Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11330 629 / 0 S-locus lectin protein kinase family protein (.1.2) AT1G11300 602 / 0 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) AT1G11350 576 / 0 SD1-13, RKS2, CBRLK1 CALMODULIN-BINDING RECEPTOR-LIKE PROTEIN KINASE, S-domain-1 13 (.1) AT1G61390 546 / 0 S-locus lectin protein kinase family protein (.1.2) AT1G61480 543 / 0 S-locus lectin protein kinase family protein (.1) AT1G61490 542 / 0 S-locus lectin protein kinase family protein (.1) AT1G61550 531 / 1e-179 S-locus lectin protein kinase family protein (.1) AT1G61380 531 / 1e-179 SD1-29 S-domain-1 29 (.1) AT1G61370 530 / 3e-179 S-locus lectin protein kinase family protein (.1) AT1G61360 529 / 9e-179 S-locus lectin protein kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G038000 [exp] 1186 / 0 AT1G11330 810 / 0.0 S-locus lectin protein kinase family protein (.1.2) Potri.011G037800 [exp] 1186 / 0 AT1G11330 838 / 0.0 S-locus lectin protein kinase family protein (.1.2) Potri.011G038800 [exp] 1173 / 0 AT1G11330 838 / 0.0 S-locus lectin protein kinase family protein (.1.2) Potri.011G038401 [exp] 1167 / 0 AT1G11330 826 / 0.0 S-locus lectin protein kinase family protein (.1.2) Potri.011G038524 [exp] 873 / 0 AT1G11330 437 / 1e-145 S-locus lectin protein kinase family protein (.1.2) Potri.011G039200 [exp] 840 / 0 AT1G11330 864 / 0.0 S-locus lectin protein kinase family protein (.1.2) Potri.011G039000 [exp] 832 / 0 AT1G11330 797 / 0.0 S-locus lectin protein kinase family protein (.1.2) Potri.011G039100 [exp] 824 / 0 AT1G11330 859 / 0.0 S-locus lectin protein kinase family protein (.1.2) Potri.011G038300 [exp] 796 / 0 AT1G11330 330 / 1e-105 S-locus lectin protein kinase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018408 [exp] 528 / 1e-176 AT4G21390 936 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10007600 [exp] 534 / 3e-171 AT1G11300 930 / 0.0 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) Lus10018407 [exp] 494 / 7e-165 AT1G61390 732 / 0.0 S-locus lectin protein kinase family protein (.1.2) Lus10037865 [exp] 486 / 1e-161 AT4G27300 804 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038552 [exp] 485 / 3e-161 AT4G27290 879 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038557 [exp] 480 / 2e-159 AT4G27290 803 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10016860 [exp] 472 / 3e-156 AT4G21380 743 / 0.0 receptor kinase 3 (.1) Lus10037729 [exp] 472 / 4e-156 AT4G27290 750 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10024064 [exp] 469 / 3e-155 AT1G11340 735 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10014808 [exp] 462 / 2e-154 AT4G27290 588 / 0.0 S-locus lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00954 [poplar] [flax] S_locus_glycop S-locus glycoprotein domain PF01453 [poplar] [flax] B_lectin D-mannose binding lectin CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0168 [poplar] [flax] PAN PF08276 [poplar] [flax] PAN_2 PAN-like domain
Representative CDS sequence Show only first row Show all	>Potri.011G037900.3 pacid=42780605 polypeptide=Potri.011G037900.3.p locus=Potri.011G037900 ID=Potri.011G037900.3.v4.1 annot-version=v4.1 ATGGGACTTGGCAACTGCGAAGTTGCAGTAGCTCTTCTTCTGTTTCTATCATGTTCCTGTTCAGTTTATGGTGATGCAGGAGATACCATAACTACTTCTC AACCCATCAAAGATCCAGAAGCTATAGAGTCTGCCGGAAAAAAGTTCCAACTGGGATTTTTCAGCCCAGTTAATTCAACATGTCGATATGTCGGAATATG GTATAGTAATATATCAGTAGCAACTCCAGTACTATGGGTGGCCAACAGAAACAAGCCAATCAACGATTCTTCTGGGATGATGACAAAATCTGAAGATGGA AATCTTGTGGTTTTGAATGGTCAGAGAGAGGTTCTGTGGTCATCAAATGTTTCAATTGGGTTCAATCAGTCAACTGCACAGCTTACTGATGATGGAAACC