Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07870 134 / 6e-35 F-box and associated interaction domains-containing protein (.1) AT4G12560 105 / 6e-25 CPR1, CPR30 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) AT3G06240 99 / 2e-22 F-box family protein (.1) AT3G23880 87 / 1e-18 F-box and associated interaction domains-containing protein (.1) AT1G12855 74 / 4e-14 F-box family protein (.1) AT4G22390 74 / 5e-14 F-box associated ubiquitination effector family protein (.1) AT1G71320 72 / 1e-13 F-box family protein (.1) AT3G16210 71 / 3e-13 F-box family protein (.1) AT1G33530 69 / 1e-12 F-box family protein (.1) AT5G49610 68 / 3e-12 F-box family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G037312 [exp] 837 / 0 AT3G07870 134 / 3e-35 F-box and associated interaction domains-containing protein (.1) Potri.001G129200 [exp] 176 / 7e-51 AT3G07870 110 / 8e-27 F-box and associated interaction domains-containing protein (.1) Potri.014G162600 [exp] 164 / 4e-46 AT3G07870 467 / 9e-164 F-box and associated interaction domains-containing protein (.1) Potri.001G396800 [exp] 163 / 7e-46 AT3G07870 99 / 2e-22 F-box and associated interaction domains-containing protein (.1) Potri.002G223000 [exp] 161 / 4e-45 AT3G07870 467 / 5e-164 F-box and associated interaction domains-containing protein (.1) Potri.011G137200 [exp] 153 / 5e-42 AT3G07870 94 / 1e-20 F-box and associated interaction domains-containing protein (.1) Potri.001G224200 [exp] 150 / 3e-41 AT3G07870 105 / 4e-25 F-box and associated interaction domains-containing protein (.1) Potri.008G215800 [exp] 147 / 5e-40 AT3G07870 101 / 3e-23 F-box and associated interaction domains-containing protein (.1) Potri.008G215901 [exp] 147 / 6e-40 AT3G07870 103 / 3e-24 F-box and associated interaction domains-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012355 [exp] 127 / 6e-33 AT3G07870 393 / 2e-135 F-box and associated interaction domains-containing protein (.1) Lus10036105 [exp] 125 / 7e-32 AT3G07870 206 / 1e-61 F-box and associated interaction domains-containing protein (.1) Lus10006403 [exp] 119 / 2e-30 AT3G07870 362 / 2e-124 F-box and associated interaction domains-containing protein (.1) Lus10012358 [exp] 114 / 9e-28 AT3G07870 181 / 3e-52 F-box and associated interaction domains-containing protein (.1) Lus10039024 [exp] 101 / 2e-23 AT4G12560 333 / 3e-111 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10023238 [exp] 96 / 1e-21 AT3G23880 126 / 6e-33 F-box and associated interaction domains-containing protein (.1) Lus10012356 [exp] 91 / 9e-21 AT3G07870 126 / 7e-34 F-box and associated interaction domains-containing protein (.1) Lus10040463 [exp] 93 / 2e-20 AT4G12560 117 / 7e-29 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10008871 [exp] 91 / 7e-20 AT4G12560 135 / 1e-35 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10038606 [exp] 86 / 2e-18 AT3G07870 112 / 1e-27 F-box and associated interaction domains-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [poplar] [flax] F-box PF00646 [poplar] [flax] F-box F-box domain CL0162 [poplar] [flax] FBA PF07734 [poplar] [flax] FBA_1 F-box associated
