Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11340 246 / 6e-75 S-locus lectin protein kinase family protein (.1) AT1G11410 233 / 2e-70 S-locus lectin protein kinase family protein (.1) AT4G27290 207 / 4e-61 S-locus lectin protein kinase family protein (.1) AT4G21390 189 / 4e-54 B120 S-locus lectin protein kinase family protein (.1) AT4G21380 188 / 6e-54 ARK3 receptor kinase 3 (.1) AT1G61610 185 / 1e-52 S-locus lectin protein kinase family protein (.1) AT1G65800 182 / 1e-51 ARK2 receptor kinase 2 (.1) AT1G65790 182 / 2e-51 ARK1 receptor kinase 1 (.1) AT1G11330 171 / 9e-48 S-locus lectin protein kinase family protein (.1.2) AT3G12000 164 / 2e-47 S-locus related protein SLR1, putative (S1) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G036600 [exp] 578 / 0 AT1G11340 741 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G036400 [exp] 560 / 0 AT1G11340 726 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G036100 [exp] 516 / 1e-179 AT1G11340 719 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G035800 [exp] 515 / 4e-179 AT1G11340 705 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G028300 [exp] 380 / 3e-126 AT1G11340 742 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G035700 [exp] 374 / 5e-124 AT1G11340 743 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G028701 [exp] 297 / 5e-94 AT1G11340 899 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G028466 [exp] 288 / 5e-91 AT1G11340 884 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G035901 [exp] 269 / 1e-90 AT1G11340 171 / 8e-49 S-locus lectin protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024064 [exp] 333 / 7e-108 AT1G11340 735 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10007604 [exp] 306 / 2e-97 AT1G11340 694 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10041680 [exp] 312 / 2e-96 AT1G15520 1646 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10005136 [exp] 296 / 7e-96 AT1G11340 471 / 2e-155 S-locus lectin protein kinase family protein (.1) Lus10013244 [exp] 285 / 4e-90 AT1G11340 669 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10013910 [exp] 283 / 3e-89 AT1G11340 628 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10034637 [exp] 284 / 4e-89 AT1G11340 660 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10030768 [exp] 284 / 9e-89 AT1G11340 667 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10013246 [exp] 282 / 2e-88 AT1G11340 678 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10030767 [exp] 283 / 8e-87 AT1G11340 670 / 0.0 S-locus lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00954 [poplar] [flax] S_locus_glycop S-locus glycoprotein domain PF01453 [poplar] [flax] B_lectin D-mannose binding lectin
Representative CDS sequence Show only first row Show all	>Potri.011G036532.1 pacid=42780362 polypeptide=Potri.011G036532.1.p locus=Potri.011G036532 ID=Potri.011G036532.1.v4.1 annot-version=v4.1 ATGGAAGCTGAAAAACTGTTCCTGCTTTTTTCTCTTATAATGCTCCAATTCTCATCTTGCACATCCCAAGACTCCTTAAAGACGAACCACACCATTAAAG AAGGTGACCTTCTTATCTCCAAAGGAAATATTTTCGCACTAGGATTTTTCAGTCCTGGCAGTTCAACCAATAGATACCTTGGAATTTGGTACCATAAAAT ACCTGAACAAACTGTGGTGTGGGTTGCAAACAGGAACGATCCAATCATTGGTTCCTCTGGATTTCTCTTCATAAACCAATTTGGTAACCTCGTTCTCTAT CGTAAAGATGACCAAAAGCTTCTAGTGTGGTCTACCAATGTTTCAGTGGAAGAAAATGATACTTGTGAAGCTCAACTCTTGGATTCTGGGAATTTGATAT TGGTCAGGAAAAGAAGCAGAAAGATTGTATGGCAAAGCTTCGATTATCCTACTAACATACAGCTACCTGGAATGAAACTGGGGCTGGATCGAAAATTAGG AACTGATCGGTTCCTAACATCATGGAGATCAGCTGATGACCCTGGGATTGGAGACTTTTCTCTTAGGATCAACCCAAATGGCTCGCCACAATTCTTTTTC TATAATGCTACAAAGCCAATTAGTAGATCTCCTCCTTGGCCATGGAGAAGTCAGATGGGCTTATACAAAAGCGCTTTTGTAAATGATCCAGATGAAATAT ACTGCGTCTACACAGTTCCTGATGATTCTTATCTGCTAAGAATAATAGTAGATCATTTAGGACTTGTAAAGGTGTTAACATGGCGAGAAAGTGATGGTCA GTGGAAGGATTACTGGAAGGCCCCTCAGTTTCACTGCGACTATTATGGGCATTGTGGTGCTTATAGTACGTGTGAACTTGCCAATCTAAATGAATTTGGA TGTGCCTGTTTACCTGGGTTCGAGCCCAAGTACCCATTGGAATAG
AA sequence Show only first row Show all	>Potri.011G036532.1 pacid=42780362 polypeptide=Potri.011G036532.1.p locus=Potri.011G036532 ID=Potri.011G036532.1.v4.1 annot-version=v4.1 MEAEKLFLLFSLIMLQFSSCTSQDSLKTNHTIKEGDLLISKGNIFALGFFSPGSSTNRYLGIWYHKIPEQTVVWVANRNDPIIGSSGFLFINQFGNLVLY RKDDQKLLVWSTNVSVEENDTCEAQLLDSGNLILVRKRSRKIVWQSFDYPTNIQLPGMKLGLDRKLGTDRFLTSWRSADDPGIGDFSLRINPNGSPQFFF YNATKPISRSPPWPWRSQMGLYKSAFVNDPDEIYCVYTVPDDSYLLRIIVDHLGLVKVLTWRESDGQWKDYWKAPQFHCDYYGHCGAYSTCELANLNEFG CACLPGFEPKYPLE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G11340			S-locus lectin protein kinase ...		Potri.011G036532 [exp]	0	1
AT1G11340			S-locus lectin protein kinase ...		Potri.011G036400 [exp]	1.41	0.9525
AT1G11340			S-locus lectin protein kinase ...		Potri.011G036466 [exp]	3.46	0.8841
AT1G11340			S-locus lectin protein kinase ...		Potri.011G035800 [exp]	4.00	0.9223
AT2G03630			unknown protein		Potri.010G158000 [exp]	5.47	0.8375
AT1G11340			S-locus lectin protein kinase ...		Potri.011G036100 [exp]	5.91	0.8649
AT4G27290			S-locus lectin protein kinase ...		Potri.011G035913 [exp]	8.66	0.8778
AT1G07540	MYB	TRFL2	TRF-like 2 (.1)		Potri.001G241600 [exp]	10.67	0.7625
AT4G32250			Protein kinase superfamily pro...		Potri.018G026400 [exp]	13.41	0.8284
AT2G35390			Phosphoribosyltransferase fami...		Potri.003G088400 [exp]	17.94	0.8150
AT5G47560		ATTDT, ATSDAT	tonoplast dicarboxylate transp...		Potri.006G013900 [exp]	19.33	0.8064

Compare expression of checked genes

Potri.011G036532 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.