TTGTCTTGAAAGCTGGACCGAATGGAAACCTTGTATGGCAAAGTTTCCAGCAGCCTACGGATACTTACTTATCAAAGATGAGACTTAGTGCTAACGCAAG AACAGGGAACAAGACACTGCTAATGTCATGGAGAAGCTCATCTGATCCTTCATTTGGAAACTTCTCTGCTGGTGTCAATCCATTAGGAATTCCTGAGTTC TTCATCTGGTACAATGGTCATCCATTTTGGCGTAGTGGTCCATGGGGTGGTAAGAATTTTATCGGAATACCAGGAATGTATACTTCTGTGTATTTAGATG GATTTAGTCTACAAAATGAAGGAGATGGCACTTTTACTCTGAGTTCAATTCGAGACCCAGCTTTCCGATTAACGTATGTTTTAACTTCTCATGGAAAATT TAGAGAACAATACTGGGATTATGGGAAGCAAGGTTGGGAGTATGACTGGGAAACTCCATCAACTGAGTGTGATATTTATGGCAAGTGCGGGCCATTTGGA AGCTGCGATGCACAGAATTCACCTATCTGCACATGTTTAAAAGGGTTTGTTGCAAAAAATCAAGATGAATGGAACAAAGGAATTTGGACTAGTGGTTGTG TTAGGATGACATCGTTGCAGTGTGATAGAATACAGAATGGTAGTGAAGTGGGAAAAGAAGATGGGTTTATCAAGCTAGAGATGATGAAGGTGCCAACCTT TGCCGATTACTGGCCATATCCGTCCTCCGAACAAGAATGCAAAGATGAGTGCTTGAAGAATTGTTCCTGTGTCGCTTATTCATATTATAATGGCTTTGGT TGTATGGCATGGACAGGAAACTTGATTGATATACAAAAGTTCGCTGAAGGAGGAACAGATCTCAACATTCGCCTGGCGTATACAGAACTTGTTGCAGATA ACAAGAGAAACATGAAAGTAATCATCAGTATGTCAGTGATTGTAGGAGTCATAGCTATCTGCATCTGTGTGTTTTTTTATTGGAAGTGGATGGCTACACA TAGAGAAAGGAATTTGATAAGTGAGGAGACCTTATCGTCAGAAGCTCAAGAAACAGTTTTTGATGGAAACTTGCCCGAAAACATCGAGGAAGTTAAACTT GAACCATTCTTCAAATTAAAAATTCTTGAAACTGCTACAAACAACTTTGACATATCCAAGAAGCTTGGGCAGGGCGGCTTTGGTGGAGTATACAGGGGAA AATTGCCAGATGGGCAGGAAATAGCTGTGAAAAGACTCTCTAGAACATCTGGTCAAGGGCGCGAAGAGTTTATGAATGAAGTTGCGGTGATTTCTAAACT CCAACATAGGAATCTTGTGAGACTTCTTGGTTGCTGTGTTGAAGGAGAAGAGATGATGTTGGTTTATGAGTACATGCCGAATAAAAGCTTGGATGCATTT CTCTTTGATTCACTCAGGAAAGGACAGCTAGATTGGGAAAGACGCTTCGACATTATTAACGGGATTTGTCGAGGTCTTCTTTACCTTCACAGAGATTCTA GACTAAGAATTATTCATAGAGATCTGAAGCCAAGTAACATCTTATTGGACCATGAGCTGAATCCCAAAATTTCAGACTTTGGAATGGCCAGGGCAATGAA GATCAAGTGA
AA sequence Show only first row Show all	>Potri.011G037900.3 pacid=42780605 polypeptide=Potri.011G037900.3.p locus=Potri.011G037900 ID=Potri.011G037900.3.v4.1 annot-version=v4.1 MGLGNCEVAVALLLFLSCSCSVYGDAGDTITTSQPIKDPEAIESAGKKFQLGFFSPVNSTCRYVGIWYSNISVATPVLWVANRNKPINDSSGMMTKSEDG NLVVLNGQREVLWSSNVSIGFNQSTAQLTDDGNLVLKAGPNGNLVWQSFQQPTDTYLSKMRLSANARTGNKTLLMSWRSSSDPSFGNFSAGVNPLGIPEF FIWYNGHPFWRSGPWGGKNFIGIPGMYTSVYLDGFSLQNEGDGTFTLSSIRDPAFRLTYVLTSHGKFREQYWDYGKQGWEYDWETPSTECDIYGKCGPFG SCDAQNSPICTCLKGFVAKNQDEWNKGIWTSGCVRMTSLQCDRIQNGSEVGKEDGFIKLEMMKVPTFADYWPYPSSEQECKDECLKNCSCVAYSYYNGFG CMAWTGNLIDIQKFAEGGTDLNIRLAYTELVADNKRNMKVIISMSVIVGVIAICICVFFYWKWMATHRERNLISEETLSSEAQETVFDGNLPENIEEVKL EPFFKLKILETATNNFDISKKLGQGGFGGVYRGKLPDGQEIAVKRLSRTSGQGREEFMNEVAVISKLQHRNLVRLLGCCVEGEEMMLVYEYMPNKSLDAF LFDSLRKGQLDWERRFDIINGICRGLLYLHRDSRLRIIHRDLKPSNILLDHELNPKISDFGMARAMKIK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G11330			S-locus lectin protein kinase ...		Potri.011G037900 [exp]	0	1
AT3G23160			Protein of unknown function (D...		Potri.010G074000 [exp]	6.00	0.8034
AT5G23850			Arabidopsis thaliana protein o...		Potri.015G144400 [exp]	11.40	0.7676
AT4G16120		ATSEB1, COBL7	ARABIDOPSIS THALIANA SEC61 BET...		Potri.014G125300 [exp]	13.26	0.7768
AT1G26870	NAC	FEZ, ANAC009	FEZ, Arabidopsis NAC domain co...		Potri.017G082000 [exp]	14.96	0.7619
AT5G42630	GARP	KAN4, KANADI4, ...	KANADI 4, ABERRANT TESTA SHAPE...		Potri.014G037200 [exp]	18.33	0.7570
AT4G39330		AtCAD1, ATCAD9	cinnamyl alcohol dehydrogenase...		Potri.001G372400 [exp]	23.49	0.7277
AT1G03840	C2H2ZnF	MGP	Magpie, C2H2 and C2HC zinc fin...		Potri.005G027200 [exp]	24.00	0.7937
AT4G27290			S-locus lectin protein kinase ...		Potri.011G126201 [exp]	31.46	0.7640
AT1G79740			hAT transposon superfamily (.1...		Potri.001G405900 [exp]	52.38	0.7230
AT2G37260	WRKY	DSL1, ATWRKY44,...	TRANSPARENT TESTA GLABRA 2, DR...		Potri.006G133200 [exp]	59.74	0.7107

Compare expression of checked genes

Potri.011G037900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.