Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11340 706 / 0 S-locus lectin protein kinase family protein (.1) AT1G11410 677 / 0 S-locus lectin protein kinase family protein (.1) AT4G21380 638 / 0 ARK3 receptor kinase 3 (.1) AT1G65790 625 / 0 ARK1 receptor kinase 1 (.1) AT1G65800 613 / 0 ARK2 receptor kinase 2 (.1) AT4G27290 607 / 0 S-locus lectin protein kinase family protein (.1) AT1G61610 595 / 0 S-locus lectin protein kinase family protein (.1) AT4G21390 583 / 0 B120 S-locus lectin protein kinase family protein (.1) AT1G11300 577 / 0 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) AT4G27300 558 / 0 S-locus lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G036400 [exp] 1428 / 0 AT1G11340 726 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G036600 [exp] 1396 / 0 AT1G11340 741 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G036100 [exp] 1391 / 0 AT1G11340 719 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G035700 [exp] 1021 / 0 AT1G11340 743 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G028300 [exp] 1002 / 0 AT1G11340 742 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G028701 [exp] 799 / 0 AT1G11340 899 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G028466 [exp] 788 / 0 AT1G11340 884 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G028600 [exp] 781 / 0 AT1G11340 875 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G035600 [exp] 696 / 0 AT4G21380 711 / 0.0 receptor kinase 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024064 [exp] 900 / 0 AT1G11340 735 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10041680 [exp] 855 / 0 AT1G15520 1646 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10007604 [exp] 796 / 0 AT1G11340 694 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10018402 [exp] 767 / 0 AT1G11340 691 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10007610 [exp] 766 / 0 AT1G11410 693 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10013246 [exp] 765 / 0 AT1G11340 678 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10034637 [exp] 754 / 0 AT1G11340 660 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10018406 [exp] 752 / 0 AT1G11340 694 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10030767 [exp] 751 / 0 AT1G11340 670 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10013910 [exp] 748 / 0 AT1G11340 628 / 0.0 S-locus lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00954 [poplar] [flax] S_locus_glycop S-locus glycoprotein domain PF01453 [poplar] [flax] B_lectin D-mannose binding lectin CL0168 [poplar] [flax] PAN PF08276 [poplar] [flax] PAN_2 PAN-like domain
Representative CDS sequence Show only first row Show all	>Potri.011G035800.1 pacid=42781390 polypeptide=Potri.011G035800.1.p locus=Potri.011G035800 ID=Potri.011G035800.1.v4.1 annot-version=v4.1 ATGGAAGCTGAAAAACTGTTCCTGCTTTTTTCTCTTTTAATGCTCCATTTCTCATCTTGTACATCCCTAGACTCCTTAAAGACGAACCAAACCATTAAAG AAGGTGACGTTCTTATCTCCGAAGGAAATAATTTTGCACTAGGATTTTTCAGTCCAGGTAGTTCTAGCAATAGATATCTTGGAATTTGGTACCATAAAGT ACCAGAACAAACTGTGGTGTGGGTTGCAAACAGGAACGATCCAATCATTGGTTCCTCAGGATTTCTCTTTGTAGACCAATATGGTAACCTCGTTCTCTAT GGTAACGATGACCAAAAGCTTCCTGTGTGGTCTACAAATGTTTCAGTGGAAGAAAATGATACTTGTGCAGCTCAACTCTTGGATTCAGGAAATTTGATAT TGGTCAGGAAAAGAAGCAGAAAAACAGTATGGCAAAGCTTCGATTATCCTACGAACATCCTGCTTCCTGGAATGAAACTGGGGCTGGATCGAAAATTAGG AACTGATCGGTTCCTAACATCATGGAGATCAGCTGATGACCCTGGGATTGGAGACTTTTCAGTTAGGATCAACCCAAATGGCTCACCACAATTCTTTCTC TATACTGGTACAAAGCCAATTAGTAGATCTCCCCCTTGGCCAATTAGTATAAGTCAGATGGGCTTATACAAAATGGTTTTTGTAAATGATCCAGATGAAA TATACAGTGAATTAACAGTTCCTGATGGTTATTATCTGGTAAGACTAATAGTGGATCATTCAGGACTTTCAAAGGTGTTAACTTGGCGAGAAAGTGATGG