Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27290 643 / 0 S-locus lectin protein kinase family protein (.1) AT4G27300 638 / 0 S-locus lectin protein kinase family protein (.1) AT4G21380 629 / 0 ARK3 receptor kinase 3 (.1) AT1G65800 587 / 0 ARK2 receptor kinase 2 (.1) AT1G65790 583 / 0 ARK1 receptor kinase 1 (.1) AT1G11340 580 / 0 S-locus lectin protein kinase family protein (.1) AT1G11410 564 / 0 S-locus lectin protein kinase family protein (.1) AT1G11330 564 / 0 S-locus lectin protein kinase family protein (.1.2) AT4G21390 551 / 0 B120 S-locus lectin protein kinase family protein (.1) AT1G61610 540 / 0 S-locus lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G036612 [exp] 741 / 0 AT4G27290 655 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G125050 [exp] 739 / 0 AT4G27290 870 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G414077 [exp] 715 / 0 AT4G27290 855 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G411300 [exp] 706 / 0 AT4G27290 759 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G125601 [exp] 706 / 0 AT4G27290 914 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G413800 [exp] 705 / 0 AT4G27290 991 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G418100 [exp] 702 / 0 AT4G27290 778 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G412300 [exp] 701 / 0 AT4G27290 886 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G411400 [exp] 696 / 0 AT4G27290 770 / 0.0 S-locus lectin protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038552 [exp] 683 / 0 AT4G27290 879 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038553 [exp] 667 / 0 AT4G27290 899 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038557 [exp] 661 / 0 AT4G27290 803 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10014813 [exp] 659 / 0 AT4G27290 805 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10037729 [exp] 657 / 0 AT4G27290 750 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10037732 [exp] 657 / 0 AT4G21380 768 / 0.0 receptor kinase 3 (.1) Lus10016871 [exp] 657 / 0 AT4G27290 752 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10037865 [exp] 657 / 0 AT4G27300 804 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10016860 [exp] 652 / 0 AT4G21380 743 / 0.0 receptor kinase 3 (.1) Lus10038554 [exp] 640 / 0 AT4G27290 776 / 0.0 S-locus lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00954 [poplar] [flax] S_locus_glycop S-locus glycoprotein domain PF01453 [poplar] [flax] B_lectin D-mannose binding lectin CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0168 [poplar] [flax] PAN PF08276 [poplar] [flax] PAN_2 PAN-like domain
Representative CDS sequence Show only first row Show all	>Potri.011G037000.5 pacid=42781072 polypeptide=Potri.011G037000.5.p locus=Potri.011G037000 ID=Potri.011G037000.5.v4.1 annot-version=v4.1 ATGAAGAACATTGTCTTGTCTTCCAATCCATCCACAACCTCAAACAATCCAATCTTACAGCTCCTGAGCACAGGAAATCTTGTTGTCAAAGATATTGGCA GTGATGATATTTCAAACAACTATATCTGGCAGAGCTTTGATTATCCATGTGATACTTTGATACCAGGCATGAAGCTAGGATGGGACCTAACAACTGGCCA GAATTGGTTCTTGACTTCGTGGAAAAGTCTTCAAGATCCATCTGCAGGACTTTATACCTATAAATTGGATATCAAGGGGCTTCCACAGGTACATCTTCGC AGAGGATCAGATATAGTATATCGAAGCGGGCCATGGGATGGTGTCATGTGGGATGGTCTCAGGTTGGGAGGGGGTCTTCAAATGAAAGGTTTCCAGATAT TCAAGTCTATATTCATCTATAACTCAAATTACATATACTTTAGCTTTGACAACAGTGATAATAATATGATATCACGGTTCCTTGTTGACAGTTCTGGCGT GCTTAATTACTTCACATGGAACCAAAAATCCAATGAGTGGTTTCTAATGTTCTCTTTGCAGAAAGATCTTTGTGATGCATATTCAAGATGTGGTCCAAAT