Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11340 743 / 0 S-locus lectin protein kinase family protein (.1) AT1G11410 720 / 0 S-locus lectin protein kinase family protein (.1) AT4G21380 673 / 0 ARK3 receptor kinase 3 (.1) AT1G65790 638 / 0 ARK1 receptor kinase 1 (.1) AT4G27290 636 / 0 S-locus lectin protein kinase family protein (.1) AT1G65800 631 / 0 ARK2 receptor kinase 2 (.1) AT4G21390 603 / 0 B120 S-locus lectin protein kinase family protein (.1) AT1G11330 600 / 0 S-locus lectin protein kinase family protein (.1.2) AT1G11300 592 / 0 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) AT1G61610 588 / 0 S-locus lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G028300 [exp] 1110 / 0 AT1G11340 742 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G036400 [exp] 1071 / 0 AT1G11340 726 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G036600 [exp] 1063 / 0 AT1G11340 741 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G035800 [exp] 1054 / 0 AT1G11340 705 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G036100 [exp] 1053 / 0 AT1G11340 719 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G028466 [exp] 820 / 0 AT1G11340 884 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G028701 [exp] 819 / 0 AT1G11340 899 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G028600 [exp] 814 / 0 AT1G11340 875 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G035600 [exp] 703 / 0 AT4G21380 711 / 0.0 receptor kinase 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024064 [exp] 925 / 0 AT1G11340 735 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10041680 [exp] 899 / 0 AT1G15520 1646 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10007604 [exp] 841 / 0 AT1G11340 694 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10013244 [exp] 820 / 0 AT1G11340 669 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10013246 [exp] 820 / 0 AT1G11340 678 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10034637 [exp] 817 / 0 AT1G11340 660 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10013245 [exp] 816 / 0 AT1G11300 955 / 0.0 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) Lus10030767 [exp] 808 / 0 AT1G11340 670 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10018402 [exp] 803 / 0 AT1G11340 691 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10030768 [exp] 797 / 0 AT1G11340 667 / 0.0 S-locus lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00954 [poplar] [flax] S_locus_glycop S-locus glycoprotein domain PF01453 [poplar] [flax] B_lectin D-mannose binding lectin CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0168 [poplar] [flax] PAN PF08276 [poplar] [flax] PAN_2 PAN-like domain
