Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11430 262 / 4e-89 plastid developmental protein DAG, putative (.1) AT3G06790 153 / 5e-46 plastid developmental protein DAG, putative (.1.2) AT2G33430 144 / 8e-43 DAL1, DAL differentiation and greening-like 1 (.1) AT1G32580 144 / 1e-42 plastid developmental protein DAG, putative (.1) AT2G35240 140 / 5e-41 plastid developmental protein DAG, putative (.1) AT4G20020 135 / 9e-38 unknown protein AT5G44780 135 / 2e-36 unknown protein AT3G15000 127 / 1e-34 cobalt ion binding (.1) AT1G72530 109 / 1e-29 plastid developmental protein DAG, putative (.1.2) AT1G53260 66 / 6e-13 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G007200 [exp] 166 / 6e-51 AT3G06790 269 / 6e-91 plastid developmental protein DAG, putative (.1.2) Potri.003G015100 [exp] 149 / 3e-42 AT4G20020 239 / 2e-74 unknown protein Potri.008G169900 [exp] 138 / 3e-40 AT1G32580 284 / 2e-97 plastid developmental protein DAG, putative (.1) Potri.010G068300 [exp] 137 / 5e-40 AT1G32580 314 / 2e-109 plastid developmental protein DAG, putative (.1) Potri.001G393400 [exp] 130 / 8e-36 AT3G15000 263 / 2e-84 cobalt ion binding (.1) Potri.011G112200 [exp] 130 / 1e-35 AT3G15000 245 / 2e-77 cobalt ion binding (.1) Potri.004G218650 [exp] 106 / 3e-26 AT4G20020 187 / 5e-53 unknown protein Potri.004G218800 [exp] 94 / 4e-22 AT4G20020 182 / 8e-51 unknown protein Potri.008G022200 [exp] 82 / 4e-18 AT3G20930 427 / 3e-149 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007615 [exp] 269 / 1e-91 AT1G11430 314 / 2e-109 plastid developmental protein DAG, putative (.1) Lus10018398 [exp] 265 / 8e-91 AT1G11430 309 / 2e-108 plastid developmental protein DAG, putative (.1) Lus10016825 [exp] 151 / 6e-45 AT3G06790 286 / 1e-97 plastid developmental protein DAG, putative (.1.2) Lus10011789 [exp] 142 / 1e-41 AT1G32580 341 / 5e-120 plastid developmental protein DAG, putative (.1) Lus10023744 [exp] 142 / 1e-41 AT1G32580 342 / 2e-120 plastid developmental protein DAG, putative (.1) Lus10036589 [exp] 145 / 2e-41 AT4G20020 271 / 1e-87 unknown protein Lus10035806 [exp] 143 / 1e-40 AT4G20020 278 / 4e-90 unknown protein Lus10037713 [exp] 143 / 2e-40 AT4G20020 261 / 9e-84 unknown protein Lus10014696 [exp] 135 / 1e-37 AT3G15000 291 / 1e-95 cobalt ion binding (.1) Lus10043130 [exp] 131 / 1e-35 AT3G15000 284 / 6e-92 cobalt ion binding (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.011G032900.2 pacid=42780624 polypeptide=Potri.011G032900.2.p locus=Potri.011G032900 ID=Potri.011G032900.2.v4.1 annot-version=v4.1 ATGGCAACATTCACACTCTCTTCATCTCTAACACCCAAAACCCTAACCCCTTCGCTCTCAAACCTTAAACCCACCTTCCTAACTTCACTCAAACCCCAAT CATGGACTTGTTCACAGCTGATTTCAGCTCCCAAGATTAGGTATCAGCCCTTGATTACAAGGGCTGCTGTAGGTTCTGATTACTCAGCAAGAAGAAGTAA CAGCAGTAATGATGATAGAGAGACGATACTGTTACCCGGTTGTGATTATAATCATTGGTTGATTGTTATGGAGTTCCCTAAAGACCCTGCTCCTACTAGA GAACAGATGATTGATACTTATCTTAATACTCTTGCTACTGTCTTGGGCAGCATGGAAGAGGCGAAGAAGAATATGTATGCTTTTAGCACCACCACTTACA CTGGGTTCCAATGCACAGTAGATGAAGCCACATCTGAGAAATTTAAGGGTTTGCCTGGGGTCCTCTGGGTACTGCCAGACTCGTACATAGATGTTAAAAA CAAAGATTATGGAGGAGACAAGTATGTCAATGGGGAGATTATTCCATGCACATACCCTACTTATCAACCGAAGCAACGCACTACTTCAAAGTATGAGAAT AGAAGGTATGAGAGACGGAGAGATGGACCACCTCCAGATCGAAGAAGAACAAGACAGGGGACAACGAAGTCAGAGCCAGCCTCTCCATGA
AA sequence Show only first row Show all	>Potri.011G032900.2 pacid=42780624 polypeptide=Potri.011G032900.2.p locus=Potri.011G032900 ID=Potri.011G032900.2.v4.1 annot-version=v4.1 MATFTLSSSLTPKTLTPSLSNLKPTFLTSLKPQSWTCSQLISAPKIRYQPLITRAAVGSDYSARRSNSSNDDRETILLPGCDYNHWLIVMEFPKDPAPTR EQMIDTYLNTLATVLGSMEEAKKNMYAFSTTTYTGFQCTVDEATSEKFKGLPGVLWVLPDSYIDVKNKDYGGDKYVNGEIIPCTYPTYQPKQRTTSKYEN RRYERRRDGPPPDRRRTRQGTTKSEPASP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G11430			plastid developmental protein ...		Potri.011G032900 [exp]	0	1
AT5G57345			unknown protein		Potri.006G165800 [exp]	1.00	0.9858
AT4G11175			Nucleic acid-binding, OB-fold-...		Potri.006G241100 [exp]	1.41	0.9851
AT1G09900			Pentatricopeptide repeat (PPR-...		Potri.002G109500 [exp]	3.31	0.9805
AT2G01870			unknown protein		Potri.001G257400 [exp]	4.00	0.9830
AT1G74970		TWN3, RPS9	ribosomal protein S9 (.1)		Potri.002G132200 [exp]	4.58	0.9839	Pt-RPS9.2
AT5G13410			FKBP-like peptidyl-prolyl cis-...		Potri.001G068300 [exp]	4.58	0.9825
AT1G64510			Translation elongation factor...		Potri.001G088300 [exp]	5.47	0.9825
AT5G14660		DEF2, PDF1B, AT...	peptide deformylase 1B (.1.2)		Potri.001G346700 [exp]	6.32	0.9780
AT1G32990		PRPL11	plastid ribosomal protein l11 ...		Potri.001G450800 [exp]	7.48	0.9825
AT5G39210		CRR7	chlororespiratory reduction 7 ...		Potri.004G120300 [exp]	7.74	0.9803

Compare expression of checked genes

Potri.011G032900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.