Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21380 711 / 0 ARK3 receptor kinase 3 (.1) AT1G11410 700 / 0 S-locus lectin protein kinase family protein (.1) AT1G11340 696 / 0 S-locus lectin protein kinase family protein (.1) AT1G65800 693 / 0 ARK2 receptor kinase 2 (.1) AT1G65790 679 / 0 ARK1 receptor kinase 1 (.1) AT4G21390 660 / 0 B120 S-locus lectin protein kinase family protein (.1) AT1G11330 654 / 0 S-locus lectin protein kinase family protein (.1.2) AT1G61610 653 / 0 S-locus lectin protein kinase family protein (.1) AT1G11300 629 / 0 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) AT4G27300 612 / 0 S-locus lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G413800 [exp] 785 / 0 AT4G27290 991 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G028600 [exp] 783 / 0 AT1G11340 875 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G028701 [exp] 780 / 0 AT1G11340 899 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G028466 [exp] 779 / 0 AT1G11340 884 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G125050 [exp] 763 / 0 AT4G27290 870 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G125601 [exp] 750 / 0 AT4G27290 914 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G412300 [exp] 749 / 0 AT4G27290 886 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G409300 [exp] 746 / 0 AT4G27290 875 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G414077 [exp] 741 / 0 AT4G27290 855 / 0.0 S-locus lectin protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038552 [exp] 754 / 0 AT4G27290 879 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10024064 [exp] 743 / 0 AT1G11340 735 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10006746 [exp] 735 / 0 AT1G11340 836 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10020052 [exp] 724 / 0 AT1G11340 858 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10016871 [exp] 715 / 0 AT4G27290 752 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10041680 [exp] 712 / 0 AT1G15520 1646 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10037729 [exp] 709 / 0 AT4G27290 750 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038557 [exp] 708 / 0 AT4G27290 803 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10037865 [exp] 703 / 0 AT4G27300 804 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10018405 [exp] 699 / 0 AT4G21380 952 / 0.0 receptor kinase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00954 [poplar] [flax] S_locus_glycop S-locus glycoprotein domain PF01453 [poplar] [flax] B_lectin D-mannose binding lectin CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0168 [poplar] [flax] PAN PF08276 [poplar] [flax] PAN_2 PAN-like domain CL0168 [poplar] [flax] PF11883 [poplar] [flax] DUF3403 Domain of unknown function (DUF3403)