Representative CDS sequence Show only first row Show all	>Potri.011G035700.2 pacid=42780282 polypeptide=Potri.011G035700.2.p locus=Potri.011G035700 ID=Potri.011G035700.2.v4.1 annot-version=v4.1 ATGAAGGCAGACAGACTGTTTCTGTATTCTTTGCTTTTGATTCTCCAATTCATTTTTTGTGTTTCCAAGGACTCCATAAACACCACCCAAATCATAAGAG ATGGTGATGTTTTGATTTCCAGAGGAAATAATTTTGCGTTAGGATTTTTCAGTCCAGGAAAATCTAGCAATAGATATCTTGGGATTTGGTACCATAAATT ACCTGAACAAACAGTAGTGTGGGTAGCAAACAGGAACCATCCAATCATTGGCTCCTCAGGGGTTTTGTCATTTGATGAATATGGAAACCTCAGTCTCTAT AGTGACGGCAATCGAAATGTTTCAGTATGGTCTGCAAATGTTTCAGGGGAGGAAGCTGATACTTCTGTAGCTCAGCTTTTGGATTCAGGAAACTTTGTTT TGGTTCAAGAAAGTGGAAATATTTTATGGCAAAGCTTTGATTATCCAACACACTATGTATTGCCAGGAATGAAACTTGGGCTGGATCTGAAAACAGGTCT TGACCGGTTCCTGACATCGTGGATATCAGCTGATGACCCTGGGATTGGAGACTACTCATATAGGGTCAACCCTAGTGGTTCACCACAAATCTTTCTCTAC AAAGGCCAAAAACGTGTCTGGCGAACTTCCCCTTGGCCTTGGAGACCACAGAGGAGGTCATACAACTCTCAATTTGTCAATGATCAAGACGAGATAGGCA TGACAACTGCTATCCCTGCTGAGGATTCTGTTATGGTGAGACTACTGGTGGATCATTCAGGATTTGTTAAGGCAGTAAAATGGCATGAAAGCGATGGCCA GTGGAAGGAGACGTGGAGGGCACCACGGTCTAAATGCGACTCGTATGGATGGTGTGGTCCGTATAGTACTTGTGAACCTACTGATGCTTATAAATTCGAA TGTTCTTGTTTGCCTGGGTTCGAGCCCAGGAATCCAAGTGATTGGTTGCTGAGAAATGGGTCTACCGGTTGTGTCAGGAAGCGGTTAGAGTCTTCATCTG TATGCAGGAATGGAGAAGGGTTTCTGAAGGTAGAAATTGTATTTCTTCCTGATACTTCTGCAGCAGTCTGGGTGGATATGGATATGAGTCATGCAGACTG TGAAAGGGAATGCAAGAGGAACTGTTCATGCTCTGCATACGCAAGTGTAGATATTCCAGACAAAGGCACTGGTTGTTTGACATGGTATGGCGAGTTAGTA GATGCAGTTCGATATAACATGAGTGACAGATATGATCTGTATGTTCGAGTCGATGCACTTGAATTAGCTGAGAATGCGAGGAAATCAAATGATTATCTTG CAAAGGAGATTCCTGCCATTCTAATTCCCACTGTTTTTTCAGCTTTGCTGGTCATTAGCATAGTAGCTTATTTTTGGCGTAAGAGGAGAGGAAATAAAGG TTCCTGGGTGGCAAATGAGCTCCGGAGAAGTAGCAGTGATCAAGATTTGCCATATTTCAAACTCAGCACAATATCTGCTGCAACCAACAATTTTTCTCCA GATAACAAACTTGGACAAGGAGGTTTCGGCTCAGTCTATAAGGGTGAGCTACCTGATCGTGAGAAGATTGCTGTAAAGAGACTATCAAACAATTCAAGAC AAGGGATAGAAGAATTTACAAATGAAGTTAAAGTAATTGCAAAGCTTCAGCACCGAAATCTTGTGAAACTTGTAGGCTGTTGCATTCAGGGAGGAGAACA AATGCTAGTTTATGAGTACATGCCAAACAAGAGCTTGGATTCATTTCTTTTCAATGAAACAAGAAAGTTGTTCTTGGATTGGAGCAAAAGGTTTGACATT ATTGTTGGTATCGCTCGTGGAATCCTATATCTTCACCAGGACTCAAGGTTGAGAATCATTCACAGGGACTTGAAATGCAGCAACATTCTATTGGATGCAG AGATGAATCCAAAAATCTCAGATTTTGGAATTGCTAGAATATTCAAAAGCGATCAAATTCTGGACAACACAAAAAGAGTTGTGGGAACATATGGCTATAT GTCACCTGAGTACGCAGTGTTTGGAAAATTCTCGTTGAAATCAGATGTGTTTAGTTTTGGGGTCATGTTACTGGAGATTGTAAGTGGAAAGAAGAACAAC