Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G61660 216 / 2e-65 bHLH bHLH112 basic helix-loop-helix (bHLH) DNA-binding superfamily protein AT3G20640 211 / 4e-63 bHLH bHLH123 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G21340 138 / 3e-37 bHLH bHLH103, B70 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G20100 136 / 5e-36 bHLH basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT4G05170 133 / 7e-36 bHLH bHLH114 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G19500 131 / 6e-35 bHLH bHLH113 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G29100 127 / 2e-32 bHLH bHLH068 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G27660 126 / 9e-32 bHLH bHLH110 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G31050 119 / 3e-29 bHLH bHLH111 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G05710 110 / 1e-28 bHLH bHLH153 basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G029100 [exp] 756 / 0 AT1G61660 216 / 1e-65 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.001G410600 [exp] 350 / 8e-117 AT3G20640 274 / 2e-87 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.011G129500 [exp] 330 / 8e-109 AT3G20640 289 / 3e-93 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.018G083700 [exp] 146 / 1e-39 AT4G29100 279 / 3e-91 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.003G051600 [exp] 132 / 5e-35 AT4G29100 197 / 4e-60 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.001G185900 [exp] 130 / 3e-34 AT4G29100 212 / 5e-66 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.001G299300 [exp] 128 / 6e-34 AT3G19500 152 / 4e-45 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.009G094300 [exp] 128 / 7e-34 AT3G19500 161 / 2e-48 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.005G230800 [exp] 131 / 2e-33 AT1G27660 247 / 3e-77 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018400 [exp] 243 / 9e-77 AT1G61660 195 / 3e-59 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Lus10007613 [exp] 236 / 4e-74 AT1G61660 194 / 1e-58 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Lus10038550 [exp] 209 / 6e-62 AT3G20640 231 / 4e-70 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10014807 [exp] 165 / 2e-45 AT3G20640 179 / 5e-51 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10023669 [exp] 132 / 3e-34 AT2G20100 223 / 5e-69 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10013874 [exp] 126 / 2e-32 AT3G19500 151 / 7e-44 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10025599 [exp] 115 / 2e-30 AT1G05710 169 / 8e-55 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Lus10027064 [exp] 114 / 3e-30 AT1G05710 174 / 9e-57 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Lus10010638 [exp] 118 / 6e-29 AT1G27660 180 / 1e-51 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10014279 [exp] 101 / 2e-22 AT5G44230 374 / 5e-120 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.011G033000.3 pacid=42782077 polypeptide=Potri.011G033000.3.p locus=Potri.011G033000 ID=Potri.011G033000.3.v4.1 annot-version=v4.1 ATGGCAGAGGAGTTTCAGGCCGGGATTTGTGGCGAGAACTGGTGGATGAATTCTTCGAAAAGCATGTTCATCGGCGGCTTATCACCATGTTCTACGGTGA