Representative CDS sequence Show only first row Show all	>Potri.011G035600.1 pacid=42781366 polypeptide=Potri.011G035600.1.p locus=Potri.011G035600 ID=Potri.011G035600.1.v4.1 annot-version=v4.1 ATGAGTTTGTCCAAAATCTTGTCACTAATCATCCATGCCTCCATGGACACCAAGAGAACTCTCTTTTCCAATGCCATTGTACTTTTCATGGCTTCCATTC TGTTCGCATCTTGTTGTGGAATTGACATCATAAATCAAACCCACTTCATCTCAGATAGCAAAAATGAATCCCTCATATCCTCCATCGGAAATTTCAAACT AGGCTTCTTTAGTCCAGGCAACTCTCCAAGCCGGTACGTTGGAATATGGTTCAACAAGGTCTCGAAACAAACTGTTGTTTGGGTTGCCAACAGAGAAATT CCACTTAAGAAATCCGCTGGCATTTTCAAGATTGCTGCAGATGGAAATCTGGCTGTTGTTGATAGCAAAGGAAGGACTCCTCTTTGGTCCACAAACATTT CTATGCCAAATGCCAACTCATCTGCCAAGCTCTTACCTTCAGGCAACCTTGTTTTGGTGGTTAAGAACAACTCAGGTAACTCTGAATCCATTGTATGGCA AAGCTTTGATTACCCTACTGATACTATCTTGCCTGGAATGAGATTCGGCTTGAACCGGGAAACTGGTTTAAATCAATTCCTAACTTCATGGAAATCAAGT GATGATCCGGCACCTGGAGATTTCTCATTTGGGCTTAACCCAAATGGTTCACCTCAGTACTTCTTGTATAGGAATCTGACTCCATTTTGGCGAGTTGGAC CGTGGAACGGTAGGAGCCTGAGTGGTACACCTGATATATCAACCGGGGTCAAGAGCAATCGTCCAGACTTCAGCAATGAGGCTGGTTTTCTCAACTATAG TTTTGTCAGCAACAAACAAGGAACTTACATCACTTTCTATCTAAGAAACACTTCTGTTTTCTCTTCAATGGTGCTAGAACCTACTGGCATAGTTAAGCGA GTCACATGGCGTGAAGATAGCCAGGATTGGGCTTTGTTTTGGCTTGAACCTGATGGCTCATGTGATGTTTACGCAAACTGTGGCTCTTATTCTATATGCA ACTTCAACAACGCGATAAAGTGCTCATGCTTACCAGGATTTGAACCTCTTTCACCTCATGATTGGCATACATGTGTAGAGAAGAGAAAATTCCAATGTGG GAAGGGTGCAGGAGAAGGGTTCTTGAAGATAGCTAATGTGAAGATTCCTGATGCTACCAGGACCCGCGCTTACACGAATTTGAGCTTGAAAGAGTGTGAA ATGGAGTGCTTGAGGAGCTGTAATTGCAGTGGATATGCTAGTCTAGATATAAATAATGAGGGACAAGGCTGTTTAGCTTGGTATGGTGAGCTAAATGACA TGCAGCAATATACTGATGAGGGACAGGACTTTCATCTGCGAGTGGAGGCAGGGGAGCTTGCTGCATATGCAAAGAACAGCTCAAAATCCTCCACGGCTAC GAATTGGATAGTTAGAGTTATCGTTTTGTTTGCTATTGCGTTGCTGCTTCTTTTTGTATCAATTTACCTTCACTCTCGAAAGAAACGTGCGAGAAAAGGC CATCTAGAGAAGCGAAGGAGATGTGAGTTGCTATCATTGGATCCAGAAAATCGCATGTCAAACTCTGAGGACCTTACGAGCGCCCATGAGTGCGAAGAGA ATTTAAATATAACCTTCTATGATCTAGGCACCATCAGAGCTGCAACAGACAATTTTTCTTCTGAAAGAAAACTTGGAGAAGGTGGATTTGGTCCTGTCTA CAAGGGAAAGCTATCAAATGGAAAGGAGGTAGCTATTAAAAGGCTATCGAAGAGCTCAGAACAAGGAATAGATGAGTTTAAGAATGAAGTTTTGTTAATT GCAAAACTTCAGCACAGAAATCTTGTCAAACTTCTTGGCTGTTGCATTGAAGCAGAAGAAAAGATGCTGATCTATGAATACATGCCTAACAAAAGCCTGG ACTACCTTATTTTTGATCAGTCAAGAAAAGCATCTCTGGAATGGGAAAAGCGCTTTGAAATCATAATGGGCATTGCTCGAGGGATCCTATATCTTCATCA GGACTCTAGGTTAAGAATCATCCATAGAGACTTGAAAACAAGCAATGTTCTTCTAGATGAGGAGATGAATGCCAAAATTTCAGATTTCGGGACTGCAAGG ATCTTTTGTGGGAACCAAAACCAAGCAAATACAAACAGAGTCGTCGGCACATTTGGATACATGTCACCAGAGTATGCTCTGGATGGCCTCTTCTCTGTAA