GAATTTAATCCTCAAAATCCTGCCCAGACCTTGATTGGACTAGTGTGGGGGCTGTGGAAGGAAGACAGAGCATTGGAGATAGTCGATTCATCACTTCAGG TGCTGTATCATCCTCAAGAAGCTTTGAAATGCATTAAAATCGGTCTTTTGTGTGTGCAAGAAGATGCCATTGAAAGACCATCCATGTTAGCAGTTGTTTT CATGTTTAATAGTAGCGAAACAACCATTCCTTCTCCGAAACAGCCTGCTTTCACTTTCAGAGAACCTTGCATTAGTCCTCACGTAGCAGTGTCTGGCTGT TTGAATGTGACAATGACTGACATTGAAGGTCGTTAG
AA sequence Show only first row Show all	>Potri.011G035700.2 pacid=42780282 polypeptide=Potri.011G035700.2.p locus=Potri.011G035700 ID=Potri.011G035700.2.v4.1 annot-version=v4.1 MKADRLFLYSLLLILQFIFCVSKDSINTTQIIRDGDVLISRGNNFALGFFSPGKSSNRYLGIWYHKLPEQTVVWVANRNHPIIGSSGVLSFDEYGNLSLY SDGNRNVSVWSANVSGEEADTSVAQLLDSGNFVLVQESGNILWQSFDYPTHYVLPGMKLGLDLKTGLDRFLTSWISADDPGIGDYSYRVNPSGSPQIFLY KGQKRVWRTSPWPWRPQRRSYNSQFVNDQDEIGMTTAIPAEDSVMVRLLVDHSGFVKAVKWHESDGQWKETWRAPRSKCDSYGWCGPYSTCEPTDAYKFE CSCLPGFEPRNPSDWLLRNGSTGCVRKRLESSSVCRNGEGFLKVEIVFLPDTSAAVWVDMDMSHADCERECKRNCSCSAYASVDIPDKGTGCLTWYGELV DAVRYNMSDRYDLYVRVDALELAENARKSNDYLAKEIPAILIPTVFSALLVISIVAYFWRKRRGNKGSWVANELRRSSSDQDLPYFKLSTISAATNNFSP DNKLGQGGFGSVYKGELPDREKIAVKRLSNNSRQGIEEFTNEVKVIAKLQHRNLVKLVGCCIQGGEQMLVYEYMPNKSLDSFLFNETRKLFLDWSKRFDI IVGIARGILYLHQDSRLRIIHRDLKCSNILLDAEMNPKISDFGIARIFKSDQILDNTKRVVGTYGYMSPEYAVFGKFSLKSDVFSFGVMLLEIVSGKKNN EFNPQNPAQTLIGLVWGLWKEDRALEIVDSSLQVLYHPQEALKCIKIGLLCVQEDAIERPSMLAVVFMFNSSETTIPSPKQPAFTFREPCISPHVAVSGC LNVTMTDIEGR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G11340			S-locus lectin protein kinase ...		Potri.011G035700 [exp]	0	1
AT3G23160			Protein of unknown function (D...		Potri.010G074000 [exp]	1.41	0.8943
					Potri.001G255700 [exp]	4.24	0.8355
AT5G45380		ATDUR3	DEGRADATION OF UREA 3, solute:...		Potri.003G104000 [exp]	4.24	0.8793
AT5G50400		ATPAP27, PAP27	ARABIDOPSIS THALIANA PURPLE AC...		Potri.015G095900 [exp]	4.24	0.8534	Pt-PPD3.1
AT4G16120		ATSEB1, COBL7	ARABIDOPSIS THALIANA SEC61 BET...		Potri.014G125300 [exp]	5.00	0.8596
AT1G20780		ATPUB44, SAUL1	ARABIDOPSIS THALIANA PLANT U-B...		Potri.001G024600 [exp]	8.00	0.8655
AT4G10770		ATOPT7	ARABIDOPSIS THALIANA OLIGOPEPT...		Potri.007G056900 [exp]	11.22	0.8492
AT4G01720	WRKY	ATWRKY47, WRKY4...	WRKY family transcription fact...		Potri.002G186600 [exp]	23.95	0.8163	Pt-WRKY47.2
AT5G64550			loricrin-related (.1)		Potri.003G023300 [exp]	28.49	0.7820
AT5G01950			Leucine-rich repeat protein ki...		Potri.016G140300 [exp]	28.61	0.8166

Compare expression of checked genes

Potri.011G035700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.