Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G61690 773 / 0 phosphoinositide binding (.1) AT1G20110 66 / 1e-10 RING/FYVE/PHD zinc finger superfamily protein (.1) AT3G43230 60 / 1e-08 RING/FYVE/PHD-type zinc finger family protein (.1) AT3G14270 53 / 2e-06 FAB1B FORMS APLOID AND BINUCLEATE CELLS 1B, phosphatidylinositol-4-phosphate 5-kinase family protein (.1) AT5G12350 53 / 2e-06 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT3G47660 52 / 4e-06 Regulator of chromosome condensation (RCC1) family protein (.1) AT1G69710 51 / 6e-06 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT4G33240 51 / 7e-06 FAB1A FORMS APLOID AND BINUCLEATE CELLS 1A, 1-phosphatidylinositol-4-phosphate 5-kinases;zinc ion binding;1-phosphatidylinositol-3-phosphate 5-kinases (.1.2.3) AT1G29800 50 / 1e-05 RING/FYVE/PHD-type zinc finger family protein (.1.2) AT1G65920 50 / 1e-05 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G030500 [exp] 1731 / 0 AT1G61690 634 / 0.0 phosphoinositide binding (.1) Potri.005G242700 [exp] 63 / 1e-09 AT1G20110 555 / 0.0 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.002G018900 [exp] 62 / 2e-09 AT1G20110 566 / 0.0 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.018G064200 [exp] 61 / 3e-09 AT3G43230 649 / 0.0 RING/FYVE/PHD-type zinc finger family protein (.1) Potri.006G135800 [exp] 60 / 6e-09 AT3G43230 649 / 0.0 RING/FYVE/PHD-type zinc finger family protein (.1) Potri.011G071900 [exp] 59 / 2e-08 AT1G29800 744 / 0.0 RING/FYVE/PHD-type zinc finger family protein (.1.2) Potri.003G072300 [exp] 58 / 4e-08 AT3G14270 2157 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1B, phosphatidylinositol-4-phosphate 5-kinase family protein (.1) Potri.011G106700 [exp] 57 / 7e-08 AT1G29800 703 / 0.0 RING/FYVE/PHD-type zinc finger family protein (.1.2) Potri.004G062500 [exp] 55 / 4e-07 AT1G29800 729 / 0.0 RING/FYVE/PHD-type zinc finger family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018391 [exp] 651 / 0 AT1G61690 838 / 0.0 phosphoinositide binding (.1) Lus10007623 [exp] 337 / 7e-105 AT1G61690 354 / 6e-113 phosphoinositide binding (.1) Lus10017277 [exp] 66 / 2e-10 AT1G20110 654 / 0.0 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10013571 [exp] 65 / 3e-10 AT1G20110 650 / 0.0 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10027659 [exp] 57 / 8e-08 AT3G43230 654 / 0.0 RING/FYVE/PHD-type zinc finger family protein (.1) Lus10029271 [exp] 57 / 8e-08 AT1G29800 713 / 0.0 RING/FYVE/PHD-type zinc finger family protein (.1.2) Lus10007320 [exp] 57 / 9e-08 AT1G29800 709 / 0.0 RING/FYVE/PHD-type zinc finger family protein (.1.2) Lus10038127 [exp] 56 / 4e-07 AT4G33240 1429 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1A, 1-phosphatidylinositol-4-phosphate 5-kinases;zinc ion binding;1-phosphatidylinositol-3-phosphate 5-kinases (.1.2.3) Lus10005173 [exp] 53 / 2e-06 AT4G33240 1063 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1A, 1-phosphatidylinositol-4-phosphate 5-kinases;zinc ion binding;1-phosphatidylinositol-3-phosphate 5-kinases (.1.2.3) Lus10039922 [exp] 52 / 2e-06 AT3G43230 661 / 0.0 RING/FYVE/PHD-type zinc finger family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0390 [poplar] [flax] zf-FYVE-PHD PF01363 [poplar] [flax] FYVE FYVE zinc finger
Representative CDS sequence Show only first row Show all	>Potri.011G032200.1 pacid=42782365 polypeptide=Potri.011G032200.1.p locus=Potri.011G032200 ID=Potri.011G032200.1.v4.1 annot-version=v4.1 ATGTTGGAGAAGATTGGATTACCAGCAAAGCCATCAATAAGAGGGAACAATTGGGTTGTTGATGCGTCACATTGTCAAGGATGTTCTTCTCAGTTCACCT TCATCAATCGCAAGCATCATTGCCGAAGATGTGGGGGATTGTTTTGCGGAAATTGCACTCAGCAAAGAATGGTTTTGCGTGGTCAAGGTGATTCACCTGT GCGTATTTGTGATCCATGTAAGACGTTAGAAGAAGCTGCACGTTTTGAGATGCGGTATGGACACAAGAATAGAGCTGCAAAAGGAAGTTCAAGAATGACA TCAAAGAACGAGGATGACATTTTAAACCAGATTCTAGACAATGATGGAAAGGAATCTTCTTCATCAGGACAACAGTTCAACACTGACCTGGTTTCTAGCA TTCAAAGGGCAAGTAGCAGTGCTTCATACTCAAACACTAAACAAGTTACTGCTCTGGATGGTGGAGGAGATATAAGTAGAAGTCATTCTGTTGATGAGCA CAATCATGTAAATAGTGAGGTGGGATCAGCCACTCCTGAGGAACTACGTCAACAAGCTTTGGATGAAAAGAAGAGGTATAAAATTTTGAAAGGAGAGGGG AAGTCCAAGGAGGCTCTGAAAGCCTTTAAGAGAGGAAAGGAACTTGAGAGGCAGGCTGACGCTTTGGAATTGTCCATTAGAAAAAATCGTAGGAAGGGTT TGTCTTCTGGCAACACAGTTGAGATTCAGAATGAAGATGGCATCAAAGAATCTGTCAGAAAAAGTAAATGCCTTGCTCATGTCAATGAAAAGGATGACCT AACTGCTGAACTCAGAGGACTGGGGTGGTCTGACATGGATCTCCATGAGAAAGACAAAAATCCAGTGAAAATGAGTTTAGAGGGTGAACTATCTTCTCTT CTTGGAGAAATCTCGGGTAGAACTAATAAGGACATGGGAAACAGTGGCATTGACAAAACCCAGGTTGTTGAACTTAAAAGAAAGGCGCTAGCTTTGAAAC GTGAAGGAAAGCTTGGTGAAGCCAAGGAAGAATTGAAGAAAGCGAAAGTTTTAGAAAAGCAGCTTGAAGAACAGGAGCTGTTGGGTGTGGATGAAGAATC TGATGATGAGATATCTGCTTTAATCCGTAGTATGGACAATGATCCAGAAGACAAACTATTAGCTGAGGGAGTGCCAGATCATGGTTTTAATTTTGATCAC CTTGTGGGCACATCTGATGATCTTGGTGTGGATAGTAACTTTGAAGTGACTGACGAGGATCTGGTGGATCCAGAATTATCTGCCACACTTAAATCGTTAG GCTGGACTGATGATTCTGGTAGTTCAGAAACCACTGCTACTCAGTCTGTCCCTATTGACAGGGAAACACTACAAAGTGAAATTCTTTCGCTCAAAAGAGA AGCACTTAATCACAAACGAGCAGGTAATGTCACAGAGGCTATGGCACATCTAAAGAAGGCAAAGTTACTTGAGAGAGACTTGGAAAGCTTGGGGGGTGAA GTAAGCAGCTTAATTGCACATGATCCCACAATAATGAAGAAAGGTTCACCTTCTCAAAATACCAAGGAAAAGAACAATGTGAGTTCTAAACCCGCACCAA