 / 2e-45 AT5G64330 993 / 0.0 ROOT PHOTOTROPISM 3, NON-PHOTOTROPIC HYPOCOTYL 3, Phototropic-responsive NPH3 family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039710 [exp] 383 / 2e-127 AT3G22104 433 / 9e-148 Phototropic-responsive NPH3 family protein (.1) Lus10018499 [exp] 368 / 1e-121 AT3G22104 420 / 2e-142 Phototropic-responsive NPH3 family protein (.1) Lus10030554 [exp] 181 / 2e-49 AT3G19850 414 / 5e-138 Phototropic-responsive NPH3 family protein (.1) Lus10012901 [exp] 174 / 3e-47 AT3G19850 415 / 3e-138 Phototropic-responsive NPH3 family protein (.1) Lus10034200 [exp] 171 / 1e-46 AT3G19850 390 / 1e-129 Phototropic-responsive NPH3 family protein (.1) Lus10025928 [exp] 170 / 8e-46 AT5G48800 925 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10014337 [exp] 170 / 1e-45 AT5G10250 620 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 3, Phototropic-responsive NPH3 family protein (.1) Lus10013799 [exp] 170 / 2e-45 AT5G03250 672 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10023523 [exp] 169 / 3e-45 AT5G03250 667 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10026511 [exp] 168 / 7e-45 AT5G03250 665 / 0.0 Phototropic-responsive NPH3 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03000 [poplar] [flax] NPH3 NPH3 family
Representative CDS sequence Show only first row Show all	>Potri.011G032100.3 pacid=42781171 polypeptide=Potri.011G032100.3.p locus=Potri.011G032100 ID=Potri.011G032100.3.v4.1 annot-version=v4.1 ATGAACGAAGTGTTTTGCTGTCAATTTTTCTTGTTTTTTGCCTGCTCTGGTCAAAGAAAGTTTCAATATCTTCTGAAAATTCTTTCATCTTTCTCTGCTA GACTCGGCAAATTATTTGGTAATTTGGCTAGTAGTTCAAGAAAACTGAAAGTAATATTTGACAACTTTCCAGGAGGTTCACATGTTTTTGAGCTCATGGC AAGGTTTTGTTATAACAATGGCACCATTGAAATTACTCCTTCTAACGTTGTCCTGCTAAACTGTGCTGCTCATTACATGGAGATTGGCAGTAATAGCTCA GAAAAGCTTAACTTAGGAGATCAGACTGAGAAATTTCTTGAAGGGATCAATTACTGGACTTGGTCTGAGCTCCTACAAGCTCTGAAACAGTGCCAAGATT TACTTCCTGCAACGAATTCATCATTTTTGCTTGAGAAAGTTTTGGATTGCCTTGTAGGAAGGCTTACTTTGCCTACTCTGGCAAGCCCATTTACATGTTC GTCAAACAATTCAAGTTCTCAGTTATCCTGTGATACAAGCAGCACGTGTAGTATGAGGAACAACTGGTCTCAAACAACTTGGTGGTTTGAAGATCTTTTG GTTTTGAATGCCAATTCATTTGAGAAGGTGATCAGGATGATGGTGTCCCAGAAACTAGAGCATGCTACCATTTTTAGGTTCATTGTTTTTCGCCTAAAAT CGATATATATCAGGGTCAGACCAGCTGAGGAGTGCAGAATCACAGCGGTTTCAATCAATCTGCTTTCCTTGTTCGATAGGAGTTCTCTTTCTTGCAAAGG CTTATTTGATATTCTACTGGCAGCAAGGTTGAAAAATTTAAGCAAGTTCTATAAACTCAAGTTAGAGCATCTGATAGGTTCAATGCTGGATCAATCAACT