Representative CDS sequence Show only first row Show all	>Potri.011G037200.1 pacid=42780987 polypeptide=Potri.011G037200.1.p locus=Potri.011G037200 ID=Potri.011G037200.1.v4.1 annot-version=v4.1 ATGAAGAGCCACAGAGGAAGACGATCTAGAGCCAAGAATGGTGGCAACCAAGCTCAAGATGCAGAATGGTCAATGTCTGCGCTTCCGGACGATATAACCG CAGACATTCTCTTGCAACTCCCCTTGAAAAGCAAAATTCAATGTAGGTGTGTATGCAGGACCTGGCGCAATTTACTCTCGGACTCGTACTTCTCTGAAGT TCAACGTGAAAGAGCTCAATCCATGCTTGTCCTTCGCTCGCCACCGTCATGTGTTTCCAGGAAAGCTGCAGCCCTTGCTCCGAACGATTTTTACGTGGTT GATCTCGAATCAGGTTCAGTTCGCAATAATGTCATGAAGTTAAACACCAAAAACAATCTCCCCACCTGTCATGTCGAACTGGTGGGCTCATGCAACGGCT TGCTTTGTTTGTTTGATAAGAATTCGAAGAAAGTTTTTTACCTTTGCAATCCAGTGACGGGTGAACATGTCAGGACTCCTGCGAACTGCAAGAAGGAAAA ACAGAGAGGGAAAACGATATTGGATGCGGTTCTTGGGTTTGGGTTTAGTCCTAAAAGCAATCATTACATGGTTTTAAGAATAACCCGTAAGAAACTTACT TATCCTATTTCTATTCTGCGTTCAGAAGGTGAAATTTGCATATTTGGAGACAATGAGTGGAAAAGTATTGGGGAGATTCCATTCCCAGATTGTAAGAAAT TCTTTGGTGTTTCTCTGAATGGAGCTCTTCATTGGATTCTCAACCTTGATGACTATGAAGATGCTGATTTGATATGTGCTTTAGATATCGACAGCAAAAA GATTAGGCCAATGTCGCCACCGAATGGCTTCAGGAGGGATACTACAGAGATGACCTTGGGAGTACTAAGAGATTGTCTCTTTATATGTGACAGTATGACT TTGTATAATCTTGACATATGGGTGATGAAAGAATATGGAGTCAAGGATTCTTGGACTAAAGAGATTGTAATTGCGAAGACCTCGCTTCCTTCGAATCTGC AAAATTCCTTTCTCCAGCCAATTATGGTTTCTAAGGATGGAGAGGTTTTGATTTCAAGTGATTCCAACGTTTTTGTTTGGTATGATCCAGGAAGTAAAAG TTTCACAAAAGTAACTCTACCCAGCAGGGTTGGGTCCGAATTCGAAGCAGTTTGTTCTGTTGCAAGCTTTGATTCGCTATCTGCCATCATGAAGAAAGAA TGCAGGAGGGATCAATGCTACACAGCAAGATAA
AA sequence Show only first row Show all	>Potri.011G037200.1 pacid=42780987 polypeptide=Potri.011G037200.1.p locus=Potri.011G037200 ID=Potri.011G037200.1.v4.1 annot-version=v4.1 MKSHRGRRSRAKNGGNQAQDAEWSMSALPDDITADILLQLPLKSKIQCRCVCRTWRNLLSDSYFSEVQRERAQSMLVLRSPPSCVSRKAAALAPNDFYVV DLESGSVRNNVMKLNTKNNLPTCHVELVGSCNGLLCLFDKNSKKVFYLCNPVTGEHVRTPANCKKEKQRGKTILDAVLGFGFSPKSNHYMVLRITRKKLT YPISILRSEGEICIFGDNEWKSIGEIPFPDCKKFFGVSLNGALHWILNLDDYEDADLICALDIDSKKIRPMSPPNGFRRDTTEMTLGVLRDCLFICDSMT LYNLDIWVMKEYGVKDSWTKEIVIAKTSLPSNLQNSFLQPIMVSKDGEVLISSDSNVFVWYDPGSKSFTKVTLPSRVGSEFEAVCSVASFDSLSAIMKKE CRRDQCYTAR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G07870			F-box and associated interacti...		Potri.011G037200 [exp]	0	1
AT5G01210			HXXXD-type acyl-transferase fa...		Potri.016G112400 [exp]	16.30	0.7420
AT1G64160			Disease resistance-responsive ...		Potri.003G134800 [exp]	21.44	0.6856	DRR206.4
AT3G07870			F-box and associated interacti...		Potri.011G037312 [exp]	30.98	0.6248
AT1G68460		ATIPT1	Arabidopsis thaliana isopenten...		Potri.008G121500 [exp]	37.21	0.7239
AT1G17860			Kunitz family trypsin and prot...		Potri.010G007911 [exp]	57.34	0.7037
AT1G17860			Kunitz family trypsin and prot...		Potri.010G010111 [exp]	62.13	0.6952
AT1G72810			Pyridoxal-5'-phosphate-depende...		Potri.001G199100 [exp]	76.91	0.6128
					Potri.017G011000 [exp]	77.21	0.6840
AT4G00870	bHLH	bHLH014	basic helix-loop-helix (bHLH) ...		Potri.001G083500 [exp]	81.16	0.6811
					Potri.007G133200 [exp]	97.92	0.6752

Compare expression of checked genes

Potri.011G037200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.