AGAGTAGATTAATGATTCAGAAAGAGCTCTTGGCTTTGAAAAAGAAGGCTCTTGCTTTAAGAAGAGAAGGTAGATTGGATGAGGCAGATGAAGAGCTGAA GAAAGGCAAGGTTCTTGAACAACAACTTGAAGAGATGGAAAATGCTTCAATTGTCAAGGAGAAACAGGCCCGTGGTGGAGTTAAGAACCCAGATTTGGAA TATGAACATCCTGTTATTTCTGGAGGTCCACTGATTAGAGAGGAGGAGGAGGATGTAACAGATCAAGATATGCATGACCCAGCATACCTTTCCCTTCTAA GTAACTTGGGTTGGAAAGATGATGATGATGAGCATCCAAACTCTTCATTTAACCCTCCCAAGGAAGATGATAACACCAATATCTTGGTCACTCATTCTAC ATCCAATATCTCGATGAAGATACCAAGGAGAAGTAAAGCTGAAATACAGAGGGAACTCATAGGCCTGAAAAGAAAGGCTCTTACTTTAAGACGTGAAGGA AAGACTAATGAGGCAGAGGAAGTTCTTACAGCAGCAAAATCATTAGAAGCTGAGATGGAAGAGATGGAAACACCCAAAAAAGAAATTCAGACCGAGTCTA GCAGACTCAAGGACAAAATTATCAGACCTGTTATCAGTGCAGCGGATGAAGGAGATATGGATGATATTACAGAAAAAGATATGCATGACCCATCACTTAT CTCTATGCTAACGAATTTAGGGTGGAAGGATGATGAAGATGAAGCTGTAACTGCACAAGCAAAGCCATCTAAACAAGTTTCAGATAGTTCTGTGAATTCT ACTAACCCATCCACAATTCCATTCTCGTCCAGCATTTCAGCTGCCAGACAAAGAAGCAAAGGTGAAATCCAGAGAGAGCTCTTGGGTTTGAAAAGAAAGG CCCTTGCACTTAGGCGTAAAGGAGAAACTGAAGAAGCTGAGGAATTGTTGAAGATGGCCAATGTACTGGAGTCCCAAATGGAAGAACCGGAAGGTCCAAA GGAGCTTCTCATTGATGATTCTGAGGACAAAAAACCTCATTGTTCTGGATCATTAATTAACCATGAAAAGCAGAATAATGTGAAAATTGCGTTGGGAACT AGTGAAAAGTTTGCATCAGCAGCAGGGGATCCCAATGAAAAAGTTGTGGAGTCATTTGTTTGTTCAGGAAGAAAGGAAAGTGATACAATTGCTCCTCTTT TACGGAGTCCTGATATTTTCAATTCAGTGTCCTTTGAGCTCAACAAAGGCAAGCATCCATCTGTAGGACAATTGGATCTCATGGGTGAAATCAGATCCCT AAGCAACTCAGGAATAAATCATGGAAATGATTTCATTCCTCCTGCCCATCAGTCTGTGAATGTAATGGATTTGCTGACAGGAGATGATTGGAACAGTCCT CAAATACCAGCTGGAAAACTAGAAGATAAAGTCAATTTTGGTTCCGATGCATCCTGTCTGCCTGAGCATCATGTTCATGTTGGCTCCTTGGGAAGTCACA CAGTCAGAGGCAAGGATGAAGAAATCAGTTCTGTTTCAGATATTTCCCTTTCTTCTGAGCCCCATGGTCATGTGCATGCACCCAAAAATTTTGGAAGCAA AGAAAATGCTAGAACAGAACTGAGCGAAGAAACAGTTAATGTAGGCAAGAAACCACATGTAGATGAAACAGATTCTGTCCAAGGATTGGTTTCTCAGGAC AACAAAATTTCCCTTCAACAAGAAGTTTTGGCTCGTAAGAGGAAGGCAGTTGCTTTAAAGAGAGAAGGAAAACTGGGAGAAGCTCGAGAGGAACTTCGGC AGGCAAAGCTGTTGGAGAAGAGTCTTGAGGTAGAGACACCTGGACCTGTAGGTGATAGCCATGATGGGTCAACATCTGCGTCAAATGCTCCATCTGCTCA ACAAAAGGATCCTAGTGCCCCAAATTTGGCTCCAAAACCATTGTCTGGGCGTGATCGATTTAAATTGCAACAGGAGTCACTGAGTCACAAACGTCAGGCC CTAAAGCTGCGAAGAGAAGGCCGGGTGGAAGAAGCAGAAGCTGAGTTTGAATTGGCCAAGGCTCTTGAAGCCCAGTTGGATGAGATGTCTTCTGCCAACG TAGCAGAACCAGTAGATGATGTAGTTGTTGAAGATCTTCTCGATCCTCAACTTCTATCTGCCTTGAAAGCAATCGGAATTGAAGATACCAGTACTATATC ACAAGGTTCAGAGAGACCAGGGCCTGTGAAAGTTAGTCCTACCAAGAGTGAAAGCAATAGCCAGGAAAGAATTCAGTTGGAAGAACGGATCAAGGCAGAG AAGGTAAAGGCAGTAAATTTGAAACGTGCAGGGAAGCAAGCTGAAGCTTTGGATGCTCTCCGACGATCCAAATTGTTTGAAAAGAAACTAAATTCCTTGG CATGA
