Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23270 397 / 1e-133 CRK19 cysteine-rich RLK (RECEPTOR-like protein kinase) 19 (.1) AT1G65800 398 / 6e-132 ARK2 receptor kinase 2 (.1) AT1G65790 398 / 7e-132 ARK1 receptor kinase 1 (.1) AT1G11340 399 / 1e-131 S-locus lectin protein kinase family protein (.1) AT4G23130 391 / 2e-131 RLK6, CRK5 RECEPTOR-LIKE PROTEIN KINASE 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.2) AT4G23180 390 / 1e-130 RLK4, CRK10 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) AT4G05200 389 / 3e-130 CRK25 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) AT4G23140 388 / 6e-130 RLK5, CRK6 cysteine-rich RLK (RECEPTOR-like protein kinase) 6 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 6 (.2) AT4G03230 396 / 2e-129 S-locus lectin protein kinase family protein (.1) AT4G23310 389 / 1e-128 CRK23 cysteine-rich RLK (RECEPTOR-like protein kinase) 23 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G036400 [exp] 695 / 0 AT1G11340 726 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G036100 [exp] 686 / 0 AT1G11340 719 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G035800 [exp] 683 / 0 AT1G11340 705 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G036466 [exp] 678 / 0 AT1G11340 411 / 1e-136 S-locus lectin protein kinase family protein (.1) Potri.011G036600 [exp] 676 / 0 AT1G11340 741 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G035700 [exp] 509 / 1e-175 AT1G11340 743 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G028300 [exp] 497 / 1e-170 AT1G11340 742 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G028701 [exp] 444 / 3e-149 AT1G11340 899 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G028466 [exp] 442 / 3e-149 AT1G11340 884 / 0.0 S-locus lectin protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024064 [exp] 471 / 3e-160 AT1G11340 735 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10006745 [exp] 420 / 5e-142 AT1G11340 774 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10018402 [exp] 421 / 1e-140 AT1G11340 691 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10018406 [exp] 419 / 3e-140 AT1G11340 694 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10041679 [exp] 408 / 7e-140 AT1G11340 417 / 1e-137 S-locus lectin protein kinase family protein (.1) Lus10007610 [exp] 418 / 1e-139 AT1G11410 693 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10041680 [exp] 434 / 9e-138 AT1G15520 1646 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10007604 [exp] 413 / 1e-137 AT1G11340 694 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10033752 [exp] 395 / 5e-137 AT4G03230 497 / 6e-169 S-locus lectin protein kinase family protein (.1) Lus10006746 [exp] 405 / 1e-134 AT1G11340 836 / 0.0 S-locus lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.011G035850.2 pacid=42782379 polypeptide=Potri.011G035850.2.p