Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11340 413 / 3e-137 S-locus lectin protein kinase family protein (.1) AT4G23180 401 / 3e-135 RLK4, CRK10 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) AT4G23270 390 / 2e-131 CRK19 cysteine-rich RLK (RECEPTOR-like protein kinase) 19 (.1) AT4G23140 389 / 3e-130 RLK5, CRK6 cysteine-rich RLK (RECEPTOR-like protein kinase) 6 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 6 (.2) AT4G11470 388 / 4e-130 CRK31 cysteine-rich RLK (RECEPTOR-like protein kinase) 31 (.1) AT4G05200 388 / 4e-130 CRK25 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) AT4G21390 392 / 7e-130 B120 S-locus lectin protein kinase family protein (.1) AT4G03230 396 / 1e-129 S-locus lectin protein kinase family protein (.1) AT4G23230 381 / 1e-129 CRK15 cysteine-rich RLK (RECEPTOR-like protein kinase) 15 (.1) AT1G11410 390 / 5e-129 S-locus lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G036600 [exp] 701 / 0 AT1G11340 741 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G036100 [exp] 693 / 0 AT1G11340 719 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G036400 [exp] 688 / 0 AT1G11340 726 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G035800 [exp] 688 / 0 AT1G11340 705 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G035850 [exp] 678 / 0 AT4G23270 397 / 6e-134 cysteine-rich RLK (RECEPTOR-like protein kinase) 19 (.1) Potri.011G035700 [exp] 516 / 3e-178 AT1G11340 743 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G028300 [exp] 508 / 6e-175 AT1G11340 742 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G028466 [exp] 437 / 2e-147 AT1G11340 884 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G028600 [exp] 436 / 1e-146 AT1G11340 875 / 0.0 S-locus lectin protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024064 [exp] 460 / 4e-156 AT1G11340 735 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10018402 [exp] 427 / 2e-143 AT1G11340 691 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10006745 [exp] 421 / 8e-143 AT1G11340 774 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10018406 [exp] 422 / 1e-141 AT1G11340 694 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10007610 [exp] 419 / 3e-140 AT1G11410 693 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10006746 [exp] 411 / 6e-137 AT1G11340 836 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10007604 [exp] 409 / 5e-136 AT1G11340 694 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10007611 [exp] 407 / 2e-135 AT1G11340 751 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10041679 [exp] 395 / 5e-135 AT1G11340 417 / 1e-137 S-locus lectin protein kinase family protein (.1) Lus10041680 [exp] 423 / 4e-134 AT1G15520 1646 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0016 [poplar] [flax] PF11883 [poplar] [flax] DUF3403 Domain of unknown function (DUF3403)
