Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21380 983 / 0 ARK3 receptor kinase 3 (.1) AT1G65790 936 / 0 ARK1 receptor kinase 1 (.1) AT1G65800 920 / 0 ARK2 receptor kinase 2 (.1) AT1G11410 676 / 0 S-locus lectin protein kinase family protein (.1) AT4G27300 650 / 0 S-locus lectin protein kinase family protein (.1) AT4G21390 623 / 0 B120 S-locus lectin protein kinase family protein (.1) AT1G61610 621 / 0 S-locus lectin protein kinase family protein (.1) AT1G11330 615 / 0 S-locus lectin protein kinase family protein (.1.2) AT1G11300 603 / 0 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) AT1G61390 592 / 0 S-locus lectin protein kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G028000 [exp] 1404 / 0 AT4G21380 1020 / 0.0 receptor kinase 3 (.1) Potri.001G414077 [exp] 830 / 0 AT4G27290 855 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G413800 [exp] 814 / 0 AT4G27290 991 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G409300 [exp] 802 / 0 AT4G27290 875 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G411000 [exp] 801 / 0 AT4G27290 775 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G411100 [exp] 801 / 0 AT4G27290 746 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G412300 [exp] 795 / 0 AT4G27290 886 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G125050 [exp] 794 / 0 AT4G27290 870 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G128800 [exp] 790 / 0 AT4G27290 856 / 0.0 S-locus lectin protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018405 [exp] 1063 / 0 AT4G21380 952 / 0.0 receptor kinase 3 (.1) Lus10007603 [exp] 1016 / 0 AT4G21380 942 / 0.0 receptor kinase 3 (.1) Lus10037732 [exp] 756 / 0 AT4G21380 768 / 0.0 receptor kinase 3 (.1) Lus10038552 [exp] 756 / 0 AT4G27290 879 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10016871 [exp] 749 / 0 AT4G27290 752 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10016860 [exp] 734 / 0 AT4G21380 743 / 0.0 receptor kinase 3 (.1) Lus10014813 [exp] 727 / 0 AT4G27290 805 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038554 [exp] 713 / 0 AT4G27290 776 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038556 [exp] 712 / 0 AT4G21380 769 / 0.0 receptor kinase 3 (.1) Lus10037865 [exp] 706 / 0 AT4G27300 804 / 0.0 S-locus lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00954 [poplar] [flax] S_locus_glycop S-locus glycoprotein domain PF01453 [poplar] [flax] B_lectin D-mannose binding lectin CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0168 [poplar] [flax] PAN