TAAGTGGAGGGAATACTCGAAGTGCCCTCAGTTACAGTGCGACTATTATGGATACTGTGGTGCTTATAGTACGTGTGAACTTGCCAGTTATAATACCTTT GGATGTGCCTGTTTACCTGGGTTCGAGCCCAAGTACCCAATGGAATGGTCTATGAGAAATGGGTCCGGTGGTTGTGTCAGGAAGCGGCTACAGACATCTT CGGTGTGCGATCATGGAGAAGGGTTTGTGAAGGTAGAAAATGTAATGCTTCCGGACACTACGGCTGCAGCTTGGGTGGACACGAGCAAGAGTCGTGCAGA CTGTGAGCTGGAATGCAATAGCAATTGTTCATGCTCTGCATACGCAGTCATTGTGATTCCCGGAAAAGGGGATGGTTGTTTGAATTGGTACAAGGAATTA GTAGACATTAAATATGATAGGAGGAGTGAAAGTCATGATCTGTATGTTCGTGTTGATGCATATGAATTAGCTGATACTAAAAGGAAGTCAAATGATTCTC GTGAAAAAACGATGCTGGCCGTTTTAGCACCATCAATTGCATTCTTGTGGTTTCTCATTAGCCTGTTTGCTTCTTTGTGGTTCAAGAAGAGAGCCAAAAA AGGTACTGAACTGCAGGTAAACAGCACTTCTACTGAATTGGAATATTTCAAGCTCAGCACCATAACGGCGGCCACTAACAATTTCTCTTCAGCTAACAAA GTCGGGCAAGGTGGTTTTGGCTCTGTTTATAAGGGTCTGCTAGCTAATGCAAAGGAGGTTGCAATAAAAAGGTTATCTAGAAGTTCAGGACAAGGAACAG AAGAATTTAAAAATGAAGTTACGGTAATTGCAAGGCTTCAACACAGGAATCTAGTGAAACTTCTAGGTTATTGCCTTCAGGATGGAGAAAAAATGTTAAT CTATGAATACTTGCCAAACAAAAGCTTGGACTCGTTTCTTTTCGATGAAAGCAGAAGATTGTTATTGGATTGGCGAAAACGCTTTGATATTATTGTTGGA ATAGCTCGTGGGATTTTATATCTTCACCAGGACTCCAGGCTGAGAATCATTCACAGGGATTTAAAATGTAGCAACATTCTATTGGATGCAGAGATGAACC CAAAAATATCAGATTTTGGAATTGCAAAAATATTTGAAGGCAACCAAACTGAAGATAGGACAAGGAGAGTTGTAGGAACGTATGGCTACATGTCGCCAGA ATATGTTGTGTTTGGAAACTTTTCCGCAAAATCAGATGTTTTCAGTTTTGGGGTCATGTTGCTAGAGATTGTTAGTGGCAAGAAGAACAATATATTTTAT CAACAGGATCCTCCTTTGACCTTGATTGGATATGTTTGGGAATTATGGAGACAAGACAAAGCATTGGAGATAGTTGATCCATCACTGAAGGAGTTGTATC ATCCACGTGAAGCCTTGAAATGCTTACAAATTGGTCTACTGTGCGTGCAAGAAGATGCCACGGACAGACCATCTATGTTAGCGGTTGTTTTTATGTTGAG TAACGAAACAGAGATTCCTTCTCCAAAACAACCTGCATTCCTCTTTAGAAAATCTGACAATAATCCTGATATAGCATTAGACGTAGAAGATGGACATTGT TCTCTAAATGAGGTGACAATTACTGAAATTGCCTGTCGCTGA
AA sequence Show only first row Show all	>Potri.011G035800.1 pacid=42781390 polypeptide=Potri.011G035800.1.p locus=Potri.011G035800 ID=Potri.011G035800.1.v4.1 annot-version=v4.1 MEAEKLFLLFSLLMLHFSSCTSLDSLKTNQTIKEGDVLISEGNNFALGFFSPGSSSNRYLGIWYHKVPEQTVVWVANRNDPIIGSSGFLFVDQYGNLVLY GNDDQKLPVWSTNVSVEENDTCAAQLLDSGNLILVRKRSRKTVWQSFDYPTNILLPGMKLGLDRKLGTDRFLTSWRSADDPGIGDFSVRINPNGSPQFFL YTGTKPISRSPPWPISISQMGLYKMVFVNDPDEIYSELTVPDGYYLVRLIVDHSGLSKVLTWRESDGKWREYSKCPQLQCDYYGYCGAYSTCELASYNTF GCACLPGFEPKYPMEWSMRNGSGGCVRKRLQTSSVCDHGEGFVKVENVMLPDTTAAAWVDTSKSRADCELECNSNCSCSAYAVIVIPGKGDGCLNWYKEL VDIKYDRRSESHDLYVRVDAYELADTKRKSNDSREKTMLAVLAPSIAFLWFLISLFASLWFKKRAKKGTELQVNSTSTELEYFKLSTITAATNNFSSANK VGQGGFGSVYKGLLANAKEVAIKRLSRSSGQGTEEFKNEVTVIARLQHRNLVKLLGYCLQDGEKMLIYEYLPNKSLDSFLFDESRRLLLDWRKRFDIIVG IARGILYLHQDSRLRIIHRDLKCSNILLDAEMNPKISDFGIAKIFEGNQTEDRTRRVVGTYGYMSPEYVVFGNFSAKSDVFSFGVMLLEIVSGKKNNIFY QQDPPLTLIGYVWELWRQDKALEIVDPSLKELYHPREALKCLQIGLLCVQEDATDRPSMLAVVFMLSNETEIPSPKQPAFLFRKSDNNPDIALDVEDGHC SLNEVTITEIACR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G11340			S-locus lectin protein kinase ...		Potri.011G035800 [exp]	0	1
AT1G11340			S-locus lectin protein kinase ...		Potri.011G036400 [exp]	1.41	0.9699
AT4G27290			S-locus lectin protein kinase ...		Potri.011G035913 [exp]	2.44	0.9569
AT5G18130			unknown protein		Potri.013G057200 [exp]	3.46	0.9407
AT1G11340			S-locus lectin protein kinase ...		Potri.011G036532 [exp]	4.00	0.9223
AT3G62550			Adenine nucleotide alpha hydro...		Potri.002G196700 [exp]	4.58	0.9236
AT1G69040		ACR4	ACT domain repeat 4 (.1.2)		Potri.012G102200 [exp]	5.47	0.9288
AT5G53450		ORG1	OBP3-responsive gene 1 (.1.2)		Potri.015G017100 [exp]	5.83	0.9016
AT1G11340			S-locus lectin protein kinase ...		Potri.011G036466 [exp]	7.07	0.8864
AT5G49760			Leucine-rich repeat protein ki...		Potri.004G231200 [exp]	9.48	0.9201
AT1G24490		ALB4, ARTEMIS	ARABIDOPSIS THALIANA ENVELOPE ...		Potri.008G182000 [exp]	9.79	0.9180

Compare expression of checked genes

Potri.011G035800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.