AATCCGACGTCTTCAGTTTTGGAGTCTTACTTCTGGAGATCATTAGTGGTAGGAAGAACATAGGTTTTTTCAAAGAAGATCTGTCCTCAAATTTGATACG ATATACATGGAATCTGTGGAAAGATGGAAACGCCTTGGAGATGATGGACTTATCAATCAGGCAATCATGTCCTAGTTCAGAAGTACTGCGGTGCATTCAT GTTGGTCTATTGTGTGTGCAAGATTGTGCAGCAAACAGGCCAACAATGTCCGAAATTATTTTCATGTTGAGCACTGACACTACTCTTCCATCTCCAACAC AACCTACCTTTTCAATCACGAGAAGTCAGAATGATCCCAGTTTTCCTGCTATAGACACAAGTTCTTCAGTGAATCAGGTGACAATCAGTCTTGTGGATGC TCGATAA
AA sequence Show only first row Show all	>Potri.011G035600.1 pacid=42781366 polypeptide=Potri.011G035600.1.p locus=Potri.011G035600 ID=Potri.011G035600.1.v4.1 annot-version=v4.1 MSLSKILSLIIHASMDTKRTLFSNAIVLFMASILFASCCGIDIINQTHFISDSKNESLISSIGNFKLGFFSPGNSPSRYVGIWFNKVSKQTVVWVANREI PLKKSAGIFKIAADGNLAVVDSKGRTPLWSTNISMPNANSSAKLLPSGNLVLVVKNNSGNSESIVWQSFDYPTDTILPGMRFGLNRETGLNQFLTSWKSS DDPAPGDFSFGLNPNGSPQYFLYRNLTPFWRVGPWNGRSLSGTPDISTGVKSNRPDFSNEAGFLNYSFVSNKQGTYITFYLRNTSVFSSMVLEPTGIVKR VTWREDSQDWALFWLEPDGSCDVYANCGSYSICNFNNAIKCSCLPGFEPLSPHDWHTCVEKRKFQCGKGAGEGFLKIANVKIPDATRTRAYTNLSLKECE MECLRSCNCSGYASLDINNEGQGCLAWYGELNDMQQYTDEGQDFHLRVEAGELAAYAKNSSKSSTATNWIVRVIVLFAIALLLLFVSIYLHSRKKRARKG HLEKRRRCELLSLDPENRMSNSEDLTSAHECEENLNITFYDLGTIRAATDNFSSERKLGEGGFGPVYKGKLSNGKEVAIKRLSKSSEQGIDEFKNEVLLI AKLQHRNLVKLLGCCIEAEEKMLIYEYMPNKSLDYLIFDQSRKASLEWEKRFEIIMGIARGILYLHQDSRLRIIHRDLKTSNVLLDEEMNAKISDFGTAR IFCGNQNQANTNRVVGTFGYMSPEYALDGLFSVKSDVFSFGVLLLEIISGRKNIGFFKEDLSSNLIRYTWNLWKDGNALEMMDLSIRQSCPSSEVLRCIH VGLLCVQDCAANRPTMSEIIFMLSTDTTLPSPTQPTFSITRSQNDPSFPAIDTSSSVNQVTISLVDAR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G21380		ARK3	receptor kinase 3 (.1)		Potri.011G035600 [exp]	0	1
AT1G67730		ATKCR1, YBR159,...	beta-ketoacyl reductase 1 (.1)		Potri.008G181700 [exp]	4.00	0.8973
AT5G46330		FLS2	FLAGELLIN-SENSITIVE 2, Leucine...		Potri.011G068500 [exp]	9.74	0.8785
AT1G48780			unknown protein		Potri.015G045700 [exp]	11.87	0.8888
AT1G05170			Galactosyltransferase family p...		Potri.014G153700 [exp]	12.64	0.8803
AT5G11190	AP2_ERF	SHN2, SHN3	shine2, Integrase-type DNA-bin...		Potri.006G253800 [exp]	12.72	0.7791
AT5G42350			Galactose oxidase/kelch repeat...		Potri.002G007700 [exp]	14.42	0.8654
AT2G27060			Leucine-rich repeat protein ki...		Potri.004G197500 [exp]	22.60	0.8767
AT1G63910	MYB	AtMYB103	myb domain protein 103 (.1)		Potri.003G132000 [exp]	23.36	0.8780
AT1G67370		ASY1, ATASY1	ASYNAPTIC 1, DNA-binding HORMA...		Potri.001G055201 [exp]	26.15	0.8573
AT5G18590			Galactose oxidase/kelch repeat...		Potri.008G214900 [exp]	29.05	0.7652

Compare expression of checked genes

Potri.011G035600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.