Representative CDS sequence Show only first row Show all	>Potri.011G036466.1 pacid=42781598 polypeptide=Potri.011G036466.1.p locus=Potri.011G036466 ID=Potri.011G036466.1.v4.1 annot-version=v4.1 ATGCTGGCCATTTTAGTACCATCGATTGCATCGTTATGTTTTCTCATTAGCCTATCTGCTTATTTGTGGCTCAAGAAGAGGGCAAAAAAAGGTACTGAGC TGCAGGTAAACAGCAATTCTACTGAACTGGAATATTTCAAGCTCAGCACCATAACGGTGGCCACTAACAACTTCTCTCCAGCTAACAAACTCGGGCAAGG TGGTTTTGGCTCTGTTTATAAGGGTCTGCTAGCTAATGGACTGGAGGTTGCAATAAAAAGGTTATCCAGAAGTTCAAGACAAGGAATAGAAGATTTTAAA AATGAAGTTATGGTAATTGCAAAGCTTCAACACAGGAATCTTGTGAAACTTCTAGGTTACTGCAATCAGGATGGAGAACAAATGTTAATCTATGAATACT TGCCAAACAAAAGCTTGGACTCGTTTCTTTTCCATGAAAGCAGAAGATTGTTATTGGATTGGCGAAAACGCTTTGACATTATTGTTGGAATAGCTCGTGG GATTTTATATCTTCACCAAGGCTCCAGGTTGAGAATCATTCACAGGGATTTAAAATGTAGCAACATTCTACTGGATGCAGAGATGAACCCAAAAATATCA GATTTCGGAACGGCAAAAATATTTGAAGGCAACCAAACTGAAGATAGGACCAGTAGAGTTGTAGGAACATTTGGCTATATGTCACCAGAATATGCTGTGC TTGGAAACTTTTCTGTAAAATCAGATGTTTTCAGTTTTGGGGTCATGTTGCTAGAGATTGTGAGTGGCAAGAAGAACAATAGATTTTATCAACAGGATCC TCCTTTGACCTTGATTGGATATGTGTGGGAATTATGGACACAAGACAAAGCATTGGAGATAGTGGATCCATCACTGAACGAGTTATATCGTCGACGTGAA GCCTTCAAATGCATACAAATTGGTCTGCTGTGCGTGCAAGAAGATGCCGCGGACAGATCATCTATGTTGGCTGTTGTTTTTATGTTGAGTAACGAAACAG AGATTCCTTCTCCAAAACAACCTGCATTCCTCTTTAGAAAATCTGACAATAATCCTGATATAGCATTAGACGTAGAAGATGGACAGTGTTCTGTAAATGA GGTGACAATTACTGAAATTGCCTGTCGCTGA
AA sequence Show only first row Show all	>Potri.011G036466.1 pacid=42781598 polypeptide=Potri.011G036466.1.p locus=Potri.011G036466 ID=Potri.011G036466.1.v4.1 annot-version=v4.1 MLAILVPSIASLCFLISLSAYLWLKKRAKKGTELQVNSNSTELEYFKLSTITVATNNFSPANKLGQGGFGSVYKGLLANGLEVAIKRLSRSSRQGIEDFK NEVMVIAKLQHRNLVKLLGYCNQDGEQMLIYEYLPNKSLDSFLFHESRRLLLDWRKRFDIIVGIARGILYLHQGSRLRIIHRDLKCSNILLDAEMNPKIS DFGTAKIFEGNQTEDRTSRVVGTFGYMSPEYAVLGNFSVKSDVFSFGVMLLEIVSGKKNNRFYQQDPPLTLIGYVWELWTQDKALEIVDPSLNELYRRRE AFKCIQIGLLCVQEDAADRSSMLAVVFMLSNETEIPSPKQPAFLFRKSDNNPDIALDVEDGQCSVNEVTITEIACR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G11340			S-locus lectin protein kinase ...		Potri.011G036466 [exp]	0	1
AT1G11340			S-locus lectin protein kinase ...		Potri.011G036532 [exp]	3.46	0.8841
AT1G11340			S-locus lectin protein kinase ...		Potri.011G035800 [exp]	7.07	0.8864
AT1G26190			Phosphoribulokinase / Uridine ...		Potri.010G134400 [exp]	7.74	0.8098
AT4G27290			S-locus lectin protein kinase ...		Potri.011G035913 [exp]	8.48	0.8656
AT2G35390			Phosphoribosyltransferase fami...		Potri.003G088400 [exp]	9.16	0.8338
AT1G11340			S-locus lectin protein kinase ...		Potri.011G036100 [exp]	10.39	0.8281
AT1G11340			S-locus lectin protein kinase ...		Potri.011G036400 [exp]	10.72	0.8595
AT2G44130			Galactose oxidase/kelch repeat...		Potri.003G218400 [exp]	11.22	0.8083
AT5G42900		COR27	cold regulated gene 27 (.1.2.3...		Potri.002G125900 [exp]	11.48	0.8211
AT4G32250			Protein kinase superfamily pro...		Potri.018G026400 [exp]	14.14	0.8257

Compare expression of checked genes

Potri.011G036466 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.