GCCTCCCTAGTGATCATATGGGAACTTATAATGGGTCATGGGCCACGGCTGATATGGTAGACTTGAAGCCGAGGTCAATATCATGCAAGGAGTCTCATAA CACTACTTCGGTGTCTGATACCTCTATAGCTTTCCTAAATTCTCCAAAGCCTCAACAGGCTAATTCAGATAGTGGGGGTAGCAGTAATTTGATTGATTCC ACCTTGCAAATGATGGGGTTCGGGCTCTCGTCGTCGTCGTCGTCATCGGATTGGAACCAAGCTTTACTCTCTGGGAATGGAAGAACTGAGAGTTACAATT CCATGCTGCAAGAAGACATGAATTCAGGAGGACTAAACTCTTCTCAAATCCGAAAAGATTGGAGTCCAAAGAGCTATGCAAGAACTGCTGAAGATTTCTC CTTGGACCAACAAAGGCTAAATCCGGTTAACAGTTCCAGCAATTCGCCACCAACTTGCCAGGGATTTTCTACAGGCTTTTCAATGGAGCCAACAGCTTCT TATTGCTACCCTTCAACATTGATACAAAGTTTATTTGAACCAGATCATCTTCAACCACAACAAGTACAATCTCTTTTCAACAACCGGCCCATGAATTACC TGTCGCCGACAGCTCCAAATTATGGGACCAACATGAGTGAATTGTCATCTCCTTCTTGGACTAAAGTATCTCCCTTGATAAAATCTTGTTTGCAAAAGCA ACAGGCTAGTAGTTTGCACTTTACTAACAACACAACCTACTGGAATGCCTCACCAACCGGAATAAATGATATTAGAGCAAGCTTTTTACCCTCATCACCA TCTCAATTTCTTCTGCCAACTTTTCAAGAGAAACCCAATTGCCCCAGCCTCACTATACAGCCTAACAGAGAAGAAGTTCGAGACTCGGTTTCAGTAGTTA AGAAAGGATGTGAACCAGCATTCAAAAGGCCTCGAATTGAAGCACCATCTCCACTACCAACTTTCAAGGTCCGGAAAGAGAAGCTAGGGGACCGAATAAC TGCCCTCCAGCAATTGGTTTCACCTTTCGGAAAGACTGATACTGCATCGGTTCTCCATGAAGCTATTGAGTATATCAAGTTCCTCCATGACCAAGCCACT GTTTTAAGTACTCCATACATGAAAAATGGAAATCCCATTCAACATCAACAGGCTCCAGAAGACAAATTGAACGACCTAGAAGGGCCAAAACAAGATCTAA GAAGCCGAGGACTATGTCTTGTGCCAATCTCCAGCACATTTCCTGTTGCTAATGAGACCACTGCTGATTTCTGGACACCAACATTTGGTGGCACTTTCAG GTAG
AA sequence Show only first row Show all	>Potri.011G033000.3 pacid=42782077 polypeptide=Potri.011G033000.3.p locus=Potri.011G033000 ID=Potri.011G033000.3.v4.1 annot-version=v4.1 MAEEFQAGICGENWWMNSSKSMFIGGLSPCSTVSLPSDHMGTYNGSWATADMVDLKPRSISCKESHNTTSVSDTSIAFLNSPKPQQANSDSGGSSNLIDS TLQMMGFGLSSSSSSSDWNQALLSGNGRTESYNSMLQEDMNSGGLNSSQIRKDWSPKSYARTAEDFSLDQQRLNPVNSSSNSPPTCQGFSTGFSMEPTAS YCYPSTLIQSLFEPDHLQPQQVQSLFNNRPMNYLSPTAPNYGTNMSELSSPSWTKVSPLIKSCLQKQQASSLHFTNNTTYWNASPTGINDIRASFLPSSP SQFLLPTFQEKPNCPSLTIQPNREEVRDSVSVVKKGCEPAFKRPRIEAPSPLPTFKVRKEKLGDRITALQQLVSPFGKTDTASVLHEAIEYIKFLHDQAT VLSTPYMKNGNPIQHQQAPEDKLNDLEGPKQDLRSRGLCLVPISSTFPVANETTADFWTPTFGGTFR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G61660	bHLH	bHLH112	basic helix-loop-helix (bHLH) ...		Potri.011G033000 [exp]	0	1
AT1G43700	bZIP	SUE3, AtbZIP51,...	sulphate utilization efficienc...		Potri.002G069500 [exp]	1.00	0.8986
AT5G42940			RING/U-box superfamily protein...		Potri.002G124300 [exp]	1.41	0.8913
AT3G06010		ATCHR12	Homeotic gene regulator (.1)		Potri.010G091200 [exp]	3.46	0.8720
AT5G12840	CCAAT	NF-YA1, ATHAP2A...	"nuclear factor Y, subunit A1"...		Potri.009G052900 [exp]	4.89	0.8524	HAP2.5
AT4G31170			Protein kinase superfamily pro...		Potri.006G280000 [exp]	5.74	0.8837
AT1G60670			Protein of unknown function (D...		Potri.010G097000 [exp]	6.00	0.8385
AT2G35530	bZIP	AtbZIP16	basic region/leucine zipper tr...		Potri.003G097600 [exp]	6.24	0.8429
AT2G24360			Protein kinase superfamily pro...		Potri.018G001800 [exp]	9.59	0.8344
					Potri.017G152420 [exp]	13.41	0.8620
AT5G58350		ZIK2, WNK4	with no lysine (K) kinase 4 (....		Potri.013G155100 [exp]	15.29	0.7954

Compare expression of checked genes

Potri.011G033000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.