TTGGATCGTCTACTTGTTCCATCTCCACAAAGGAACCATCATGTGTATGATGTGAATTTAGTTTTGAGGCTTGCAAAAGCCTTTCTCCTTGAAGGTTCAA AGATGTCTCGAAATCAATGGAGTAAGGTTGCTAGCTTGATGGACTCATACCTTATAGAAGTGGCTCCAGATTTCCTTCTGAAACCTGCCAAGTTTGCAGC ATTAGTAATGGTTCTGCCAGATTCTGCTAGAGAATCCAGTGACAGACTCTATCAAGCCATTGACACGTATCTCCAGGTCCATGTCCAATTATCTGAAGAG GAAAAGATGAGACTCTGCTCCGTAGTCAACCGCGACAAGCTCTCGGCCGAAGCTTTGGAACACCTTGCTCAAAACTCAAACTTTCCATCAAGAGAAACAC TCCGAAGTTTCATTACTCAACAATCCAAGATCAATATCTCAATCCATGATCACTTCTCTTATCTCAAAAACTCGAGTCAGTCTACCTTTCATAGTGATGC GAAGGGAGAGCAAGAGGCCCTTGAACAAATCCTTATTTATGCAAGAAGGCATGGACATTCAAAGAAGATTGACAATCTTGAAACAGAATTGCAAGGAATG CAGAAAAGGGTGGCTGAATGGGAGAAAGTTTGTACAATGATGTGTTCAGAGAAGAGAATTGTGACAAAACCAAGTTTGCATGGCCTTGGAAAGGCTAGAT CATTGCCAAAACTCTGCTCATGA
AA sequence Show only first row Show all	>Potri.011G032100.3 pacid=42781171 polypeptide=Potri.011G032100.3.p locus=Potri.011G032100 ID=Potri.011G032100.3.v4.1 annot-version=v4.1 MNEVFCCQFFLFFACSGQRKFQYLLKILSSFSARLGKLFGNLASSSRKLKVIFDNFPGGSHVFELMARFCYNNGTIEITPSNVVLLNCAAHYMEIGSNSS EKLNLGDQTEKFLEGINYWTWSELLQALKQCQDLLPATNSSFLLEKVLDCLVGRLTLPTLASPFTCSSNNSSSQLSCDTSSTCSMRNNWSQTTWWFEDLL VLNANSFEKVIRMMVSQKLEHATIFRFIVFRLKSIYIRVRPAEECRITAVSINLLSLFDRSSLSCKGLFDILLAARLKNLSKFYKLKLEHLIGSMLDQST LDRLLVPSPQRNHHVYDVNLVLRLAKAFLLEGSKMSRNQWSKVASLMDSYLIEVAPDFLLKPAKFAALVMVLPDSARESSDRLYQAIDTYLQVHVQLSEE EKMRLCSVVNRDKLSAEALEHLAQNSNFPSRETLRSFITQQSKINISIHDHFSYLKNSSQSTFHSDAKGEQEALEQILIYARRHGHSKKIDNLETELQGM QKRVAEWEKVCTMMCSEKRIVTKPSLHGLGKARSLPKLCS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G22104			Phototropic-responsive NPH3 fa...		Potri.011G032100 [exp]	0	1
AT3G06890			unknown protein		Potri.008G221000 [exp]	1.73	0.8903
AT3G21510		ATHP3, AHP1	histidine-containing phosphotr...		Potri.005G040400 [exp]	6.00	0.8295	Pt-HPT2.3
AT1G78960		ATLUP2	lupeol synthase 2 (.1)		Potri.009G064950 [exp]	6.00	0.8452
					Potri.012G141550 [exp]	16.91	0.7985
AT1G74680			Exostosin family protein (.1)		Potri.002G210000 [exp]	18.54	0.7713
AT2G32280			Protein of unknown function (D...		Potri.017G040900 [exp]	19.36	0.8469
AT1G02180			ferredoxin-related (.1)		Potri.002G136000 [exp]	21.21	0.7792
AT1G32120			unknown protein		Potri.003G100700 [exp]	22.36	0.7860
AT3G46540			ENTH/VHS family protein (.1)		Potri.009G030500 [exp]	25.27	0.7569
					Potri.012G018900 [exp]	25.78	0.8155

Compare expression of checked genes

Potri.011G032100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.