PF08276 [poplar] [flax] PAN_2 PAN-like domain CL0168 [poplar] [flax] PF11883 [poplar] [flax] DUF3403 Domain of unknown function (DUF3403) CL0168 [poplar] [flax] PF12398 [poplar] [flax] DUF3660 Receptor serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.011G037100.1 pacid=42781851 polypeptide=Potri.011G037100.1.p locus=Potri.011G037100 ID=Potri.011G037100.1.v4.1 annot-version=v4.1 ATGAAATCTATAACAACAAGACACCATTGTTCCATCACCACTTTGTTGTTCTTCACAATCCTTTCTTTCTTCACCTCAAAATTTGCCTCATCTTTAGACA CCTTAACAGCAACAGAATCTCTTGTTAATGGCCAAACCCTCATCTCCACAAGCCAGGATTTTGAGCTTGGATTCTTCACTCCAGGCAATTCAAGAAACTG GTATGTGGGGATATGGTACAAGAACATACCAAGAACTTATGTCTGGGTAGCTAACAGAGATAACCCCCTCACAAACTCCTCTGGGACCTTCAAAATCTTA AATCAAAGCATTGTTCTTTTTGATCGGGCAGAGAATCTCATATGGTCATCCAATCAAACCAATGCAAGAAACCCAGTTATGCAGTTGTTAGATTCAGGAA ATCTAGTACTAAGAGATCAAGAAAGTGACAGTGGTCAGTTTTTATGGCAAAGCTTTGACTATCCAACTGATACTTTATTACCTGATATGAAGTTCGGTTG GGATCTAAACACAGGTGTAAACAGGTTCTTGCGTTCCTGGAAAAGCAGTGATGATCCTGGTACAGGTGATTTTTCTTTCAAGCTAGAGTATCATGGATTC CCTGAAGCTTTTTTATTGAAAGATCAAGAAATAAAGTATAGAAGTGGACCATGGAATGGACAAAGATTTAGTGGTGTGCCAGAAATGGAGCCTGTTGATT ACATGAGCTTCAATTTTATTACCAATCAAGATGAGGTATACTATTCCTTCCACATATCGAACAAGAGTTTATATTCAAGATTGAGTGTCACTTCATCTGG GCTTCTTCAAAGATTTGCCTGGGTTCCAGAGACACAACAATGGAGTCAGTTTTGGTACGCACCAAAAGATCAATGTGACGATTACAGAGAGTGTGGTCCA TATGGTATATGTGACTCAAATGCTTCACCAGTTTGCAAGTGTATGAAGGGTTTTCAGCCCAAGAATATTCAAGCGTGGAATTTGAGAGATGGGTCAAGTG GGTGTGTCAGGAGGACAGATTTGAATTGCTTGAAAGATAAATTTTTGCACATGAGGAACATGAAATTGCCAGAGAGCGAAACCACATATGTAGACAGGAA TACGAGTCTCAAGGATTGTGAATTGATGTGCTCAAGAAATTGTTCTTGTACTGCTTATGCTAACTCAAATATCAGCAATGGAGGCTCTGGCTGTGTGTTT TGGACTGGTGAACTCTTTGACATGAGACAATATCCAAAAGGTGGACAAGATCTCTATGTAAGATTGGCAGCTTCCGACATAGGTGATGGAAGCAGTGCTG GCACTATCATTATTGGCATTGCTGTTGGCATTGGCATTTTGATATTAGCACTGAGTGGCTTTTCCATATGGAAGAGGAAGAGATTGCTGAGTGTATGTAA TGGAAATACACCACAGAAAGGTCCTCAAGATAGAAGCCAAGATTTCTTGCTAAATGGGGTGGTTATAAGTAAGAAAGACTACACAGGTGAAAGAAGCCCA GATGAATTAGAACTGCCACTGTTAGATTTTAGCACAATAGCAACTGCTACCAACAATTTCGCTGACGAAAATAAACTAGGAGAAGGTGGTTTTGGTCGTG TTCACAAGGGTAGGCTAGTAGAAGGCCAAGAAGTAGCGGTGAAGAGGCTATCGAAGAATTCTGTTCAGGGAACAGAAGAATTCAAGAATGAGGTAAGGTT AATTGCAAGGGTTCAACACAGAAATCTTGTTCGACTGCTTGGTTGCTGCGTTGAGAAGGATGAGAAGATACTTATTTATGAGTTCATGGAAAACAGAAGC CTCGATTTTGTTCTTTTCAACAAGGCAAAGAGCTCTTTACTCAATTGGCAAAGGCGCTTCAACATAATTTGTGGGATTGCTAGAGGACTTTTGTACCTGC ATCAAGATTCCAGATTTAGAATTATCCACAGGGATCTCAAAGCAAGCAACATTCTACTTGATCATGAATGGACTCCAAAAATATCAGACTTTGGCATGGC TAGAATGTTTGGTGGAGATCAAATACAAGCAAACACCGTGAGAGTAGTGGGAACATATGGTTATATGTCTCCTGAATATGCAATGGATGGACTATTCTCA