locus=Potri.011G035850 ID=Potri.011G035850.2.v4.1 annot-version=v4.1 ATGCTGGCCATTTTAGTACCATCAATTGCATCAAATGTTAACTGCTTATTTGTGGCTCAAGAAGAGGGCAAAACAAGGTTCAAGAAGAGAGCCAAAAAAG GTTCTGAACTGCAGGTAAACAGCACTTCTACTGAATTGAAATATTTCAAGCTCAGCACCACAACGGCGGCCACAAACAATTTCTCTCCAGCTAACAAACT CGGGCAAGGTGGTTTTGGCTCTGTTTATAAGGGTCTGCTAGCTAATGGGCTGGAGGTTGCAATAAAAAGGTTATCTAGAAGTTCAAGACAAGGAACAGAA GAATTTAAAAATGAAGTTATGGTAATTGCAATGCTTCAACACAGGAATCTGGTGAAACTTCTAGGTTATTGCACTCAGGATGGAGAACAAATCTTAATCT ATGAATACTTGCCGAACAAAAGCTTGGACTCGATTCTTTTCCAAATAATTGTTTCAACAGATGAAACAAGAAGATTGTTATTGGATTGGCGAAAACGCTT TGATATTATTGTTGGAATAGCTCGTGGGATTTTATATCTTCACCAAGACTCCAGGTTGAGAATCATTCACAGGGATTTAAAATGCAGCAACATTCTATTG GATGCAGAGATGAACCCAAAAATATCAGATTTTGGAATGGCAAAAATATTTGAAGGCAACCAAACTGAAGATAGGACAAGGAGAGTTGTGGGAACATATG GCTACATGTCACCAGAATATGCTGTGTTTGGAAACTTTTCTGTAAAATCAGATGTTTTCAGTTTTGGGGTCATGTTGTTAGAGATTGTGAGTGGCAAGAA GAACAACAGATTTTATCAACGGAATCCTCCCTTGACCTTGATTGGATATGTGTGGGAATTATGGAGAGAAGACAAAGCATTGGAGATAGTTGATCCATCA CTGAAGGAGTTGTATCATCCGCGTGAAGCCTTGAAATGCATACAAATTGGTCTACTGTGCGTGCAAGAAGATGCCACGGACAGACCATCTATGTTGGCAG TTGTTTTTATGTTGAGTAACGAAACAGAGATTCCTTCTCCAGAACAACCTGCATTCCTCTTTAGAAAATCTGACAATAATCCTGATATAGCATTAGACGT AGAAGATGGACAGTGTTCTCTAAATGAGGTGACAATTACTGAAATTGCCTGTCGCTGA
AA sequence Show only first row Show all	>Potri.011G035850.2 pacid=42782379 polypeptide=Potri.011G035850.2.p locus=Potri.011G035850 ID=Potri.011G035850.2.v4.1 annot-version=v4.1 MLAILVPSIASNVNCLFVAQEEGKTRFKKRAKKGSELQVNSTSTELKYFKLSTTTAATNNFSPANKLGQGGFGSVYKGLLANGLEVAIKRLSRSSRQGTE EFKNEVMVIAMLQHRNLVKLLGYCTQDGEQILIYEYLPNKSLDSILFQIIVSTDETRRLLLDWRKRFDIIVGIARGILYLHQDSRLRIIHRDLKCSNILL DAEMNPKISDFGMAKIFEGNQTEDRTRRVVGTYGYMSPEYAVFGNFSVKSDVFSFGVMLLEIVSGKKNNRFYQRNPPLTLIGYVWELWREDKALEIVDPS LKELYHPREALKCIQIGLLCVQEDATDRPSMLAVVFMLSNETEIPSPEQPAFLFRKSDNNPDIALDVEDGQCSLNEVTITEIACR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G23270		CRK19	cysteine-rich RLK (RECEPTOR-li...		Potri.011G035850 [exp]	0	1
AT4G28990			RNA-binding protein-related (....		Potri.018G083100 [exp]	7.74	0.8128
AT5G03860		MLS	malate synthase (.1.2)		Potri.015G092000 [exp]	9.59	0.8179
AT5G36930			Disease resistance protein (TI...		Potri.011G077260 [exp]	25.41	0.7806
AT1G01770			unknown protein		Potri.002G157400 [exp]	26.94	0.6667
AT4G27190			NB-ARC domain-containing disea...		Potri.001G433700 [exp]	27.49	0.7799
AT2G02570			nucleic acid binding;RNA bindi...		Potri.004G229200 [exp]	27.82	0.7530
AT1G47530			MATE efflux family protein (.1...		Potri.002G132300 [exp]	29.56	0.7774
AT1G15060			Uncharacterised conserved prot...		Potri.012G053700 [exp]	30.72	0.6689
AT5G24090		ATCHIA	chitinase A (.1)		Potri.014G092800 [exp]	30.98	0.7275	Pt-CHI3.5
AT4G04880			adenosine/AMP deaminase family...		Potri.011G000100 [exp]	31.74	0.7980

Compare expression of checked genes

Potri.011G035850 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.