Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11440 72 / 1e-13 unknown protein AT3G29075 50 / 1e-06 glycine-rich protein (.1) AT5G39570 46 / 2e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G029500 [exp] 154 / 3e-45 AT1G11440 68 / 2e-13 unknown protein Potri.017G087200 [exp] 55 / 4e-08 AT5G39570 112 / 3e-27 unknown protein Potri.004G127400 [exp] 48 / 6e-06 AT5G39570 139 / 4e-37 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007616 [exp] 105 / 3e-26 AT1G11440 100 / 2e-24 unknown protein Lus10018397 [exp] 103 / 3e-25 AT1G11440 98 / 2e-23 unknown protein Lus10029322 [exp] 54 / 5e-08 AT5G39570 144 / 2e-40 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.011G032700.1 pacid=42781666 polypeptide=Potri.011G032700.1.p locus=Potri.011G032700 ID=Potri.011G032700.1.v4.1 annot-version=v4.1 ATGGCCTACTATAGTTACAGCTATGAAGATGATTATCAAGGTGAGTACTATACTGGAGAGTACTCGATAACCCCTTATAATAGCAGCTATGATCCTTCCC CAGATCATGATTCAGTGGCTTATTCCAGCTACAACTACAATGAGCACCAAGTTCTTGCCTATGATCCACCTTCTTATTATGCTGCTTATGATCCTGTCTC AAGTTACTCAAGAACTGCTTACTCTGCATCTACTTTCAGTGAGCCTGTGTGTATTGAGTATGATCCGGGTCATTACTATAATGAACAGACGCGATTCATT GTCTCGTATAATGTCTCAGAGTTTAATGAGCCTGCGTACGAAGAATATGATCCAACTCCTTACGATGGTGGCTATGATCTCGCTGCAACTTATGGAAAAC CTCTTCCTCACTCGGCCGAAACTTGCTATCCTCGTTCAACGCCGGATCCGAATGTCTCATCACTGAATGGTTTCTCTTATGGATCGATTATAGCACCTTA TGGAAAAGATGAAGTCAATGAACCTGCTGCAAAACCGCAAAATGAAAGCAAACCAATTAGCCCTCCTGCTATTGAAGCAGCGCCGGTGCCCGTGCCCCTT GAACTTAGCAACGGCCGTGGAAATTCTCAAGAGAAGTTGCAGAAAGGTGAAGAAAGTGAGGAAAAAGGAGTTGATCATCCTGATCCCTCGCCTGGCTATG ATACCGGAATTGCCAATGGATCATGTGGAGAATTTGGTTATGAGTATGGCATGCCAGGGCCACAAATTCCACCAGGTTATGGCTTGGAAGCAATGGACCT TTGTGAAAGTTTATTTGGTTACTGGCCTTGTCTATCTCGGTATGCTAGGAATGTCAATGACTGTCAAGAAGCTGCTGATTGTGGAAGCCGTGGGAATCAA TGGAAAGGGACTGCTGATTATCTCTTCGGAAGCTCAAATCCTTATGGTGAAAGGGATGATGGAGGCAACAGCTACGGGAACGCTATATATGGCTATGAAA GGCATTATCAGGAGGAACCTCTCTCCTATCAGGTTAAGTATGTTGAAGATTCATGGTCATCGTAA
AA sequence Show only first row Show all	>Potri.011G032700.1 pacid=42781666 polypeptide=Potri.011G032700.1.p locus=Potri.011G032700 ID=Potri.011G032700.1.v4.1 annot-version=v4.1 MAYYSYSYEDDYQGEYYTGEYSITPYNSSYDPSPDHDSVAYSSYNYNEHQVLAYDPPSYYAAYDPVSSYSRTAYSASTFSEPVCIEYDPGHYYNEQTRFI VSYNVSEFNEPAYEEYDPTPYDGGYDLAATYGKPLPHSAETCYPRSTPDPNVSSLNGFSYGSIIAPYGKDEVNEPAAKPQNESKPISPPAIEAAPVPVPL ELSNGRGNSQEKLQKGEESEEKGVDHPDPSPGYDTGIANGSCGEFGYEYGMPGPQIPPGYGLEAMDLCESLFGYWPCLSRYARNVNDCQEAADCGSRGNQ WKGTADYLFGSSNPYGERDDGGNSYGNAIYGYERHYQEEPLSYQVKYVEDSWSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G11440			unknown protein		Potri.011G032700 [exp]	0	1
AT3G22200		HER1, GABA-T, P...	POLLEN-PISTIL INCOMPATIBILITY ...		Potri.006G020900 [exp]	2.00	0.7836	POP2.2
AT4G03020			transducin family protein / WD...		Potri.010G026800 [exp]	2.44	0.7743
AT1G19250		FMO1	flavin-dependent monooxygenase...		Potri.006G060300 [exp]	6.40	0.7887
AT4G16370		ATOPT3	oligopeptide transporter (.1)		Potri.006G006000 [exp]	7.87	0.7044	OPT3.2
AT3G18280			Bifunctional inhibitor/lipid-t...		Potri.004G096000 [exp]	12.64	0.7566
AT5G56180		ATARP8	actin-related protein 8 (.1.2)		Potri.001G471700 [exp]	16.43	0.6834	ARP8.2,ARP908
AT4G04830		ATMSRB5	methionine sulfoxide reductase...		Potri.008G198600 [exp]	16.61	0.7323	PtrMsrB3
AT5G45920			SGNH hydrolase-type esterase s...		Potri.011G063800 [exp]	16.97	0.7582
AT3G12620			Protein phosphatase 2C family ...		Potri.016G082800 [exp]	17.14	0.6946
AT2G25490		FBL6, EBF1	EIN3-binding F box protein 1 (...		Potri.018G027700 [exp]	19.07	0.7292

Compare expression of checked genes

Potri.011G032700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.