GCAAAATCTGACGTTTTCAGTTTCGGTGTTTTGGTTTTGGAGATAGTATGTGGGGAAAAGAACAGGGGGTTTTATCATTCATTCAGTGAACTTAACCTTC TTGGACATGTGTGGAGGCAGTGGAAAGATGGGAAGGGATTGGAAGTGTTAGATAAATCAGTTGGCAATTCATATAGCCCTTGTGAAGTTTTGAGATGCAT ACAAGTAGGCCTCTTATGTGTCCAAGAGAAAGCAGAAGATAGACCAACAATGTCTTCTGCAGTGTTAATGTTGAGCAGTGAAACCGCAACAATGCCCCAG CCGAGAACCCCTGGATATTGCCTTGGAAGGAGTCCTTTCGAAACCGATTCATCTTCAAGCAAACAAGATGAATCATTCTCTGTAAACCATGTTACAGTTA CAGTGCTAGATGCTAGGTAA
AA sequence Show only first row Show all	>Potri.011G037100.1 pacid=42781851 polypeptide=Potri.011G037100.1.p locus=Potri.011G037100 ID=Potri.011G037100.1.v4.1 annot-version=v4.1 MKSITTRHHCSITTLLFFTILSFFTSKFASSLDTLTATESLVNGQTLISTSQDFELGFFTPGNSRNWYVGIWYKNIPRTYVWVANRDNPLTNSSGTFKIL NQSIVLFDRAENLIWSSNQTNARNPVMQLLDSGNLVLRDQESDSGQFLWQSFDYPTDTLLPDMKFGWDLNTGVNRFLRSWKSSDDPGTGDFSFKLEYHGF PEAFLLKDQEIKYRSGPWNGQRFSGVPEMEPVDYMSFNFITNQDEVYYSFHISNKSLYSRLSVTSSGLLQRFAWVPETQQWSQFWYAPKDQCDDYRECGP YGICDSNASPVCKCMKGFQPKNIQAWNLRDGSSGCVRRTDLNCLKDKFLHMRNMKLPESETTYVDRNTSLKDCELMCSRNCSCTAYANSNISNGGSGCVF WTGELFDMRQYPKGGQDLYVRLAASDIGDGSSAGTIIIGIAVGIGILILALSGFSIWKRKRLLSVCNGNTPQKGPQDRSQDFLLNGVVISKKDYTGERSP DELELPLLDFSTIATATNNFADENKLGEGGFGRVHKGRLVEGQEVAVKRLSKNSVQGTEEFKNEVRLIARVQHRNLVRLLGCCVEKDEKILIYEFMENRS LDFVLFNKAKSSLLNWQRRFNIICGIARGLLYLHQDSRFRIIHRDLKASNILLDHEWTPKISDFGMARMFGGDQIQANTVRVVGTYGYMSPEYAMDGLFS AKSDVFSFGVLVLEIVCGEKNRGFYHSFSELNLLGHVWRQWKDGKGLEVLDKSVGNSYSPCEVLRCIQVGLLCVQEKAEDRPTMSSAVLMLSSETATMPQ PRTPGYCLGRSPFETDSSSSKQDESFSVNHVTVTVLDAR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G21380		ARK3	receptor kinase 3 (.1)		Potri.011G037100 [exp]	0	1
AT2G46620			P-loop containing nucleoside t...		Potri.015G007800 [exp]	2.82	0.7480
AT1G24160			unknown protein		Potri.013G101300 [exp]	4.00	0.8035
AT4G32060			calcium-binding EF hand family...		Potri.018G118116 [exp]	4.47	0.7742
AT5G52340		ATEXO70A2	exocyst subunit exo70 family p...		Potri.016G071000 [exp]	8.71	0.7983
AT4G32010	B3	HSL1, HSI2-L1, ...	VP1/ABI3-LIKE 2, HSI2-like 1 (...		Potri.016G136500 [exp]	11.48	0.7881
AT1G07380			Neutral/alkaline non-lysosomal...		Potri.016G110000 [exp]	15.19	0.7116
AT1G10850			Leucine-rich repeat protein ki...		Potri.008G144900 [exp]	21.49	0.7567
AT5G46080			Protein kinase superfamily pro...		Potri.004G049200 [exp]	22.24	0.7406
AT3G55950		CCR3, ATCRR3	CRINKLY4 related 3 (.1)		Potri.008G068700 [exp]	22.27	0.7316
AT1G15950		IRX4, ATCCR1, C...	IRREGULAR XYLEM 4, cinnamoyl c...		Potri.001G045800 [exp]	23.62	0.6910

Compare expression of checked genes

Potri.011G037100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.