Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21350 405 / 7e-141 PUB8, B80 plant U-box 8 (.1) AT3G46510 172 / 6e-48 ATPUB13 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) AT2G28830 167 / 2e-45 AtPUB12 PLANT U-BOX 12 (.1) AT3G54850 152 / 5e-41 ATPUB14 plant U-box 14 (.1) AT1G23030 149 / 5e-40 PUB11 ARM repeat superfamily protein (.1) AT5G42340 147 / 4e-39 PUB15 Plant U-Box 15 (.1) AT1G71020 143 / 3e-38 ARM repeat superfamily protein (.1.2) AT3G07360 129 / 4e-33 ATPUB9 ARABIDOPSIS THALIANA PLANT U-BOX 9, plant U-box 9 (.1.2.3) AT1G29340 108 / 1e-25 ATPUB17, PUB17 ARABIDOPSIS THALIANA PLANT U-BOX 17, plant U-box 17 (.1) AT5G01830 107 / 5e-25 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G028800 [exp] 620 / 0 AT4G21350 379 / 8e-131 plant U-box 8 (.1) Potri.009G029600 [exp] 187 / 2e-53 AT3G46510 935 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.001G238500 [exp] 180 / 1e-50 AT3G46510 912 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.008G035700 [exp] 173 / 2e-48 AT3G54850 821 / 0.0 plant U-box 14 (.1) Potri.010G226500 [exp] 169 / 3e-47 AT3G54850 806 / 0.0 plant U-box 14 (.1) Potri.002G009900 [exp] 157 / 2e-42 AT5G42340 763 / 0.0 Plant U-Box 15 (.1) Potri.010G113900 [exp] 156 / 3e-42 AT1G23030 732 / 0.0 ARM repeat superfamily protein (.1) Potri.008G128600 [exp] 155 / 5e-42 AT1G23030 697 / 0.0 ARM repeat superfamily protein (.1) Potri.008G071600 [exp] 149 / 1e-39 AT3G46510 345 / 2e-109 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006747 [exp] 410 / 5e-143 AT4G21350 405 / 6e-141 plant U-box 8 (.1) Lus10020077 [exp] 397 / 1e-137 AT4G21350 413 / 6e-144 plant U-box 8 (.1) Lus10007511 [exp] 177 / 1e-49 AT3G46510 397 / 2e-129 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10016565 [exp] 174 / 2e-48 AT3G46510 884 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10017444 [exp] 173 / 4e-48 AT3G46510 381 / 2e-123 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10040834 [exp] 172 / 8e-48 AT3G46510 879 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10037970 [exp] 157 / 1e-42 AT3G54850 803 / 0.0 plant U-box 14 (.1) Lus10043471 [exp] 155 / 6e-42 AT1G71020 682 / 0.0 ARM repeat superfamily protein (.1.2) Lus10012260 [exp] 155 / 1e-41 AT5G42340 695 / 0.0 Plant U-Box 15 (.1) Lus10034113 [exp] 155 / 4e-41 AT3G59770 1913 / 0.0 ARABIDOPSIS THALIANA SUPPRESSOR OF ACTIN 9, sacI homology domain-containing protein / WW domain-containing protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF04564 [poplar] [flax] U-box U-box domain