AA sequence Show only first row Show all	>Potri.011G032200.1 pacid=42782365 polypeptide=Potri.011G032200.1.p locus=Potri.011G032200 ID=Potri.011G032200.1.v4.1 annot-version=v4.1 MLEKIGLPAKPSIRGNNWVVDASHCQGCSSQFTFINRKHHCRRCGGLFCGNCTQQRMVLRGQGDSPVRICDPCKTLEEAARFEMRYGHKNRAAKGSSRMT SKNEDDILNQILDNDGKESSSSGQQFNTDLVSSIQRASSSASYSNTKQVTALDGGGDISRSHSVDEHNHVNSEVGSATPEELRQQALDEKKRYKILKGEG KSKEALKAFKRGKELERQADALELSIRKNRRKGLSSGNTVEIQNEDGIKESVRKSKCLAHVNEKDDLTAELRGLGWSDMDLHEKDKNPVKMSLEGELSSL LGEISGRTNKDMGNSGIDKTQVVELKRKALALKREGKLGEAKEELKKAKVLEKQLEEQELLGVDEESDDEISALIRSMDNDPEDKLLAEGVPDHGFNFDH LVGTSDDLGVDSNFEVTDEDLVDPELSATLKSLGWTDDSGSSETTATQSVPIDRETLQSEILSLKREALNHKRAGNVTEAMAHLKKAKLLERDLESLGGE VSSLIAHDPTIMKKGSPSQNTKEKNNVSSKPAPKSRLMIQKELLALKKKALALRREGRLDEADEELKKGKVLEQQLEEMENASIVKEKQARGGVKNPDLE YEHPVISGGPLIREEEEDVTDQDMHDPAYLSLLSNLGWKDDDDEHPNSSFNPPKEDDNTNILVTHSTSNISMKIPRRSKAEIQRELIGLKRKALTLRREG KTNEAEEVLTAAKSLEAEMEEMETPKKEIQTESSRLKDKIIRPVISAADEGDMDDITEKDMHDPSLISMLTNLGWKDDEDEAVTAQAKPSKQVSDSSVNS TNPSTIPFSSSISAARQRSKGEIQRELLGLKRKALALRRKGETEEAEELLKMANVLESQMEEPEGPKELLIDDSEDKKPHCSGSLINHEKQNNVKIALGT SEKFASAAGDPNEKVVESFVCSGRKESDTIAPLLRSPDIFNSVSFELNKGKHPSVGQLDLMGEIRSLSNSGINHGNDFIPPAHQSVNVMDLLTGDDWNSP QIPAGKLEDKVNFGSDASCLPEHHVHVGSLGSHTVRGKDEEISSVSDISLSSEPHGHVHAPKNFGSKENARTELSEETVNVGKKPHVDETDSVQGLVSQD NKISLQQEVLARKRKAVALKREGKLGEAREELRQAKLLEKSLEVETPGPVGDSHDGSTSASNAPSAQQKDPSAPNLAPKPLSGRDRFKLQQESLSHKRQA LKLRREGRVEEAEAEFELAKALEAQLDEMSSANVAEPVDDVVVEDLLDPQLLSALKAIGIEDTSTISQGSERPGPVKVSPTKSESNSQERIQLEERIKAE KVKAVNLKRAGKQAEALDALRRSKLFEKKLNSLA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G61690			phosphoinositide binding (.1)		Potri.011G032200 [exp]	0	1
AT1G24560			unknown protein		Potri.010G049400 [exp]	3.87	0.7162
AT5G05830			RING/FYVE/PHD zinc finger supe...		Potri.004G059200 [exp]	10.95	0.6358
AT1G47330			CBS domain-containing protein ...		Potri.014G196900 [exp]	11.18	0.5931
AT2G45910			U-box domain-containing protei...		Potri.002G160200 [exp]	13.96	0.6320
AT3G60410			Protein of unknown function (D...		Potri.014G044800 [exp]	21.81	0.6171
AT5G24360		AtIRE1b, ATIRE1...	ARABIDOPSIS THALIANA INOSITOL ...		Potri.005G254000 [exp]	24.73	0.5901
AT5G13560			unknown protein		Potri.008G048100 [exp]	35.49	0.4761
AT5G08240			unknown protein		Potri.001G408900 [exp]	44.21	0.5456
AT3G58630	Trihelix		sequence-specific DNA binding ...		Potri.003G118600 [exp]	56.55	0.5255
AT1G03080			kinase interacting (KIP1-like)...		Potri.002G049600 [exp]	60.76	0.5665

Compare expression of checked genes

Potri.011G032200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.