GGTATTTGTAATGAAAACCAGGTGCCCATTTGCCATTGCCCAACTGGGTTTGTGCCAAAGGTGACAGAGGAATGGTATTCAATGGATTGGTCCAGCGGAT GTGTGCCAAGAAAACCACTGAATTGTAGCACAAATGAGGGATTTATGAGGTTTCCAAACTTGAAGTTGCCAGATAATTCATATGCTATGCAGTCTATTAC AACTAATCAGGAGAACTGTGCAGATGCTTGTCTGAGGAACTGCTCATGCGTTGCTTATGCCACAACTGAACTTATTGATTGCGTGACGTGGTTTGGGGAC TTGTTGGATGTTAGTGAATTCAATGACGGAGGGGATGAACTGTATGTTCGGATGGCTGCTTCTGAACTTGAAAGCAGTGCAATGGACAAAGTGACACTGA TCATATTCTGGGCCTCAACAATTTTAGCGGTTCTTCTGTTGGTTTTAGTTGCCTTGTACGTTTTATGGAAGAGGAAGTCTGGCAGAAAGATAGGCCAATC TGTAGAAGAGGCATGCCATGATGATAAACCTGGCCTTGAAGACCTAGAGCTACCATTATTTGATCGGAGTACTATTGCAGCTGCAACAAATGACTTTGCA TTTGCTAATAAGGTTGGAGAAGGTGGTTTCGGCCCTGTTTACAAGGGCAAGCTCTCTACTGGTCAAGAAATAGCAGTAAAGGTACTCTCCAAAGATTCAG GACAAGGCCTTAAAGAATTCAAGAATGAAGTTATCTTGATTGCTAAGCTTCAGCACCGAAATCTTGTTAGGCTCTTGGGATGTTATATTCACGCAGAAGA ACAGATGTTGGTCTACGAGTACATGTCCAAAAGAAGTTTGGACTTATATATTTTTGACTCACAGGAAGGTGCATCCCTTGATTGGCAGAAACGCTTTAAC ATAGTAGTAGGCATTGCTAGAGGACTTCTTTATCTTCACAGAGATTCAAGGTTGAGAATCATTCATAGGGATCTAAAAGCTAGCAACATTCTGTTAGACA GTGATTTGAATCCAAAAATATCAGATTTTGGCTTGGCAAGAATGTTTGGAGGTGATCAAACTGAAGCAAAAACGTGCCGGGTTATGGGAACTTATGGCTA TATGTCCCCCGAGTATGCAATAGATGGACAATTTTCAGTCAAATCTGATGTCTTCAGCTTTGGTGTATTGCTCCTAGAAATAGTGAGTGGAAAGAGGAAC AGAGAATTCTATCATCCTGATCATGACTTCAACCTTCTAGGACATGCATGGATATTATGGAATGATGAACGGGCTATTGAGCTGCTAATGGATCCTTTTA TGGGGAATCCGATTAACACATCTGAAGTATTGAAATGTATTCAAGTTGGCCTCTTGTGTGTGCAACAGTGCCCTGAAGATAGGCCAACAATGTCGTCTGT TGTTCTGATGTTGGATTGTGAGAATCCTTTGCTGCCTCAGCCTAGAAAACCTGGATATTATACAGATAGGTGTCTTCTATCGAATATGGAAAGCTATTTT TCTGGAAATGACTTGAGTATAACAACATTAATGGGTCGATAG
AA sequence Show only first row Show all	>Potri.011G037000.5 pacid=42781072 polypeptide=Potri.011G037000.5.p locus=Potri.011G037000 ID=Potri.011G037000.5.v4.1 annot-version=v4.1 MKNIVLSSNPSTTSNNPILQLLSTGNLVVKDIGSDDISNNYIWQSFDYPCDTLIPGMKLGWDLTTGQNWFLTSWKSLQDPSAGLYTYKLDIKGLPQVHLR RGSDIVYRSGPWDGVMWDGLRLGGGLQMKGFQIFKSIFIYNSNYIYFSFDNSDNNMISRFLVDSSGVLNYFTWNQKSNEWFLMFSLQKDLCDAYSRCGPN GICNENQVPICHCPTGFVPKVTEEWYSMDWSSGCVPRKPLNCSTNEGFMRFPNLKLPDNSYAMQSITTNQENCADACLRNCSCVAYATTELIDCVTWFGD LLDVSEFNDGGDELYVRMAASELESSAMDKVTLIIFWASTILAVLLLVLVALYVLWKRKSGRKIGQSVEEACHDDKPGLEDLELPLFDRSTIAAATNDFA FANKVGEGGFGPVYKGKLSTGQEIAVKVLSKDSGQGLKEFKNEVILIAKLQHRNLVRLLGCYIHAEEQMLVYEYMSKRSLDLYIFDSQEGASLDWQKRFN IVVGIARGLLYLHRDSRLRIIHRDLKASNILLDSDLNPKISDFGLARMFGGDQTEAKTCRVMGTYGYMSPEYAIDGQFSVKSDVFSFGVLLLEIVSGKRN REFYHPDHDFNLLGHAWILWNDERAIELLMDPFMGNPINTSEVLKCIQVGLLCVQQCPEDRPTMSSVVLMLDCENPLLPQPRKPGYYTDRCLLSNMESYF SGNDLSITTLMGR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G27290			S-locus lectin protein kinase ...		Potri.011G037000 [exp]	0	1
AT5G02880		UPL4	ubiquitin-protein ligase 4 (.1...		Potri.016G085200 [exp]	4.12	0.8376
AT3G13290		VCR	varicose-related (.1)		Potri.006G001400 [exp]	4.47	0.8154
AT3G07490		AtCML3, AGD11	calmodulin-like 3, ARF-GAP dom...		Potri.002G239100 [exp]	5.91	0.8024
AT2G27990	HD	PNF, BLH8	POUND-FOOLISH, BEL1-like homeo...		Potri.009G009900 [exp]	7.07	0.7479
AT4G24060	DOF	AtDof4,6	Dof-type zinc finger DNA-bindi...		Potri.001G086400 [exp]	7.48	0.8020	Pt-DOF4.2
AT5G17910			unknown protein		Potri.019G044500 [exp]	9.38	0.8273
AT1G63245		CLE14	CLAVATA3/ESR-RELATED 14 (.1)		Potri.002G228000 [exp]	11.22	0.7763
AT1G68130	C2H2ZnF	IDD14beta, IDD1...	indeterminate(ID)-domain 14 (....		Potri.008G140400 [exp]	11.83	0.7944
AT5G50170			C2 calcium/lipid-binding and G...		Potri.015G083500 [exp]	14.28	0.7479
					Potri.001G172450 [exp]	16.24	0.7863

Compare expression of checked genes

Potri.011G037000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.