Representative CDS sequence Show only first row Show all	>Potri.011G033300.1 pacid=42781169 polypeptide=Potri.011G033300.1.p locus=Potri.011G033300 ID=Potri.011G033300.1.v4.1 annot-version=v4.1 ATGGCCACTCACTTGCCTGATGACTTCAAGTGTCCAATTTCTCTAGAAATCATGTCCGACCCGGTTATTCTCTCTTCGGGTCACACCTTTGACCGCTCCT CAATTCAACGGTGGCTCGACTCCGGCCACCGTACTTGTCCAATTACCAAACTCCCCTTGCCTGAGCACCCTTGTCTTATCCCCAACCACGCCTTGAGAAG CCTGATTTCCAGCTTCACCATCCCAAAATCACAACCAGACCCCAACCCGTGTCGGAACCTGAACCCGGACCAATCGAAGAAATACCAAACCCAGCTTCTA ATCTACACTCTCGTGTCCCCATCTTCGACGCTGGAGTCGAAGCTTCACTCCCTGAGTCAACTCACTAGACTCACCAAGCTGGACTCGGGACCCCGCCGCC AACTTACCGAGTCCGGTGCTGTCTCAGCGGTTCTAAACTGTGTCAACTCGACCGAGTCGGAAATCCAAGAGAAAGCGCTGGCCCTCCTCCTTAATCTCTC TCTTGATGATGATAACAAGGTGGGCCTTGTCGCTGAAGGTGTAATTAGTCGGGTCATAAATGTTATACGGGCTGGGTCGGCAAGTTCCCGGGCCATCGGT TGCACAATTTTGACGAGCTTGGCTGTTGTGGAAGTAAACAAAGCTACAATCGGAGCCTACCCAAATGCGATAAAAACGCTTATTTGGGTTCTTTATAGTG GCAAAGGGCGTGAAGTGAGAGAAGCAGCCACTGCATTGTATGCAATTTGTTCATTTGTTGATAATAGGAAGCGTGCTGTGGAGTGTGGGGCTGTGCCACT TTTGATGAAAATTGGTGGGATGGGGCTGGAAAGAGCGGTGGAAGTTTTGAGTTTGTTGGTGAAATGTAAGGAAGGGAGGGAAGAAATGAGGAAGGTTAAT GGGTGTTTGGAGGTTTTGGTTAAGGTCATTAGGAATGGGAGTGAAAGAGGGGTGCAATGCGCGCTTTTGACATTGACTTGTTTGTGTTGTTTCGCGGAGG AAATGCGTGTTGAGGCGGAAAAAGAAGGGGTTTTGGAGATTTGTGTTGGGTTTTTGGATGACGAGAATGAGAAAATTAGAAGACATGCTTCAAGTTTGGT GCAAACTTTAAGTGGTAGGGGGTAG
AA sequence Show only first row Show all	>Potri.011G033300.1 pacid=42781169 polypeptide=Potri.011G033300.1.p locus=Potri.011G033300 ID=Potri.011G033300.1.v4.1 annot-version=v4.1 MATHLPDDFKCPISLEIMSDPVILSSGHTFDRSSIQRWLDSGHRTCPITKLPLPEHPCLIPNHALRSLISSFTIPKSQPDPNPCRNLNPDQSKKYQTQLL IYTLVSPSSTLESKLHSLSQLTRLTKLDSGPRRQLTESGAVSAVLNCVNSTESEIQEKALALLLNLSLDDDNKVGLVAEGVISRVINVIRAGSASSRAIG CTILTSLAVVEVNKATIGAYPNAIKTLIWVLYSGKGREVREAATALYAICSFVDNRKRAVECGAVPLLMKIGGMGLERAVEVLSLLVKCKEGREEMRKVN GCLEVLVKVIRNGSERGVQCALLTLTCLCCFAEEMRVEAEKEGVLEICVGFLDDENEKIRRHASSLVQTLSGRG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G21350		PUB8, B80	plant U-box 8 (.1)		Potri.011G033300 [exp]	0	1
AT1G70000	MYB		myb-like transcription factor ...		Potri.008G191800 [exp]	2.00	0.8915
AT4G17870		RCAR11, PYR1	regulatory component of ABA re...		Potri.001G142500 [exp]	3.00	0.8850
AT3G47500	DOF	CDF3, AtDof3,3	cycling DOF factor 3 (.1)		Potri.008G087800 [exp]	6.32	0.8683
AT5G55340			MBOAT (membrane bound O-acyl t...		Potri.008G145700 [exp]	7.34	0.8643
AT3G22530			unknown protein		Potri.008G154100 [exp]	7.74	0.8717
AT1G51450		ASH2R, TRO	ARABIDOPSIS Ash2 RELATIVE, TRA...		Potri.009G051400 [exp]	9.79	0.8603
AT2G40330		RCAR9, PYL6	regulatory components of ABA r...		Potri.010G183900 [exp]	11.66	0.8148
AT3G07565			Protein of unknown function (D...		Potri.017G023300 [exp]	11.74	0.8237
AT4G31360			selenium binding (.1)		Potri.006G276300 [exp]	14.14	0.8230
AT4G17500	AP2_ERF	ATERF-1, AtERF1	ethylene responsive element bi...		Potri.001G079900 [exp]	15.09	0.8294

Compare expression of checked genes

Potri.011G033300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.